Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28750 and ABIE40_RS28755 overlap by 4 nucleotides ABIE40_RS28755 and ABIE40_RS28760 are separated by 62 nucleotides ABIE40_RS28760 and ABIE40_RS28765 overlap by 4 nucleotides ABIE40_RS28765 and ABIE40_RS28770 are separated by 12 nucleotides
ABIE40_RS28750: ABIE40_RS28750 - chemotaxis protein CheA, at 448,792 to 450,753
_RS28750
ABIE40_RS28755: ABIE40_RS28755 - hypothetical protein, at 450,750 to 451,031
_RS28755
ABIE40_RS28760: ABIE40_RS28760 - response regulator, at 451,094 to 451,477
_RS28760
ABIE40_RS28765: ABIE40_RS28765 - chemotaxis protein CheX, at 451,474 to 452,103
_RS28765
ABIE40_RS28770: ABIE40_RS28770 - PAS domain-containing protein, at 452,116 to 453,630
_RS28770
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 450.543 kb on + strand, within ABIE40_RS28750 at 450.570 kb on - strand at 450.570 kb on - strand at 450.892 kb on + strand, within ABIE40_RS28755 at 450.905 kb on + strand, within ABIE40_RS28755 at 450.905 kb on + strand, within ABIE40_RS28755 at 450.905 kb on + strand, within ABIE40_RS28755 at 450.906 kb on - strand, within ABIE40_RS28755 at 450.906 kb on - strand, within ABIE40_RS28755 at 450.906 kb on - strand, within ABIE40_RS28755 at 450.906 kb on - strand, within ABIE40_RS28755 at 450.941 kb on - strand, within ABIE40_RS28755 at 450.965 kb on - strand, within ABIE40_RS28755 at 451.029 kb on + strand at 451.052 kb on + strand at 451.052 kb on + strand at 451.052 kb on + strand at 451.053 kb on - strand at 451.053 kb on - strand at 451.264 kb on + strand, within ABIE40_RS28760 at 451.264 kb on + strand, within ABIE40_RS28760 at 451.264 kb on + strand, within ABIE40_RS28760 at 451.265 kb on - strand, within ABIE40_RS28760 at 451.265 kb on - strand, within ABIE40_RS28760 at 451.425 kb on + strand, within ABIE40_RS28760 at 451.459 kb on + strand at 451.474 kb on - strand at 451.485 kb on + strand at 451.486 kb on - strand at 451.486 kb on - strand at 451.490 kb on + strand at 451.899 kb on - strand, within ABIE40_RS28765 at 452.020 kb on + strand, within ABIE40_RS28765 at 452.179 kb on - strand at 452.434 kb on + strand, within ABIE40_RS28770 at 452.435 kb on - strand, within ABIE40_RS28770 at 452.435 kb on - strand, within ABIE40_RS28770 at 452.435 kb on - strand, within ABIE40_RS28770 at 452.529 kb on + strand, within ABIE40_RS28770 at 452.544 kb on + strand, within ABIE40_RS28770 at 452.599 kb on - strand, within ABIE40_RS28770 at 452.749 kb on - strand, within ABIE40_RS28770 at 452.845 kb on + strand, within ABIE40_RS28770 at 453.072 kb on + strand, within ABIE40_RS28770 at 453.072 kb on + strand, within ABIE40_RS28770 at 453.072 kb on + strand, within ABIE40_RS28770 at 453.073 kb on - strand, within ABIE40_RS28770 at 453.094 kb on - strand, within ABIE40_RS28770 at 453.094 kb on - strand, within ABIE40_RS28770
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 450,543 + ABIE40_RS28750 0.89 -1.7 450,570 - +1.0 450,570 - +2.4 450,892 + ABIE40_RS28755 0.50 +0.1 450,905 + ABIE40_RS28755 0.55 +0.1 450,905 + ABIE40_RS28755 0.55 -2.2 450,905 + ABIE40_RS28755 0.55 +0.2 450,906 - ABIE40_RS28755 0.55 +0.4 450,906 - ABIE40_RS28755 0.55 +0.8 450,906 - ABIE40_RS28755 0.55 -1.0 450,906 - ABIE40_RS28755 0.55 -1.3 450,941 - ABIE40_RS28755 0.68 +1.4 450,965 - ABIE40_RS28755 0.76 +0.6 451,029 + +0.9 451,052 + +0.8 451,052 + -1.4 451,052 + +0.4 451,053 - -1.7 451,053 - +0.0 451,264 + ABIE40_RS28760 0.44 +1.1 451,264 + ABIE40_RS28760 0.44 -1.5 451,264 + ABIE40_RS28760 0.44 +0.8 451,265 - ABIE40_RS28760 0.45 -1.1 451,265 - ABIE40_RS28760 0.45 -1.3 451,425 + ABIE40_RS28760 0.86 -0.7 451,459 + +3.9 451,474 - +0.5 451,485 + -1.3 451,486 - -1.0 451,486 - -2.5 451,490 + -1.2 451,899 - ABIE40_RS28765 0.67 +0.9 452,020 + ABIE40_RS28765 0.87 -0.1 452,179 - +2.4 452,434 + ABIE40_RS28770 0.21 -0.6 452,435 - ABIE40_RS28770 0.21 +0.4 452,435 - ABIE40_RS28770 0.21 +0.1 452,435 - ABIE40_RS28770 0.21 -0.2 452,529 + ABIE40_RS28770 0.27 +1.1 452,544 + ABIE40_RS28770 0.28 +2.4 452,599 - ABIE40_RS28770 0.32 +0.4 452,749 - ABIE40_RS28770 0.42 -1.2 452,845 + ABIE40_RS28770 0.48 +1.0 453,072 + ABIE40_RS28770 0.63 +1.4 453,072 + ABIE40_RS28770 0.63 -0.1 453,072 + ABIE40_RS28770 0.63 -1.2 453,073 - ABIE40_RS28770 0.63 +2.4 453,094 - ABIE40_RS28770 0.65 +2.4 453,094 - ABIE40_RS28770 0.65 -1.5
Or see this region's nucleotide sequence