Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29885 and ABIE40_RS29890 are separated by 17 nucleotides ABIE40_RS29890 and ABIE40_RS29895 are separated by 66 nucleotides ABIE40_RS29895 and ABIE40_RS29900 are separated by 84 nucleotides
ABIE40_RS29885: ABIE40_RS29885 - DMT family transporter, at 669,438 to 670,322
_RS29885
ABIE40_RS29890: ABIE40_RS29890 - amino acid ABC transporter ATP-binding protein, at 670,340 to 671,086
_RS29890
ABIE40_RS29895: ABIE40_RS29895 - PfkB family carbohydrate kinase, at 671,153 to 671,965
_RS29895
ABIE40_RS29900: ABIE40_RS29900 - SIS domain-containing protein, at 672,050 to 673,063
_RS29900
Position (kb) 671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 670.203 kb on + strand, within ABIE40_RS29885 at 670.230 kb on + strand, within ABIE40_RS29885 at 670.230 kb on + strand, within ABIE40_RS29885 at 670.266 kb on + strand at 670.267 kb on - strand at 670.320 kb on + strand at 670.321 kb on - strand at 670.326 kb on - strand at 670.335 kb on - strand at 670.719 kb on - strand, within ABIE40_RS29890 at 670.757 kb on + strand, within ABIE40_RS29890 at 671.154 kb on + strand at 671.154 kb on + strand at 671.155 kb on - strand at 671.155 kb on - strand at 671.155 kb on - strand at 671.155 kb on - strand at 671.155 kb on - strand at 671.155 kb on - strand at 671.157 kb on - strand at 671.305 kb on + strand, within ABIE40_RS29895 at 671.422 kb on - strand, within ABIE40_RS29895 at 671.422 kb on - strand, within ABIE40_RS29895 at 671.425 kb on - strand, within ABIE40_RS29895 at 671.509 kb on + strand, within ABIE40_RS29895 at 671.520 kb on + strand, within ABIE40_RS29895 at 671.524 kb on + strand, within ABIE40_RS29895 at 671.524 kb on + strand, within ABIE40_RS29895 at 671.650 kb on - strand, within ABIE40_RS29895 at 671.676 kb on + strand, within ABIE40_RS29895 at 671.676 kb on + strand, within ABIE40_RS29895 at 671.677 kb on - strand, within ABIE40_RS29895 at 671.677 kb on - strand, within ABIE40_RS29895 at 671.719 kb on + strand, within ABIE40_RS29895 at 671.719 kb on + strand, within ABIE40_RS29895 at 671.720 kb on - strand, within ABIE40_RS29895 at 671.721 kb on + strand, within ABIE40_RS29895 at 671.721 kb on + strand, within ABIE40_RS29895 at 671.771 kb on - strand, within ABIE40_RS29895 at 671.771 kb on - strand, within ABIE40_RS29895 at 671.829 kb on + strand, within ABIE40_RS29895 at 671.861 kb on + strand, within ABIE40_RS29895 at 671.862 kb on - strand, within ABIE40_RS29895 at 671.969 kb on - strand at 671.974 kb on + strand at 671.993 kb on + strand at 672.043 kb on + strand at 672.054 kb on + strand at 672.055 kb on - strand at 672.055 kb on - strand at 672.069 kb on + strand at 672.070 kb on - strand at 672.073 kb on - strand at 672.122 kb on - strand at 672.183 kb on - strand, within ABIE40_RS29900 at 672.232 kb on + strand, within ABIE40_RS29900 at 672.233 kb on - strand, within ABIE40_RS29900 at 672.235 kb on - strand, within ABIE40_RS29900 at 672.235 kb on - strand, within ABIE40_RS29900 at 672.411 kb on + strand, within ABIE40_RS29900 at 672.412 kb on - strand, within ABIE40_RS29900 at 672.456 kb on + strand, within ABIE40_RS29900 at 672.456 kb on + strand, within ABIE40_RS29900 at 672.484 kb on - strand, within ABIE40_RS29900 at 672.567 kb on + strand, within ABIE40_RS29900 at 672.568 kb on - strand, within ABIE40_RS29900 at 672.568 kb on - strand, within ABIE40_RS29900 at 672.603 kb on - strand, within ABIE40_RS29900 at 672.646 kb on + strand, within ABIE40_RS29900 at 672.646 kb on + strand, within ABIE40_RS29900 at 672.646 kb on + strand, within ABIE40_RS29900 at 672.647 kb on - strand, within ABIE40_RS29900 at 672.647 kb on - strand, within ABIE40_RS29900 at 672.647 kb on - strand, within ABIE40_RS29900 at 672.809 kb on - strand, within ABIE40_RS29900 at 672.809 kb on - strand, within ABIE40_RS29900 at 672.893 kb on + strand, within ABIE40_RS29900 at 672.893 kb on + strand, within ABIE40_RS29900 at 672.894 kb on - strand, within ABIE40_RS29900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 670,203 + ABIE40_RS29885 0.86 +0.5 670,230 + ABIE40_RS29885 0.89 +1.1 670,230 + ABIE40_RS29885 0.89 -0.0 670,266 + +2.5 670,267 - -0.2 670,320 + -0.6 670,321 - -2.4 670,326 - -1.0 670,335 - -3.3 670,719 - ABIE40_RS29890 0.51 -1.6 670,757 + ABIE40_RS29890 0.56 -1.2 671,154 + +0.0 671,154 + +0.6 671,155 - -0.6 671,155 - -0.2 671,155 - +0.3 671,155 - -0.3 671,155 - +0.4 671,155 - +2.3 671,157 - -0.0 671,305 + ABIE40_RS29895 0.19 +1.0 671,422 - ABIE40_RS29895 0.33 -0.8 671,422 - ABIE40_RS29895 0.33 +0.6 671,425 - ABIE40_RS29895 0.33 +0.6 671,509 + ABIE40_RS29895 0.44 +1.0 671,520 + ABIE40_RS29895 0.45 -0.0 671,524 + ABIE40_RS29895 0.46 +0.5 671,524 + ABIE40_RS29895 0.46 +1.5 671,650 - ABIE40_RS29895 0.61 +0.8 671,676 + ABIE40_RS29895 0.64 +1.7 671,676 + ABIE40_RS29895 0.64 -0.6 671,677 - ABIE40_RS29895 0.64 -1.1 671,677 - ABIE40_RS29895 0.64 -1.4 671,719 + ABIE40_RS29895 0.70 +2.1 671,719 + ABIE40_RS29895 0.70 -0.6 671,720 - ABIE40_RS29895 0.70 +2.5 671,721 + ABIE40_RS29895 0.70 +0.3 671,721 + ABIE40_RS29895 0.70 +4.1 671,771 - ABIE40_RS29895 0.76 -0.6 671,771 - ABIE40_RS29895 0.76 +2.5 671,829 + ABIE40_RS29895 0.83 +0.2 671,861 + ABIE40_RS29895 0.87 +0.5 671,862 - ABIE40_RS29895 0.87 +1.0 671,969 - -0.2 671,974 + +0.2 671,993 + +0.3 672,043 + +2.5 672,054 + +0.2 672,055 - -0.2 672,055 - -0.0 672,069 + -1.0 672,070 - +1.4 672,073 - +0.6 672,122 - -0.5 672,183 - ABIE40_RS29900 0.13 +0.5 672,232 + ABIE40_RS29900 0.18 -0.8 672,233 - ABIE40_RS29900 0.18 -0.2 672,235 - ABIE40_RS29900 0.18 +0.3 672,235 - ABIE40_RS29900 0.18 +0.2 672,411 + ABIE40_RS29900 0.36 +0.1 672,412 - ABIE40_RS29900 0.36 +0.3 672,456 + ABIE40_RS29900 0.40 -0.6 672,456 + ABIE40_RS29900 0.40 -1.0 672,484 - ABIE40_RS29900 0.43 -0.2 672,567 + ABIE40_RS29900 0.51 -0.6 672,568 - ABIE40_RS29900 0.51 +0.2 672,568 - ABIE40_RS29900 0.51 +1.4 672,603 - ABIE40_RS29900 0.55 +1.7 672,646 + ABIE40_RS29900 0.59 -1.3 672,646 + ABIE40_RS29900 0.59 -1.7 672,646 + ABIE40_RS29900 0.59 -1.8 672,647 - ABIE40_RS29900 0.59 +1.0 672,647 - ABIE40_RS29900 0.59 -0.9 672,647 - ABIE40_RS29900 0.59 +0.3 672,809 - ABIE40_RS29900 0.75 +2.2 672,809 - ABIE40_RS29900 0.75 +0.2 672,893 + ABIE40_RS29900 0.83 +1.0 672,893 + ABIE40_RS29900 0.83 +0.6 672,894 - ABIE40_RS29900 0.83 -1.0
Or see this region's nucleotide sequence