Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29230 and ABIE40_RS29235 are separated by 3 nucleotides ABIE40_RS29235 and ABIE40_RS29240 are separated by 20 nucleotides ABIE40_RS29240 and ABIE40_RS29245 are separated by 189 nucleotides ABIE40_RS29245 and ABIE40_RS29250 are separated by 163 nucleotides ABIE40_RS29250 and ABIE40_RS29255 are separated by 77 nucleotides
ABIE40_RS29230: ABIE40_RS29230 - GNAT family N-acetyltransferase, at 545,976 to 546,251
_RS29230
ABIE40_RS29235: ABIE40_RS29235 - hypothetical protein, at 546,255 to 546,443
_RS29235
ABIE40_RS29240: ABIE40_RS29240 - cold-shock protein, at 546,464 to 546,667
_RS29240
ABIE40_RS29245: ABIE40_RS29245 - hypothetical protein, at 546,857 to 547,021
_RS29245
ABIE40_RS29250: ABIE40_RS29250 - TetR/AcrR family transcriptional regulator, at 547,185 to 547,724
_RS29250
ABIE40_RS29255: ABIE40_RS29255 - MFS transporter, at 547,802 to 549,253
_RS29255
Position (kb) 547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 546.201 kb on - strand, within ABIE40_RS29230 at 546.256 kb on + strand at 546.257 kb on - strand at 546.257 kb on - strand at 546.257 kb on - strand at 546.257 kb on - strand at 546.273 kb on - strand at 546.273 kb on - strand at 546.303 kb on + strand, within ABIE40_RS29235 at 546.304 kb on - strand, within ABIE40_RS29235 at 546.304 kb on - strand, within ABIE40_RS29235 at 546.325 kb on + strand, within ABIE40_RS29235 at 546.325 kb on + strand, within ABIE40_RS29235 at 546.325 kb on + strand, within ABIE40_RS29235 at 546.325 kb on + strand, within ABIE40_RS29235 at 546.326 kb on - strand, within ABIE40_RS29235 at 546.326 kb on - strand, within ABIE40_RS29235 at 546.326 kb on - strand, within ABIE40_RS29235 at 546.340 kb on + strand, within ABIE40_RS29235 at 546.341 kb on - strand, within ABIE40_RS29235 at 546.348 kb on - strand, within ABIE40_RS29235 at 546.461 kb on - strand at 546.525 kb on + strand, within ABIE40_RS29240 at 546.525 kb on + strand, within ABIE40_RS29240 at 546.538 kb on + strand, within ABIE40_RS29240 at 546.669 kb on - strand at 546.669 kb on - strand at 546.701 kb on + strand at 546.701 kb on + strand at 546.701 kb on + strand at 546.702 kb on - strand at 546.769 kb on + strand at 546.769 kb on + strand at 546.770 kb on - strand at 546.776 kb on + strand at 546.850 kb on - strand at 546.932 kb on + strand, within ABIE40_RS29245 at 546.933 kb on - strand, within ABIE40_RS29245 at 546.933 kb on - strand, within ABIE40_RS29245 at 547.019 kb on + strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.035 kb on - strand at 547.111 kb on + strand at 547.111 kb on + strand at 547.111 kb on + strand at 547.172 kb on + strand at 547.244 kb on + strand, within ABIE40_RS29250 at 547.262 kb on + strand, within ABIE40_RS29250 at 547.262 kb on + strand, within ABIE40_RS29250 at 547.269 kb on + strand, within ABIE40_RS29250 at 547.299 kb on + strand, within ABIE40_RS29250 at 547.299 kb on + strand, within ABIE40_RS29250 at 547.299 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.320 kb on + strand, within ABIE40_RS29250 at 547.339 kb on - strand, within ABIE40_RS29250 at 547.376 kb on + strand, within ABIE40_RS29250 at 547.505 kb on + strand, within ABIE40_RS29250 at 547.505 kb on + strand, within ABIE40_RS29250 at 547.539 kb on + strand, within ABIE40_RS29250 at 547.539 kb on + strand, within ABIE40_RS29250 at 547.788 kb on - strand at 547.929 kb on + strand at 547.929 kb on + strand at 547.930 kb on - strand at 547.930 kb on - strand at 547.971 kb on + strand, within ABIE40_RS29255 at 547.971 kb on + strand, within ABIE40_RS29255 at 547.972 kb on - strand, within ABIE40_RS29255 at 547.972 kb on - strand, within ABIE40_RS29255 at 547.995 kb on - strand, within ABIE40_RS29255 at 548.034 kb on + strand, within ABIE40_RS29255 at 548.034 kb on + strand, within ABIE40_RS29255 at 548.034 kb on + strand, within ABIE40_RS29255 at 548.035 kb on - strand, within ABIE40_RS29255 at 548.035 kb on - strand, within ABIE40_RS29255 at 548.035 kb on - strand, within ABIE40_RS29255 at 548.035 kb on - strand, within ABIE40_RS29255 at 548.035 kb on - strand, within ABIE40_RS29255 at 548.035 kb on - strand, within ABIE40_RS29255 at 548.036 kb on + strand, within ABIE40_RS29255 at 548.036 kb on + strand, within ABIE40_RS29255 at 548.037 kb on - strand, within ABIE40_RS29255 at 548.125 kb on - strand, within ABIE40_RS29255 at 548.139 kb on + strand, within ABIE40_RS29255 at 548.237 kb on + strand, within ABIE40_RS29255 at 548.237 kb on + strand, within ABIE40_RS29255 at 548.238 kb on - strand, within ABIE40_RS29255 at 548.238 kb on - strand, within ABIE40_RS29255 at 548.238 kb on - strand, within ABIE40_RS29255 at 548.294 kb on - strand, within ABIE40_RS29255 at 548.294 kb on - strand, within ABIE40_RS29255 at 548.332 kb on - strand, within ABIE40_RS29255 at 548.413 kb on + strand, within ABIE40_RS29255 at 548.413 kb on + strand, within ABIE40_RS29255 at 548.414 kb on - strand, within ABIE40_RS29255 at 548.414 kb on - strand, within ABIE40_RS29255 at 548.414 kb on - strand, within ABIE40_RS29255 at 548.666 kb on + strand, within ABIE40_RS29255
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 546,201 - ABIE40_RS29230 0.82 +2.4 546,256 + +0.8 546,257 - +1.4 546,257 - +0.6 546,257 - +2.1 546,257 - -1.8 546,273 - +1.5 546,273 - -1.0 546,303 + ABIE40_RS29235 0.25 -0.2 546,304 - ABIE40_RS29235 0.26 +0.2 546,304 - ABIE40_RS29235 0.26 -1.4 546,325 + ABIE40_RS29235 0.37 +0.2 546,325 + ABIE40_RS29235 0.37 +0.2 546,325 + ABIE40_RS29235 0.37 -1.1 546,325 + ABIE40_RS29235 0.37 +1.5 546,326 - ABIE40_RS29235 0.38 -1.8 546,326 - ABIE40_RS29235 0.38 -1.4 546,326 - ABIE40_RS29235 0.38 -0.9 546,340 + ABIE40_RS29235 0.45 +0.4 546,341 - ABIE40_RS29235 0.46 -1.0 546,348 - ABIE40_RS29235 0.49 -2.3 546,461 - -0.9 546,525 + ABIE40_RS29240 0.30 +0.2 546,525 + ABIE40_RS29240 0.30 +0.9 546,538 + ABIE40_RS29240 0.36 +1.4 546,669 - -0.5 546,669 - +1.2 546,701 + +2.4 546,701 + -0.6 546,701 + +0.8 546,702 - -1.6 546,769 + +0.5 546,769 + +0.6 546,770 - +0.8 546,776 + +0.1 546,850 - +0.5 546,932 + ABIE40_RS29245 0.45 +0.1 546,933 - ABIE40_RS29245 0.46 -0.5 546,933 - ABIE40_RS29245 0.46 -0.8 547,019 + +1.4 547,020 - +1.2 547,020 - -1.3 547,035 - -1.4 547,111 + +2.2 547,111 + -2.8 547,111 + -1.1 547,172 + +0.5 547,244 + ABIE40_RS29250 0.11 +0.1 547,262 + ABIE40_RS29250 0.14 -0.5 547,262 + ABIE40_RS29250 0.14 +0.2 547,269 + ABIE40_RS29250 0.16 +0.6 547,299 + ABIE40_RS29250 0.21 -0.8 547,299 + ABIE40_RS29250 0.21 +0.2 547,299 + ABIE40_RS29250 0.21 +1.4 547,320 + ABIE40_RS29250 0.25 +0.2 547,320 + ABIE40_RS29250 0.25 +0.3 547,320 + ABIE40_RS29250 0.25 +1.7 547,320 + ABIE40_RS29250 0.25 +1.4 547,320 + ABIE40_RS29250 0.25 +0.3 547,320 + ABIE40_RS29250 0.25 -0.3 547,320 + ABIE40_RS29250 0.25 +0.6 547,320 + ABIE40_RS29250 0.25 +1.6 547,339 - ABIE40_RS29250 0.29 -0.2 547,376 + ABIE40_RS29250 0.35 +2.9 547,505 + ABIE40_RS29250 0.59 +0.8 547,505 + ABIE40_RS29250 0.59 +1.1 547,539 + ABIE40_RS29250 0.66 +0.2 547,539 + ABIE40_RS29250 0.66 +0.5 547,788 - -0.5 547,929 + +1.1 547,929 + -0.1 547,930 - +0.8 547,930 - +0.1 547,971 + ABIE40_RS29255 0.12 -0.9 547,971 + ABIE40_RS29255 0.12 -0.9 547,972 - ABIE40_RS29255 0.12 +0.8 547,972 - ABIE40_RS29255 0.12 -0.9 547,995 - ABIE40_RS29255 0.13 +1.4 548,034 + ABIE40_RS29255 0.16 -0.6 548,034 + ABIE40_RS29255 0.16 -0.2 548,034 + ABIE40_RS29255 0.16 +0.8 548,035 - ABIE40_RS29255 0.16 -1.4 548,035 - ABIE40_RS29255 0.16 +0.2 548,035 - ABIE40_RS29255 0.16 +3.0 548,035 - ABIE40_RS29255 0.16 +0.4 548,035 - ABIE40_RS29255 0.16 +0.6 548,035 - ABIE40_RS29255 0.16 -0.6 548,036 + ABIE40_RS29255 0.16 +1.8 548,036 + ABIE40_RS29255 0.16 +0.2 548,037 - ABIE40_RS29255 0.16 +1.1 548,125 - ABIE40_RS29255 0.22 +2.4 548,139 + ABIE40_RS29255 0.23 -2.3 548,237 + ABIE40_RS29255 0.30 +3.4 548,237 + ABIE40_RS29255 0.30 +0.3 548,238 - ABIE40_RS29255 0.30 +0.4 548,238 - ABIE40_RS29255 0.30 +0.8 548,238 - ABIE40_RS29255 0.30 +0.1 548,294 - ABIE40_RS29255 0.34 -0.4 548,294 - ABIE40_RS29255 0.34 -0.4 548,332 - ABIE40_RS29255 0.37 +0.4 548,413 + ABIE40_RS29255 0.42 +3.4 548,413 + ABIE40_RS29255 0.42 +1.8 548,414 - ABIE40_RS29255 0.42 -1.1 548,414 - ABIE40_RS29255 0.42 -1.7 548,414 - ABIE40_RS29255 0.42 -1.7 548,666 + ABIE40_RS29255 0.60 +0.5
Or see this region's nucleotide sequence