Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30350 and ABIE40_RS30355 are separated by 73 nucleotides ABIE40_RS30355 and ABIE40_RS30360 are separated by 251 nucleotides
ABIE40_RS30350: ABIE40_RS30350 - SDR family NAD(P)-dependent oxidoreductase, at 758,005 to 758,931
_RS30350
ABIE40_RS30355: ABIE40_RS30355 - response regulator, at 759,005 to 759,550
_RS30355
ABIE40_RS30360: ABIE40_RS30360 - ABC transporter ATP-binding protein/permease, at 759,802 to 761,622
_RS30360
Position (kb) 759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 758.101 kb on - strand, within ABIE40_RS30350 at 758.142 kb on + strand, within ABIE40_RS30350 at 758.142 kb on + strand, within ABIE40_RS30350 at 758.144 kb on + strand, within ABIE40_RS30350 at 758.207 kb on + strand, within ABIE40_RS30350 at 758.207 kb on + strand, within ABIE40_RS30350 at 758.207 kb on + strand, within ABIE40_RS30350 at 758.208 kb on - strand, within ABIE40_RS30350 at 758.208 kb on - strand, within ABIE40_RS30350 at 758.208 kb on - strand, within ABIE40_RS30350 at 758.208 kb on - strand, within ABIE40_RS30350 at 758.260 kb on + strand, within ABIE40_RS30350 at 758.261 kb on - strand, within ABIE40_RS30350 at 758.577 kb on + strand, within ABIE40_RS30350 at 758.578 kb on - strand, within ABIE40_RS30350 at 758.578 kb on - strand, within ABIE40_RS30350 at 758.722 kb on - strand, within ABIE40_RS30350 at 758.722 kb on - strand, within ABIE40_RS30350 at 758.852 kb on + strand at 758.853 kb on - strand at 758.853 kb on - strand at 758.905 kb on + strand at 758.976 kb on + strand at 758.984 kb on + strand at 759.055 kb on + strand at 759.055 kb on + strand at 759.055 kb on + strand at 759.055 kb on + strand at 759.118 kb on + strand, within ABIE40_RS30355 at 759.138 kb on - strand, within ABIE40_RS30355 at 759.138 kb on - strand, within ABIE40_RS30355 at 759.270 kb on - strand, within ABIE40_RS30355 at 759.553 kb on + strand at 759.553 kb on + strand at 759.553 kb on + strand at 759.554 kb on - strand at 759.554 kb on - strand at 759.571 kb on + strand at 759.572 kb on - strand at 759.572 kb on - strand at 759.572 kb on - strand at 759.572 kb on - strand at 759.736 kb on + strand at 759.736 kb on + strand at 759.736 kb on + strand at 759.830 kb on + strand at 759.831 kb on - strand at 759.831 kb on - strand at 759.877 kb on + strand at 759.877 kb on + strand at 759.977 kb on - strand at 759.977 kb on - strand at 760.072 kb on - strand, within ABIE40_RS30360 at 760.283 kb on + strand, within ABIE40_RS30360 at 760.283 kb on + strand, within ABIE40_RS30360 at 760.283 kb on + strand, within ABIE40_RS30360 at 760.283 kb on + strand, within ABIE40_RS30360 at 760.283 kb on + strand, within ABIE40_RS30360 at 760.283 kb on + strand, within ABIE40_RS30360 at 760.283 kb on + strand, within ABIE40_RS30360 at 760.284 kb on - strand, within ABIE40_RS30360 at 760.284 kb on - strand, within ABIE40_RS30360 at 760.284 kb on - strand, within ABIE40_RS30360 at 760.284 kb on - strand, within ABIE40_RS30360 at 760.284 kb on - strand, within ABIE40_RS30360 at 760.306 kb on + strand, within ABIE40_RS30360 at 760.306 kb on + strand, within ABIE40_RS30360 at 760.306 kb on + strand, within ABIE40_RS30360 at 760.306 kb on + strand, within ABIE40_RS30360 at 760.306 kb on + strand, within ABIE40_RS30360
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 758,101 - ABIE40_RS30350 0.10 +1.7 758,142 + ABIE40_RS30350 0.15 +2.1 758,142 + ABIE40_RS30350 0.15 -0.2 758,144 + ABIE40_RS30350 0.15 +0.6 758,207 + ABIE40_RS30350 0.22 +0.5 758,207 + ABIE40_RS30350 0.22 +1.2 758,207 + ABIE40_RS30350 0.22 -0.1 758,208 - ABIE40_RS30350 0.22 +2.1 758,208 - ABIE40_RS30350 0.22 -0.1 758,208 - ABIE40_RS30350 0.22 +0.0 758,208 - ABIE40_RS30350 0.22 +2.1 758,260 + ABIE40_RS30350 0.28 -1.3 758,261 - ABIE40_RS30350 0.28 -0.4 758,577 + ABIE40_RS30350 0.62 -1.3 758,578 - ABIE40_RS30350 0.62 -0.8 758,578 - ABIE40_RS30350 0.62 -0.3 758,722 - ABIE40_RS30350 0.77 +0.7 758,722 - ABIE40_RS30350 0.77 +0.1 758,852 + -2.0 758,853 - -1.8 758,853 - -0.7 758,905 + +1.5 758,976 + +0.2 758,984 + +0.1 759,055 + +0.4 759,055 + -1.1 759,055 + +0.2 759,055 + +0.9 759,118 + ABIE40_RS30355 0.21 -1.1 759,138 - ABIE40_RS30355 0.24 -1.9 759,138 - ABIE40_RS30355 0.24 -0.5 759,270 - ABIE40_RS30355 0.49 -0.1 759,553 + +0.6 759,553 + +0.7 759,553 + +0.7 759,554 - +0.5 759,554 - +0.9 759,571 + +1.7 759,572 - +0.7 759,572 - +1.1 759,572 - +0.1 759,572 - +1.3 759,736 + +1.3 759,736 + +1.7 759,736 + +0.5 759,830 + +0.5 759,831 - -0.8 759,831 - -0.0 759,877 + +0.9 759,877 + -0.3 759,977 - -2.9 759,977 - -1.3 760,072 - ABIE40_RS30360 0.15 +0.9 760,283 + ABIE40_RS30360 0.26 +0.4 760,283 + ABIE40_RS30360 0.26 -1.0 760,283 + ABIE40_RS30360 0.26 +0.4 760,283 + ABIE40_RS30360 0.26 +0.1 760,283 + ABIE40_RS30360 0.26 +0.6 760,283 + ABIE40_RS30360 0.26 -1.0 760,283 + ABIE40_RS30360 0.26 -1.6 760,284 - ABIE40_RS30360 0.26 +1.4 760,284 - ABIE40_RS30360 0.26 +0.0 760,284 - ABIE40_RS30360 0.26 +1.9 760,284 - ABIE40_RS30360 0.26 -1.6 760,284 - ABIE40_RS30360 0.26 +0.7 760,306 + ABIE40_RS30360 0.28 +0.7 760,306 + ABIE40_RS30360 0.28 +1.3 760,306 + ABIE40_RS30360 0.28 -1.7 760,306 + ABIE40_RS30360 0.28 +2.7 760,306 + ABIE40_RS30360 0.28 -1.0
Or see this region's nucleotide sequence