Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23930 and ABIE40_RS23935 are separated by 34 nucleotides ABIE40_RS23935 and ABIE40_RS23940 are separated by 126 nucleotides ABIE40_RS23940 and ABIE40_RS23945 are separated by 63 nucleotides
ABIE40_RS23930: ABIE40_RS23930 - N-methyl-L-tryptophan oxidase, at 929,830 to 930,972
_RS23930
ABIE40_RS23935: ABIE40_RS23935 - DUF308 domain-containing protein, at 931,007 to 931,567
_RS23935
ABIE40_RS23940: ABIE40_RS23940 - TetR/AcrR family transcriptional regulator, at 931,694 to 932,272
_RS23940
ABIE40_RS23945: ABIE40_RS23945 - glutathione-dependent disulfide-bond oxidoreductase, at 932,336 to 933,229
_RS23945
Position (kb) 931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 930.999 kb on + strand at 930.999 kb on + strand at 931.068 kb on + strand, within ABIE40_RS23935 at 931.068 kb on + strand, within ABIE40_RS23935 at 931.068 kb on + strand, within ABIE40_RS23935 at 931.068 kb on + strand, within ABIE40_RS23935 at 931.068 kb on + strand, within ABIE40_RS23935 at 931.068 kb on + strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.069 kb on - strand, within ABIE40_RS23935 at 931.089 kb on + strand, within ABIE40_RS23935 at 931.228 kb on + strand, within ABIE40_RS23935 at 931.229 kb on - strand, within ABIE40_RS23935 at 931.230 kb on + strand, within ABIE40_RS23935 at 931.230 kb on + strand, within ABIE40_RS23935 at 931.230 kb on + strand, within ABIE40_RS23935 at 931.230 kb on + strand, within ABIE40_RS23935 at 931.231 kb on - strand, within ABIE40_RS23935 at 931.288 kb on - strand, within ABIE40_RS23935 at 931.288 kb on - strand, within ABIE40_RS23935 at 931.288 kb on - strand, within ABIE40_RS23935 at 931.364 kb on - strand, within ABIE40_RS23935 at 931.364 kb on - strand, within ABIE40_RS23935 at 931.364 kb on - strand, within ABIE40_RS23935 at 931.428 kb on + strand, within ABIE40_RS23935 at 931.429 kb on - strand, within ABIE40_RS23935 at 931.519 kb on - strand at 931.519 kb on - strand at 931.519 kb on - strand at 931.521 kb on + strand at 931.524 kb on + strand at 931.524 kb on + strand at 931.524 kb on + strand at 931.524 kb on + strand at 931.524 kb on + strand at 931.524 kb on + strand at 931.524 kb on + strand at 931.525 kb on - strand at 931.579 kb on + strand at 931.580 kb on - strand at 931.580 kb on - strand at 931.639 kb on + strand at 931.639 kb on + strand at 931.640 kb on - strand at 931.640 kb on - strand at 931.640 kb on - strand at 931.682 kb on + strand at 931.682 kb on + strand at 931.683 kb on - strand at 931.760 kb on + strand, within ABIE40_RS23940 at 931.761 kb on - strand, within ABIE40_RS23940 at 931.761 kb on - strand, within ABIE40_RS23940 at 931.761 kb on - strand, within ABIE40_RS23940 at 931.763 kb on - strand, within ABIE40_RS23940 at 931.763 kb on - strand, within ABIE40_RS23940 at 931.783 kb on + strand, within ABIE40_RS23940 at 931.783 kb on + strand, within ABIE40_RS23940 at 931.784 kb on - strand, within ABIE40_RS23940 at 931.784 kb on - strand, within ABIE40_RS23940 at 931.871 kb on + strand, within ABIE40_RS23940 at 931.871 kb on + strand, within ABIE40_RS23940 at 931.871 kb on + strand, within ABIE40_RS23940 at 931.872 kb on - strand, within ABIE40_RS23940 at 931.872 kb on - strand, within ABIE40_RS23940 at 932.268 kb on + strand at 932.321 kb on + strand at 932.321 kb on + strand at 932.322 kb on - strand at 932.322 kb on - strand at 932.435 kb on - strand, within ABIE40_RS23945 at 932.435 kb on - strand, within ABIE40_RS23945 at 932.435 kb on - strand, within ABIE40_RS23945 at 932.435 kb on - strand, within ABIE40_RS23945 at 932.497 kb on - strand, within ABIE40_RS23945 at 932.533 kb on - strand, within ABIE40_RS23945 at 932.560 kb on - strand, within ABIE40_RS23945 at 932.592 kb on + strand, within ABIE40_RS23945 at 932.593 kb on - strand, within ABIE40_RS23945 at 932.610 kb on + strand, within ABIE40_RS23945 at 932.610 kb on + strand, within ABIE40_RS23945 at 932.610 kb on + strand, within ABIE40_RS23945 at 932.610 kb on + strand, within ABIE40_RS23945 at 932.611 kb on - strand, within ABIE40_RS23945 at 932.611 kb on - strand, within ABIE40_RS23945 at 932.611 kb on - strand, within ABIE40_RS23945 at 932.611 kb on - strand, within ABIE40_RS23945 at 932.611 kb on - strand, within ABIE40_RS23945 at 932.706 kb on + strand, within ABIE40_RS23945 at 932.706 kb on + strand, within ABIE40_RS23945 at 932.706 kb on + strand, within ABIE40_RS23945 at 932.707 kb on - strand, within ABIE40_RS23945 at 932.707 kb on - strand, within ABIE40_RS23945 at 932.707 kb on - strand, within ABIE40_RS23945 at 932.707 kb on - strand, within ABIE40_RS23945 at 932.707 kb on - strand, within ABIE40_RS23945 at 932.707 kb on - strand, within ABIE40_RS23945 at 932.707 kb on - strand, within ABIE40_RS23945 at 932.712 kb on + strand, within ABIE40_RS23945 at 932.712 kb on + strand, within ABIE40_RS23945 at 932.712 kb on + strand, within ABIE40_RS23945 at 932.712 kb on + strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.713 kb on - strand, within ABIE40_RS23945 at 932.739 kb on + strand, within ABIE40_RS23945 at 932.835 kb on + strand, within ABIE40_RS23945 at 932.836 kb on - strand, within ABIE40_RS23945 at 932.983 kb on - strand, within ABIE40_RS23945 at 933.063 kb on + strand, within ABIE40_RS23945 at 933.063 kb on + strand, within ABIE40_RS23945 at 933.063 kb on + strand, within ABIE40_RS23945 at 933.133 kb on + strand, within ABIE40_RS23945 at 933.134 kb on - strand, within ABIE40_RS23945 at 933.249 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 930,999 + +2.2 930,999 + -2.2 931,068 + ABIE40_RS23935 0.11 -0.9 931,068 + ABIE40_RS23935 0.11 -0.1 931,068 + ABIE40_RS23935 0.11 -1.4 931,068 + ABIE40_RS23935 0.11 -0.1 931,068 + ABIE40_RS23935 0.11 +3.5 931,068 + ABIE40_RS23935 0.11 +0.2 931,069 - ABIE40_RS23935 0.11 -0.2 931,069 - ABIE40_RS23935 0.11 +1.4 931,069 - ABIE40_RS23935 0.11 +1.0 931,069 - ABIE40_RS23935 0.11 +0.3 931,069 - ABIE40_RS23935 0.11 +0.3 931,069 - ABIE40_RS23935 0.11 -0.5 931,069 - ABIE40_RS23935 0.11 -0.5 931,069 - ABIE40_RS23935 0.11 +1.1 931,069 - ABIE40_RS23935 0.11 +0.3 931,089 + ABIE40_RS23935 0.15 +0.6 931,228 + ABIE40_RS23935 0.39 -0.4 931,229 - ABIE40_RS23935 0.40 +0.6 931,230 + ABIE40_RS23935 0.40 +1.2 931,230 + ABIE40_RS23935 0.40 -0.8 931,230 + ABIE40_RS23935 0.40 -2.0 931,230 + ABIE40_RS23935 0.40 -0.8 931,231 - ABIE40_RS23935 0.40 -2.6 931,288 - ABIE40_RS23935 0.50 -0.6 931,288 - ABIE40_RS23935 0.50 -0.1 931,288 - ABIE40_RS23935 0.50 -0.4 931,364 - ABIE40_RS23935 0.64 +0.4 931,364 - ABIE40_RS23935 0.64 -2.5 931,364 - ABIE40_RS23935 0.64 -0.4 931,428 + ABIE40_RS23935 0.75 +0.9 931,429 - ABIE40_RS23935 0.75 -1.3 931,519 - -0.1 931,519 - +1.0 931,519 - +0.9 931,521 + -0.4 931,524 + -0.0 931,524 + +0.9 931,524 + -0.5 931,524 + +0.2 931,524 + -0.8 931,524 + +2.2 931,524 + -0.1 931,525 - +0.7 931,579 + -1.0 931,580 - -0.4 931,580 - +0.4 931,639 + +0.0 931,639 + -0.4 931,640 - -1.4 931,640 - -0.4 931,640 - -0.2 931,682 + +0.6 931,682 + +1.2 931,683 - +0.1 931,760 + ABIE40_RS23940 0.11 -2.9 931,761 - ABIE40_RS23940 0.12 +0.2 931,761 - ABIE40_RS23940 0.12 -2.4 931,761 - ABIE40_RS23940 0.12 -1.3 931,763 - ABIE40_RS23940 0.12 -1.3 931,763 - ABIE40_RS23940 0.12 -0.9 931,783 + ABIE40_RS23940 0.15 -1.9 931,783 + ABIE40_RS23940 0.15 -0.4 931,784 - ABIE40_RS23940 0.16 +2.2 931,784 - ABIE40_RS23940 0.16 -1.1 931,871 + ABIE40_RS23940 0.31 -1.3 931,871 + ABIE40_RS23940 0.31 -2.2 931,871 + ABIE40_RS23940 0.31 +0.7 931,872 - ABIE40_RS23940 0.31 -0.6 931,872 - ABIE40_RS23940 0.31 -0.6 932,268 + -1.0 932,321 + +0.5 932,321 + +0.0 932,322 - +0.4 932,322 - +0.5 932,435 - ABIE40_RS23945 0.11 +2.7 932,435 - ABIE40_RS23945 0.11 +0.9 932,435 - ABIE40_RS23945 0.11 -1.2 932,435 - ABIE40_RS23945 0.11 +0.2 932,497 - ABIE40_RS23945 0.18 -0.3 932,533 - ABIE40_RS23945 0.22 +0.1 932,560 - ABIE40_RS23945 0.25 -0.2 932,592 + ABIE40_RS23945 0.29 +0.2 932,593 - ABIE40_RS23945 0.29 -0.2 932,610 + ABIE40_RS23945 0.31 -2.0 932,610 + ABIE40_RS23945 0.31 -1.3 932,610 + ABIE40_RS23945 0.31 -1.8 932,610 + ABIE40_RS23945 0.31 -0.2 932,611 - ABIE40_RS23945 0.31 +3.2 932,611 - ABIE40_RS23945 0.31 -0.8 932,611 - ABIE40_RS23945 0.31 -1.1 932,611 - ABIE40_RS23945 0.31 -1.2 932,611 - ABIE40_RS23945 0.31 -0.4 932,706 + ABIE40_RS23945 0.41 -0.1 932,706 + ABIE40_RS23945 0.41 -1.6 932,706 + ABIE40_RS23945 0.41 +1.0 932,707 - ABIE40_RS23945 0.41 +1.3 932,707 - ABIE40_RS23945 0.41 +0.4 932,707 - ABIE40_RS23945 0.41 -0.4 932,707 - ABIE40_RS23945 0.41 +0.1 932,707 - ABIE40_RS23945 0.41 +1.0 932,707 - ABIE40_RS23945 0.41 +0.5 932,707 - ABIE40_RS23945 0.41 +0.0 932,712 + ABIE40_RS23945 0.42 +0.4 932,712 + ABIE40_RS23945 0.42 +0.2 932,712 + ABIE40_RS23945 0.42 +0.9 932,712 + ABIE40_RS23945 0.42 +0.3 932,713 - ABIE40_RS23945 0.42 +0.9 932,713 - ABIE40_RS23945 0.42 +0.4 932,713 - ABIE40_RS23945 0.42 +0.1 932,713 - ABIE40_RS23945 0.42 -0.5 932,713 - ABIE40_RS23945 0.42 -0.7 932,713 - ABIE40_RS23945 0.42 -0.1 932,713 - ABIE40_RS23945 0.42 +0.1 932,713 - ABIE40_RS23945 0.42 -0.7 932,739 + ABIE40_RS23945 0.45 +0.0 932,835 + ABIE40_RS23945 0.56 +0.7 932,836 - ABIE40_RS23945 0.56 -0.7 932,983 - ABIE40_RS23945 0.72 -2.2 933,063 + ABIE40_RS23945 0.81 +1.2 933,063 + ABIE40_RS23945 0.81 -0.5 933,063 + ABIE40_RS23945 0.81 -1.5 933,133 + ABIE40_RS23945 0.89 +0.6 933,134 - ABIE40_RS23945 0.89 -0.4 933,249 + -2.2
Or see this region's nucleotide sequence