Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27710 and ABIE40_RS27715 are separated by 587 nucleotides ABIE40_RS27715 and ABIE40_RS27720 are separated by 55 nucleotides ABIE40_RS27720 and ABIE40_RS27725 are separated by 121 nucleotides ABIE40_RS27725 and ABIE40_RS27730 are separated by 217 nucleotides
ABIE40_RS27710: ABIE40_RS27710 - methyl-accepting chemotaxis protein, at 251,734 to 253,977
_RS27710
ABIE40_RS27715: ABIE40_RS27715 - hypothetical protein, at 254,565 to 254,717
_RS27715
ABIE40_RS27720: ABIE40_RS27720 - DUF1236 domain-containing protein, at 254,773 to 255,639
_RS27720
ABIE40_RS27725: ABIE40_RS27725 - DUF1236 domain-containing protein, at 255,761 to 256,045
_RS27725
ABIE40_RS27730: ABIE40_RS27730 - hypothetical protein, at 256,263 to 256,424
_RS27730
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 253.978 kb on - strand at 253.978 kb on - strand at 253.992 kb on + strand at 253.992 kb on + strand at 253.992 kb on + strand at 253.993 kb on - strand at 254.213 kb on - strand at 254.224 kb on + strand at 254.225 kb on - strand at 254.336 kb on + strand at 254.463 kb on + strand at 254.463 kb on + strand at 254.463 kb on + strand at 254.464 kb on - strand at 254.474 kb on + strand at 254.500 kb on + strand at 254.500 kb on + strand at 254.555 kb on + strand at 254.556 kb on - strand at 254.556 kb on - strand at 254.559 kb on - strand at 254.563 kb on + strand at 254.563 kb on + strand at 254.564 kb on - strand at 254.574 kb on + strand at 254.574 kb on + strand at 254.574 kb on + strand at 254.575 kb on - strand at 254.575 kb on - strand at 254.710 kb on + strand at 254.711 kb on - strand at 254.774 kb on + strand at 254.789 kb on + strand at 254.789 kb on + strand at 255.022 kb on + strand, within ABIE40_RS27720 at 255.072 kb on + strand, within ABIE40_RS27720 at 255.072 kb on + strand, within ABIE40_RS27720 at 255.097 kb on - strand, within ABIE40_RS27720 at 255.097 kb on - strand, within ABIE40_RS27720 at 255.189 kb on + strand, within ABIE40_RS27720 at 255.190 kb on - strand, within ABIE40_RS27720 at 255.595 kb on + strand at 255.596 kb on - strand at 255.601 kb on + strand at 255.602 kb on - strand at 255.644 kb on + strand at 255.645 kb on - strand at 255.678 kb on - strand at 255.721 kb on + strand at 255.721 kb on + strand at 255.722 kb on - strand at 255.763 kb on - strand at 255.837 kb on + strand, within ABIE40_RS27725 at 255.838 kb on - strand, within ABIE40_RS27725 at 255.959 kb on + strand, within ABIE40_RS27725 at 255.960 kb on - strand, within ABIE40_RS27725 at 256.039 kb on + strand at 256.040 kb on - strand at 256.148 kb on + strand at 256.424 kb on + strand at 256.424 kb on + strand at 256.425 kb on - strand at 256.425 kb on - strand at 256.425 kb on - strand at 256.425 kb on - strand at 256.500 kb on + strand at 256.500 kb on + strand at 256.500 kb on + strand at 256.500 kb on + strand at 256.501 kb on - strand at 256.501 kb on - strand at 256.501 kb on - strand at 256.501 kb on - strand at 256.501 kb on - strand at 256.566 kb on + strand at 256.575 kb on + strand at 256.575 kb on + strand at 256.576 kb on - strand at 256.576 kb on - strand at 256.576 kb on - strand at 256.612 kb on + strand at 256.613 kb on - strand at 256.613 kb on - strand at 256.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 253,978 - -1.3 253,978 - +1.1 253,992 + +1.5 253,992 + +2.5 253,992 + +3.1 253,993 - +1.3 254,213 - +3.5 254,224 + -1.5 254,225 - -0.1 254,336 + +0.1 254,463 + +0.4 254,463 + +2.5 254,463 + -0.6 254,464 - +1.0 254,474 + -1.7 254,500 + +0.5 254,500 + -1.1 254,555 + -0.4 254,556 - +2.3 254,556 - +0.6 254,559 - -0.9 254,563 + -0.6 254,563 + +0.8 254,564 - +1.9 254,574 + +2.5 254,574 + -0.4 254,574 + -1.2 254,575 - +0.5 254,575 - +0.6 254,710 + +0.9 254,711 - +0.5 254,774 + -0.1 254,789 + +1.5 254,789 + +1.2 255,022 + ABIE40_RS27720 0.29 +1.1 255,072 + ABIE40_RS27720 0.34 -1.9 255,072 + ABIE40_RS27720 0.34 +0.6 255,097 - ABIE40_RS27720 0.37 -0.8 255,097 - ABIE40_RS27720 0.37 +0.5 255,189 + ABIE40_RS27720 0.48 +0.7 255,190 - ABIE40_RS27720 0.48 +1.3 255,595 + +1.5 255,596 - +0.9 255,601 + -0.6 255,602 - +0.9 255,644 + -0.5 255,645 - -0.5 255,678 - -1.7 255,721 + -1.6 255,721 + -1.8 255,722 - +1.3 255,763 - +0.5 255,837 + ABIE40_RS27725 0.27 +1.5 255,838 - ABIE40_RS27725 0.27 +1.2 255,959 + ABIE40_RS27725 0.69 +0.9 255,960 - ABIE40_RS27725 0.70 -0.3 256,039 + -0.2 256,040 - -2.2 256,148 + +0.5 256,424 + +0.9 256,424 + -0.5 256,425 - -0.0 256,425 - -1.9 256,425 - +0.4 256,425 - -0.1 256,500 + +0.3 256,500 + +0.0 256,500 + -0.1 256,500 + -0.1 256,501 - +0.9 256,501 - -0.5 256,501 - -0.1 256,501 - -0.4 256,501 - -0.1 256,566 + +0.2 256,575 + +0.9 256,575 + -0.2 256,576 - +0.1 256,576 - -1.9 256,576 - +0.5 256,612 + +1.5 256,613 - -0.3 256,613 - +0.9 256,613 - -1.9
Or see this region's nucleotide sequence