Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30615 and ABIE40_RS30620 overlap by 1 nucleotides ABIE40_RS30620 and ABIE40_RS30625 overlap by 8 nucleotides ABIE40_RS30625 and ABIE40_RS30630 are separated by 757 nucleotides
ABIE40_RS30615: ABIE40_RS30615 - DUF3618 domain-containing protein, at 814,407 to 815,396
_RS30615
ABIE40_RS30620: ABIE40_RS30620 - phage holin family protein, at 815,396 to 815,812
_RS30620
ABIE40_RS30625: ABIE40_RS30625 - nutrient deprivation-induced protein, at 815,805 to 816,359
_RS30625
ABIE40_RS30630: ABIE40_RS30630 - hypothetical protein, at 817,117 to 817,758
_RS30630
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1
2 at 814.998 kb on - strand, within ABIE40_RS30615 at 815.032 kb on + strand, within ABIE40_RS30615 at 815.032 kb on + strand, within ABIE40_RS30615 at 815.033 kb on - strand, within ABIE40_RS30615 at 815.092 kb on + strand, within ABIE40_RS30615 at 815.092 kb on + strand, within ABIE40_RS30615 at 815.093 kb on - strand, within ABIE40_RS30615 at 815.102 kb on - strand, within ABIE40_RS30615 at 815.233 kb on + strand, within ABIE40_RS30615 at 815.233 kb on + strand, within ABIE40_RS30615 at 815.233 kb on + strand, within ABIE40_RS30615 at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.648 kb on + strand, within ABIE40_RS30620 at 815.649 kb on - strand, within ABIE40_RS30620 at 815.664 kb on - strand, within ABIE40_RS30620 at 815.664 kb on - strand, within ABIE40_RS30620 at 815.664 kb on - strand, within ABIE40_RS30620 at 815.816 kb on + strand at 815.816 kb on + strand at 815.817 kb on - strand at 815.817 kb on - strand at 815.894 kb on + strand, within ABIE40_RS30625 at 815.894 kb on + strand, within ABIE40_RS30625 at 815.895 kb on - strand, within ABIE40_RS30625 at 815.901 kb on - strand, within ABIE40_RS30625 at 815.976 kb on - strand, within ABIE40_RS30625 at 816.041 kb on + strand, within ABIE40_RS30625 at 816.042 kb on - strand, within ABIE40_RS30625 at 816.237 kb on - strand, within ABIE40_RS30625 at 816.258 kb on + strand, within ABIE40_RS30625 at 816.382 kb on + strand at 816.382 kb on + strand at 816.677 kb on + strand at 816.678 kb on - strand at 816.879 kb on + strand at 816.896 kb on + strand at 816.897 kb on - strand at 816.915 kb on + strand at 816.916 kb on - strand at 816.916 kb on - strand at 816.984 kb on + strand at 816.984 kb on + strand at 816.985 kb on - strand at 817.046 kb on - strand at 817.066 kb on + strand at 817.066 kb on + strand at 817.151 kb on - strand at 817.211 kb on + strand, within ABIE40_RS30630 at 817.212 kb on - strand, within ABIE40_RS30630 at 817.212 kb on - strand, within ABIE40_RS30630 at 817.254 kb on + strand, within ABIE40_RS30630 at 817.255 kb on - strand, within ABIE40_RS30630 at 817.255 kb on - strand, within ABIE40_RS30630 at 817.313 kb on + strand, within ABIE40_RS30630 at 817.313 kb on + strand, within ABIE40_RS30630 at 817.313 kb on + strand, within ABIE40_RS30630
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 814,998 - ABIE40_RS30615 0.60 +0.4 815,032 + ABIE40_RS30615 0.63 -0.8 815,032 + ABIE40_RS30615 0.63 -0.7 815,033 - ABIE40_RS30615 0.63 -0.9 815,092 + ABIE40_RS30615 0.69 -1.0 815,092 + ABIE40_RS30615 0.69 -1.0 815,093 - ABIE40_RS30615 0.69 +1.1 815,102 - ABIE40_RS30615 0.70 +0.7 815,233 + ABIE40_RS30615 0.83 +0.8 815,233 + ABIE40_RS30615 0.83 +0.1 815,233 + ABIE40_RS30615 0.83 -1.9 815,397 + +2.7 815,397 + -1.0 815,397 + -1.3 815,397 + -0.5 815,397 + +1.7 815,397 + +2.7 815,398 - +1.2 815,398 - +1.4 815,398 - +0.3 815,398 - -0.9 815,398 - -0.6 815,648 + ABIE40_RS30620 0.60 +2.1 815,649 - ABIE40_RS30620 0.61 -0.6 815,664 - ABIE40_RS30620 0.64 -0.2 815,664 - ABIE40_RS30620 0.64 +1.5 815,664 - ABIE40_RS30620 0.64 +2.7 815,816 + +0.4 815,816 + -1.5 815,817 - -0.5 815,817 - +1.9 815,894 + ABIE40_RS30625 0.16 +1.7 815,894 + ABIE40_RS30625 0.16 +0.1 815,895 - ABIE40_RS30625 0.16 +0.5 815,901 - ABIE40_RS30625 0.17 -0.1 815,976 - ABIE40_RS30625 0.31 +0.1 816,041 + ABIE40_RS30625 0.43 +2.7 816,042 - ABIE40_RS30625 0.43 +1.1 816,237 - ABIE40_RS30625 0.78 -0.1 816,258 + ABIE40_RS30625 0.82 +0.7 816,382 + +0.4 816,382 + +2.7 816,677 + +0.8 816,678 - -0.9 816,879 + +0.2 816,896 + +2.7 816,897 - -1.0 816,915 + +0.7 816,916 - +0.7 816,916 - +0.5 816,984 + +1.5 816,984 + -0.3 816,985 - +2.7 817,046 - +2.7 817,066 + +1.1 817,066 + +2.1 817,151 - -1.2 817,211 + ABIE40_RS30630 0.15 -1.6 817,212 - ABIE40_RS30630 0.15 +0.4 817,212 - ABIE40_RS30630 0.15 -0.3 817,254 + ABIE40_RS30630 0.21 -1.4 817,255 - ABIE40_RS30630 0.21 +1.1 817,255 - ABIE40_RS30630 0.21 -0.9 817,313 + ABIE40_RS30630 0.31 +1.8 817,313 + ABIE40_RS30630 0.31 -0.1 817,313 + ABIE40_RS30630 0.31 +0.8
Or see this region's nucleotide sequence