Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28355 and ABIE40_RS28360 are separated by 135 nucleotides ABIE40_RS28360 and ABIE40_RS28365 are separated by 319 nucleotides ABIE40_RS28365 and ABIE40_RS28370 are separated by 228 nucleotides ABIE40_RS28370 and ABIE40_RS28375 are separated by 389 nucleotides
ABIE40_RS28355: ABIE40_RS28355 - OB-fold nucleic acid binding domain-containing protein, at 374,425 to 376,137
_RS28355
ABIE40_RS28360: ABIE40_RS28360 - hypothetical protein, at 376,273 to 376,503
_RS28360
ABIE40_RS28365: ABIE40_RS28365 - DUF982 domain-containing protein, at 376,823 to 377,065
_RS28365
ABIE40_RS28370: ABIE40_RS28370 - oxidoreductase, at 377,294 to 377,478
_RS28370
ABIE40_RS28375: ABIE40_RS28375 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 377,868 to 380,303
_RS28375
Position (kb) 376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 375.915 kb on + strand, within ABIE40_RS28355 at 375.915 kb on + strand, within ABIE40_RS28355 at 375.916 kb on - strand, within ABIE40_RS28355 at 375.916 kb on - strand, within ABIE40_RS28355 at 375.946 kb on + strand, within ABIE40_RS28355 at 375.946 kb on + strand, within ABIE40_RS28355 at 375.947 kb on - strand, within ABIE40_RS28355 at 375.949 kb on - strand, within ABIE40_RS28355 at 375.949 kb on - strand, within ABIE40_RS28355 at 375.998 kb on + strand at 376.268 kb on - strand at 376.275 kb on - strand at 376.275 kb on - strand at 376.275 kb on - strand at 376.275 kb on - strand at 376.390 kb on + strand, within ABIE40_RS28360 at 376.390 kb on + strand, within ABIE40_RS28360 at 376.396 kb on + strand, within ABIE40_RS28360 at 376.396 kb on + strand, within ABIE40_RS28360 at 376.396 kb on + strand, within ABIE40_RS28360 at 376.396 kb on + strand, within ABIE40_RS28360 at 376.396 kb on + strand, within ABIE40_RS28360 at 376.396 kb on + strand, within ABIE40_RS28360 at 376.397 kb on - strand, within ABIE40_RS28360 at 376.397 kb on - strand, within ABIE40_RS28360 at 376.397 kb on - strand, within ABIE40_RS28360 at 376.397 kb on - strand, within ABIE40_RS28360 at 376.583 kb on - strand at 376.598 kb on + strand at 376.621 kb on + strand at 376.666 kb on - strand at 376.666 kb on - strand at 376.748 kb on + strand at 376.778 kb on + strand at 376.779 kb on - strand at 376.779 kb on - strand at 376.779 kb on - strand at 376.779 kb on - strand at 376.812 kb on - strand at 376.822 kb on + strand at 376.823 kb on - strand at 376.823 kb on - strand at 376.843 kb on + strand at 376.925 kb on - strand, within ABIE40_RS28365 at 376.975 kb on + strand, within ABIE40_RS28365 at 376.976 kb on - strand, within ABIE40_RS28365 at 376.976 kb on - strand, within ABIE40_RS28365 at 376.976 kb on - strand, within ABIE40_RS28365 at 377.185 kb on + strand at 377.186 kb on - strand at 377.204 kb on - strand at 377.211 kb on + strand at 377.212 kb on - strand at 377.212 kb on - strand at 377.430 kb on + strand, within ABIE40_RS28370 at 377.439 kb on - strand, within ABIE40_RS28370 at 377.595 kb on + strand at 377.677 kb on - strand at 377.677 kb on - strand at 377.677 kb on - strand at 377.678 kb on + strand at 377.678 kb on + strand at 377.679 kb on - strand at 377.679 kb on - strand at 377.679 kb on - strand at 377.679 kb on - strand at 377.679 kb on - strand at 377.679 kb on - strand at 377.679 kb on - strand at 377.679 kb on - strand at 377.713 kb on + strand at 377.713 kb on + strand at 377.714 kb on - strand at 377.714 kb on - strand at 377.742 kb on + strand at 377.742 kb on + strand at 377.742 kb on + strand at 377.742 kb on + strand at 377.743 kb on - strand at 377.743 kb on - strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.746 kb on + strand at 377.747 kb on - strand at 377.780 kb on + strand at 377.780 kb on + strand at 377.782 kb on - strand at 377.782 kb on - strand at 377.785 kb on + strand at 377.786 kb on - strand at 377.786 kb on - strand at 377.929 kb on + strand at 377.979 kb on + strand at 377.979 kb on + strand at 377.979 kb on + strand at 377.979 kb on + strand at 377.979 kb on + strand at 377.980 kb on - strand at 377.980 kb on - strand at 377.980 kb on - strand at 377.980 kb on - strand at 377.980 kb on - strand at 377.980 kb on - strand at 377.980 kb on - strand at 377.980 kb on - strand at 377.982 kb on + strand at 377.987 kb on + strand at 378.032 kb on + strand at 378.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 375,915 + ABIE40_RS28355 0.87 +0.5 375,915 + ABIE40_RS28355 0.87 +0.7 375,916 - ABIE40_RS28355 0.87 +0.4 375,916 - ABIE40_RS28355 0.87 -0.2 375,946 + ABIE40_RS28355 0.89 +0.3 375,946 + ABIE40_RS28355 0.89 -0.0 375,947 - ABIE40_RS28355 0.89 +0.4 375,949 - ABIE40_RS28355 0.89 -1.4 375,949 - ABIE40_RS28355 0.89 -2.2 375,998 + +0.6 376,268 - +0.5 376,275 - +0.4 376,275 - +0.6 376,275 - +1.4 376,275 - +0.7 376,390 + ABIE40_RS28360 0.51 -1.3 376,390 + ABIE40_RS28360 0.51 -1.3 376,396 + ABIE40_RS28360 0.53 +0.1 376,396 + ABIE40_RS28360 0.53 +1.7 376,396 + ABIE40_RS28360 0.53 +0.6 376,396 + ABIE40_RS28360 0.53 +1.4 376,396 + ABIE40_RS28360 0.53 -0.8 376,396 + ABIE40_RS28360 0.53 +0.9 376,397 - ABIE40_RS28360 0.54 +0.6 376,397 - ABIE40_RS28360 0.54 -1.0 376,397 - ABIE40_RS28360 0.54 +0.2 376,397 - ABIE40_RS28360 0.54 +1.4 376,583 - +3.2 376,598 + -0.4 376,621 + +1.4 376,666 - +0.8 376,666 - +1.6 376,748 + -0.3 376,778 + +2.4 376,779 - +0.5 376,779 - +0.4 376,779 - +0.4 376,779 - -0.4 376,812 - -0.0 376,822 + +0.4 376,823 - -1.0 376,823 - -1.3 376,843 + -2.0 376,925 - ABIE40_RS28365 0.42 +0.0 376,975 + ABIE40_RS28365 0.63 -2.2 376,976 - ABIE40_RS28365 0.63 -3.0 376,976 - ABIE40_RS28365 0.63 +0.8 376,976 - ABIE40_RS28365 0.63 -1.0 377,185 + -0.8 377,186 - +0.6 377,204 - +1.8 377,211 + -1.8 377,212 - +2.0 377,212 - -0.1 377,430 + ABIE40_RS28370 0.74 -0.3 377,439 - ABIE40_RS28370 0.78 -0.2 377,595 + -1.4 377,677 - +0.2 377,677 - -0.9 377,677 - -2.3 377,678 + +0.6 377,678 + -0.3 377,679 - +1.4 377,679 - +0.4 377,679 - +0.5 377,679 - +0.0 377,679 - +1.4 377,679 - -2.2 377,679 - +1.4 377,679 - -0.1 377,713 + +1.4 377,713 + +0.7 377,714 - +2.7 377,714 - +1.4 377,742 + -2.7 377,742 + +0.4 377,742 + +0.6 377,742 + -0.6 377,743 - -0.4 377,743 - +0.5 377,746 + -1.7 377,746 + +0.0 377,746 + +0.7 377,746 + -0.7 377,746 + +0.0 377,746 + -0.2 377,746 + +1.1 377,746 + +0.0 377,746 + +0.1 377,746 + +0.1 377,747 - -0.8 377,780 + +1.1 377,780 + -0.4 377,782 - -0.7 377,782 - +0.6 377,785 + -0.3 377,786 - -0.1 377,786 - +1.8 377,929 + +1.5 377,979 + -1.4 377,979 + -0.9 377,979 + +0.4 377,979 + -0.4 377,979 + +0.4 377,980 - +0.4 377,980 - +1.4 377,980 - -0.3 377,980 - -1.2 377,980 - +0.1 377,980 - +0.6 377,980 - -1.0 377,980 - -0.5 377,982 + +1.4 377,987 + -0.8 378,032 + +0.8 378,057 + +0.6
Or see this region's nucleotide sequence