Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22265 and ABIE40_RS22270 are separated by 210 nucleotides ABIE40_RS22270 and ABIE40_RS22275 are separated by 91 nucleotides ABIE40_RS22275 and ABIE40_RS22280 are separated by 74 nucleotides ABIE40_RS22280 and ABIE40_RS22285 overlap by 4 nucleotides
ABIE40_RS22265: ABIE40_RS22265 - sulfite exporter TauE/SafE family protein, at 585,935 to 586,666
_RS22265
ABIE40_RS22270: ABIE40_RS22270 - hypothetical protein, at 586,877 to 587,023
_RS22270
ABIE40_RS22275: ABIE40_RS22275 - hypothetical protein, at 587,115 to 587,429
_RS22275
ABIE40_RS22280: ABIE40_RS22280 - hypothetical protein, at 587,504 to 588,313
_RS22280
ABIE40_RS22285: ABIE40_RS22285 - hypothetical protein, at 588,310 to 589,671
_RS22285
Position (kb) 587
588 Strain fitness (log2 ratio) -2
-1
0
1
2 at 586.283 kb on + strand, within ABIE40_RS22265 at 586.283 kb on + strand, within ABIE40_RS22265 at 586.283 kb on + strand, within ABIE40_RS22265 at 586.283 kb on + strand, within ABIE40_RS22265 at 586.283 kb on + strand, within ABIE40_RS22265 at 586.284 kb on - strand, within ABIE40_RS22265 at 586.284 kb on - strand, within ABIE40_RS22265 at 586.284 kb on - strand, within ABIE40_RS22265 at 586.284 kb on - strand, within ABIE40_RS22265 at 586.284 kb on - strand, within ABIE40_RS22265 at 586.284 kb on - strand, within ABIE40_RS22265 at 586.317 kb on + strand, within ABIE40_RS22265 at 586.317 kb on + strand, within ABIE40_RS22265 at 586.317 kb on + strand, within ABIE40_RS22265 at 586.317 kb on + strand, within ABIE40_RS22265 at 586.317 kb on + strand, within ABIE40_RS22265 at 586.318 kb on - strand, within ABIE40_RS22265 at 586.318 kb on - strand, within ABIE40_RS22265 at 586.397 kb on - strand, within ABIE40_RS22265 at 586.397 kb on - strand, within ABIE40_RS22265 at 586.397 kb on - strand, within ABIE40_RS22265 at 586.398 kb on + strand, within ABIE40_RS22265 at 586.398 kb on + strand, within ABIE40_RS22265 at 586.399 kb on - strand, within ABIE40_RS22265 at 586.473 kb on + strand, within ABIE40_RS22265 at 586.473 kb on + strand, within ABIE40_RS22265 at 586.473 kb on + strand, within ABIE40_RS22265 at 586.473 kb on + strand, within ABIE40_RS22265 at 586.474 kb on - strand, within ABIE40_RS22265 at 586.474 kb on - strand, within ABIE40_RS22265 at 586.789 kb on + strand at 586.790 kb on - strand at 586.883 kb on + strand at 586.883 kb on + strand at 586.883 kb on + strand at 586.884 kb on - strand at 586.884 kb on - strand at 586.908 kb on + strand, within ABIE40_RS22270 at 587.031 kb on + strand at 587.031 kb on + strand at 587.031 kb on + strand at 587.031 kb on + strand at 587.199 kb on - strand, within ABIE40_RS22275 at 587.241 kb on + strand, within ABIE40_RS22275 at 587.241 kb on + strand, within ABIE40_RS22275 at 587.242 kb on - strand, within ABIE40_RS22275 at 587.298 kb on + strand, within ABIE40_RS22275 at 587.325 kb on + strand, within ABIE40_RS22275 at 587.389 kb on - strand, within ABIE40_RS22275 at 587.392 kb on - strand, within ABIE40_RS22275 at 587.587 kb on - strand, within ABIE40_RS22280 at 587.589 kb on + strand, within ABIE40_RS22280 at 587.589 kb on + strand, within ABIE40_RS22280 at 587.590 kb on - strand, within ABIE40_RS22280 at 587.935 kb on - strand, within ABIE40_RS22280 at 587.935 kb on - strand, within ABIE40_RS22280 at 587.935 kb on - strand, within ABIE40_RS22280 at 587.982 kb on + strand, within ABIE40_RS22280
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 586,283 + ABIE40_RS22265 0.48 -0.1 586,283 + ABIE40_RS22265 0.48 +0.2 586,283 + ABIE40_RS22265 0.48 -0.8 586,283 + ABIE40_RS22265 0.48 +1.3 586,283 + ABIE40_RS22265 0.48 -1.1 586,284 - ABIE40_RS22265 0.48 -0.5 586,284 - ABIE40_RS22265 0.48 -0.8 586,284 - ABIE40_RS22265 0.48 -0.3 586,284 - ABIE40_RS22265 0.48 +0.6 586,284 - ABIE40_RS22265 0.48 -0.2 586,284 - ABIE40_RS22265 0.48 +0.5 586,317 + ABIE40_RS22265 0.52 +0.3 586,317 + ABIE40_RS22265 0.52 +0.6 586,317 + ABIE40_RS22265 0.52 -1.7 586,317 + ABIE40_RS22265 0.52 +0.0 586,317 + ABIE40_RS22265 0.52 -1.9 586,318 - ABIE40_RS22265 0.52 -0.3 586,318 - ABIE40_RS22265 0.52 -0.0 586,397 - ABIE40_RS22265 0.63 -0.2 586,397 - ABIE40_RS22265 0.63 +0.2 586,397 - ABIE40_RS22265 0.63 +0.8 586,398 + ABIE40_RS22265 0.63 -1.3 586,398 + ABIE40_RS22265 0.63 -0.4 586,399 - ABIE40_RS22265 0.63 -2.0 586,473 + ABIE40_RS22265 0.73 +1.8 586,473 + ABIE40_RS22265 0.73 +0.4 586,473 + ABIE40_RS22265 0.73 +0.4 586,473 + ABIE40_RS22265 0.73 -0.5 586,474 - ABIE40_RS22265 0.74 +0.2 586,474 - ABIE40_RS22265 0.74 -1.1 586,789 + -0.4 586,790 - -0.5 586,883 + -0.5 586,883 + +0.3 586,883 + -0.2 586,884 - -0.3 586,884 - +0.2 586,908 + ABIE40_RS22270 0.21 +0.5 587,031 + -0.2 587,031 + +2.5 587,031 + +0.2 587,031 + -0.1 587,199 - ABIE40_RS22275 0.27 -0.8 587,241 + ABIE40_RS22275 0.40 +1.0 587,241 + ABIE40_RS22275 0.40 -0.2 587,242 - ABIE40_RS22275 0.40 +1.2 587,298 + ABIE40_RS22275 0.58 +0.9 587,325 + ABIE40_RS22275 0.67 +0.8 587,389 - ABIE40_RS22275 0.87 -0.0 587,392 - ABIE40_RS22275 0.88 -0.3 587,587 - ABIE40_RS22280 0.10 +0.7 587,589 + ABIE40_RS22280 0.10 -0.1 587,589 + ABIE40_RS22280 0.10 -1.1 587,590 - ABIE40_RS22280 0.11 -1.3 587,935 - ABIE40_RS22280 0.53 +0.3 587,935 - ABIE40_RS22280 0.53 -1.7 587,935 - ABIE40_RS22280 0.53 -0.0 587,982 + ABIE40_RS22280 0.59 -0.3
Or see this region's nucleotide sequence