Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS24235 and ABIE40_RS24240 are separated by 41 nucleotides ABIE40_RS24240 and ABIE40_RS24245 are separated by 107 nucleotides ABIE40_RS24245 and ABIE40_RS24250 are separated by 147 nucleotides ABIE40_RS24250 and ABIE40_RS24255 are separated by 81 nucleotides ABIE40_RS24255 and ABIE40_RS24260 are separated by 39 nucleotides
ABIE40_RS24235: ABIE40_RS24235 - MYG1 family protein, at 995,402 to 996,325
_RS24235
ABIE40_RS24240: ABIE40_RS24240 - hypothetical protein, at 996,367 to 996,720
_RS24240
ABIE40_RS24245: ABIE40_RS24245 - helix-turn-helix domain-containing protein, at 996,828 to 997,028
_RS24245
ABIE40_RS24250: ABIE40_RS24250 - response regulator, at 997,176 to 997,553
_RS24250
ABIE40_RS24255: ABIE40_RS24255 - hypothetical protein, at 997,635 to 997,757
_RS24255
ABIE40_RS24260: ABIE40_RS24260 - SDR family oxidoreductase, at 997,797 to 998,684
_RS24260
Position (kb) 996
997
998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 996.227 kb on - strand, within ABIE40_RS24235 at 996.227 kb on - strand, within ABIE40_RS24235 at 996.368 kb on + strand at 996.368 kb on + strand at 996.369 kb on - strand at 996.369 kb on - strand at 996.624 kb on - strand, within ABIE40_RS24240 at 996.632 kb on + strand, within ABIE40_RS24240 at 996.632 kb on + strand, within ABIE40_RS24240 at 996.632 kb on + strand, within ABIE40_RS24240 at 996.632 kb on + strand, within ABIE40_RS24240 at 996.632 kb on + strand, within ABIE40_RS24240 at 996.633 kb on - strand, within ABIE40_RS24240 at 996.633 kb on - strand, within ABIE40_RS24240 at 996.635 kb on + strand, within ABIE40_RS24240 at 996.635 kb on + strand, within ABIE40_RS24240 at 996.636 kb on - strand, within ABIE40_RS24240 at 996.636 kb on - strand, within ABIE40_RS24240 at 996.756 kb on + strand at 996.757 kb on - strand at 996.757 kb on - strand at 996.757 kb on - strand at 996.757 kb on - strand at 996.762 kb on - strand at 996.880 kb on + strand, within ABIE40_RS24245 at 996.880 kb on + strand, within ABIE40_RS24245 at 996.880 kb on + strand, within ABIE40_RS24245 at 997.028 kb on + strand at 997.028 kb on + strand at 997.029 kb on - strand at 997.029 kb on - strand at 997.036 kb on - strand at 997.036 kb on - strand at 997.038 kb on + strand at 997.039 kb on - strand at 997.039 kb on - strand at 997.039 kb on - strand at 997.044 kb on - strand at 997.044 kb on - strand at 997.044 kb on - strand at 997.169 kb on + strand at 997.169 kb on + strand at 997.170 kb on - strand at 997.184 kb on - strand at 997.184 kb on - strand at 997.184 kb on - strand at 997.184 kb on - strand at 997.184 kb on - strand at 997.231 kb on + strand, within ABIE40_RS24250 at 997.231 kb on + strand, within ABIE40_RS24250 at 997.231 kb on + strand, within ABIE40_RS24250 at 997.426 kb on + strand, within ABIE40_RS24250 at 997.551 kb on + strand at 997.551 kb on + strand at 997.552 kb on - strand at 997.591 kb on + strand at 997.592 kb on - strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.641 kb on + strand at 997.642 kb on - strand at 997.642 kb on - strand at 997.642 kb on - strand at 997.642 kb on - strand at 997.642 kb on - strand at 997.642 kb on - strand at 997.671 kb on + strand, within ABIE40_RS24255 at 997.671 kb on + strand, within ABIE40_RS24255 at 997.672 kb on - strand, within ABIE40_RS24255 at 997.756 kb on - strand at 997.756 kb on - strand at 997.804 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 996,227 - ABIE40_RS24235 0.89 +0.0 996,227 - ABIE40_RS24235 0.89 -1.8 996,368 + -0.1 996,368 + +2.2 996,369 - +1.1 996,369 - +0.1 996,624 - ABIE40_RS24240 0.73 +1.3 996,632 + ABIE40_RS24240 0.75 -0.1 996,632 + ABIE40_RS24240 0.75 -2.2 996,632 + ABIE40_RS24240 0.75 +0.6 996,632 + ABIE40_RS24240 0.75 +0.6 996,632 + ABIE40_RS24240 0.75 +2.2 996,633 - ABIE40_RS24240 0.75 +0.7 996,633 - ABIE40_RS24240 0.75 +0.2 996,635 + ABIE40_RS24240 0.76 -1.1 996,635 + ABIE40_RS24240 0.76 -0.8 996,636 - ABIE40_RS24240 0.76 +0.1 996,636 - ABIE40_RS24240 0.76 +0.1 996,756 + -1.5 996,757 - -0.1 996,757 - +0.1 996,757 - +1.7 996,757 - +0.2 996,762 - -0.0 996,880 + ABIE40_RS24245 0.26 -1.7 996,880 + ABIE40_RS24245 0.26 -0.1 996,880 + ABIE40_RS24245 0.26 -3.5 997,028 + -0.7 997,028 + -0.4 997,029 - -1.2 997,029 - -1.1 997,036 - +0.2 997,036 - -0.2 997,038 + +1.9 997,039 - -0.1 997,039 - +0.9 997,039 - -0.1 997,044 - -0.4 997,044 - +0.6 997,044 - -1.2 997,169 + +0.3 997,169 + -0.2 997,170 - +0.1 997,184 - -0.5 997,184 - -2.5 997,184 - -0.7 997,184 - +0.2 997,184 - -1.5 997,231 + ABIE40_RS24250 0.15 +0.2 997,231 + ABIE40_RS24250 0.15 +1.0 997,231 + ABIE40_RS24250 0.15 +1.2 997,426 + ABIE40_RS24250 0.66 -0.3 997,551 + +0.2 997,551 + -0.5 997,552 - +0.6 997,591 + +1.5 997,592 - -2.5 997,641 + -0.3 997,641 + +0.1 997,641 + +0.4 997,641 + +0.2 997,641 + -0.6 997,641 + +1.4 997,641 + +0.6 997,641 + +0.3 997,641 + +1.5 997,641 + +0.9 997,642 - -0.8 997,642 - +0.5 997,642 - -0.4 997,642 - +0.3 997,642 - -2.5 997,642 - -0.7 997,671 + ABIE40_RS24255 0.29 +2.2 997,671 + ABIE40_RS24255 0.29 -0.1 997,672 - ABIE40_RS24255 0.30 +1.1 997,756 - +0.5 997,756 - +1.2 997,804 + +1.0
Or see this region's nucleotide sequence