Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20865 and ABIE40_RS20870 are separated by 3 nucleotides ABIE40_RS20870 and ABIE40_RS20875 overlap by 1 nucleotides ABIE40_RS20875 and ABIE40_RS20880 are separated by 67 nucleotides
ABIE40_RS20865: ABIE40_RS20865 - cytochrome o ubiquinol oxidase subunit I, at 286,521 to 288,497
_RS20865
ABIE40_RS20870: ABIE40_RS20870 - cytochrome o ubiquinol oxidase subunit III, at 288,501 to 289,127
_RS20870
ABIE40_RS20875: ABIE40_RS20875 - cytochrome o ubiquinol oxidase subunit IV, at 289,127 to 289,486
_RS20875
ABIE40_RS20880: ABIE40_RS20880 - 5-aminolevulinate synthase, at 289,554 to 290,777
_RS20880
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.632 kb on - strand, within ABIE40_RS20865 at 287.753 kb on + strand, within ABIE40_RS20865 at 287.753 kb on + strand, within ABIE40_RS20865 at 287.753 kb on + strand, within ABIE40_RS20865 at 287.754 kb on - strand, within ABIE40_RS20865 at 287.754 kb on - strand, within ABIE40_RS20865 at 287.754 kb on - strand, within ABIE40_RS20865 at 287.934 kb on + strand, within ABIE40_RS20865 at 287.934 kb on + strand, within ABIE40_RS20865 at 287.934 kb on + strand, within ABIE40_RS20865 at 287.934 kb on + strand, within ABIE40_RS20865 at 287.934 kb on + strand, within ABIE40_RS20865 at 287.934 kb on + strand, within ABIE40_RS20865 at 287.934 kb on + strand, within ABIE40_RS20865 at 287.935 kb on - strand, within ABIE40_RS20865 at 287.935 kb on - strand, within ABIE40_RS20865 at 287.935 kb on - strand, within ABIE40_RS20865 at 287.935 kb on - strand, within ABIE40_RS20865 at 287.954 kb on + strand, within ABIE40_RS20865 at 287.954 kb on + strand, within ABIE40_RS20865 at 287.954 kb on + strand, within ABIE40_RS20865 at 287.955 kb on - strand, within ABIE40_RS20865 at 287.976 kb on + strand, within ABIE40_RS20865 at 287.976 kb on + strand, within ABIE40_RS20865 at 287.976 kb on + strand, within ABIE40_RS20865 at 287.977 kb on - strand, within ABIE40_RS20865 at 288.000 kb on + strand, within ABIE40_RS20865 at 288.000 kb on + strand, within ABIE40_RS20865 at 288.000 kb on + strand, within ABIE40_RS20865 at 288.000 kb on + strand, within ABIE40_RS20865 at 288.000 kb on + strand, within ABIE40_RS20865 at 288.001 kb on - strand, within ABIE40_RS20865 at 288.069 kb on + strand, within ABIE40_RS20865 at 288.069 kb on + strand, within ABIE40_RS20865 at 288.069 kb on + strand, within ABIE40_RS20865 at 288.069 kb on + strand, within ABIE40_RS20865 at 288.069 kb on + strand, within ABIE40_RS20865 at 288.069 kb on + strand, within ABIE40_RS20865 at 288.070 kb on - strand, within ABIE40_RS20865 at 288.070 kb on - strand, within ABIE40_RS20865 at 288.070 kb on - strand, within ABIE40_RS20865 at 288.070 kb on - strand, within ABIE40_RS20865 at 288.070 kb on - strand, within ABIE40_RS20865 at 288.070 kb on - strand, within ABIE40_RS20865 at 288.169 kb on - strand, within ABIE40_RS20865 at 288.169 kb on - strand, within ABIE40_RS20865 at 288.258 kb on + strand, within ABIE40_RS20865 at 288.258 kb on + strand, within ABIE40_RS20865 at 288.258 kb on + strand, within ABIE40_RS20865 at 288.259 kb on - strand, within ABIE40_RS20865 at 288.259 kb on - strand, within ABIE40_RS20865 at 288.323 kb on - strand at 288.323 kb on - strand at 288.323 kb on - strand at 288.389 kb on - strand at 288.389 kb on - strand at 288.408 kb on + strand at 288.409 kb on - strand at 288.409 kb on - strand at 288.426 kb on + strand at 288.426 kb on + strand at 288.427 kb on - strand at 288.429 kb on + strand at 288.429 kb on + strand at 288.429 kb on + strand at 288.429 kb on + strand at 288.430 kb on - strand at 288.430 kb on - strand at 288.430 kb on - strand at 288.430 kb on - strand at 288.430 kb on - strand at 288.430 kb on - strand at 288.515 kb on + strand at 288.515 kb on + strand at 288.515 kb on + strand at 288.606 kb on + strand, within ABIE40_RS20870 at 288.607 kb on - strand, within ABIE40_RS20870 at 288.607 kb on - strand, within ABIE40_RS20870 at 288.607 kb on - strand, within ABIE40_RS20870 at 288.607 kb on - strand, within ABIE40_RS20870 at 288.714 kb on + strand, within ABIE40_RS20870 at 288.715 kb on - strand, within ABIE40_RS20870 at 288.715 kb on - strand, within ABIE40_RS20870 at 288.927 kb on + strand, within ABIE40_RS20870 at 288.927 kb on + strand, within ABIE40_RS20870 at 288.928 kb on - strand, within ABIE40_RS20870 at 288.928 kb on - strand, within ABIE40_RS20870 at 288.928 kb on - strand, within ABIE40_RS20870 at 288.928 kb on - strand, within ABIE40_RS20870 at 289.107 kb on + strand at 289.175 kb on + strand, within ABIE40_RS20875 at 289.175 kb on + strand, within ABIE40_RS20875 at 289.175 kb on + strand, within ABIE40_RS20875 at 289.175 kb on + strand, within ABIE40_RS20875 at 289.175 kb on + strand, within ABIE40_RS20875 at 289.175 kb on + strand, within ABIE40_RS20875 at 289.176 kb on - strand, within ABIE40_RS20875 at 289.176 kb on - strand, within ABIE40_RS20875 at 289.176 kb on - strand, within ABIE40_RS20875 at 289.278 kb on + strand, within ABIE40_RS20875 at 289.278 kb on + strand, within ABIE40_RS20875 at 289.278 kb on + strand, within ABIE40_RS20875 at 289.278 kb on + strand, within ABIE40_RS20875 at 289.278 kb on + strand, within ABIE40_RS20875 at 289.279 kb on - strand, within ABIE40_RS20875 at 289.279 kb on - strand, within ABIE40_RS20875 at 289.560 kb on + strand at 289.560 kb on + strand at 289.560 kb on + strand at 289.560 kb on + strand at 289.560 kb on + strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.561 kb on - strand at 289.569 kb on - strand at 289.719 kb on + strand, within ABIE40_RS20880 at 289.719 kb on + strand, within ABIE40_RS20880 at 289.719 kb on + strand, within ABIE40_RS20880 at 289.720 kb on - strand, within ABIE40_RS20880 at 289.720 kb on - strand, within ABIE40_RS20880 at 289.720 kb on - strand, within ABIE40_RS20880 at 289.939 kb on + strand, within ABIE40_RS20880 at 289.939 kb on + strand, within ABIE40_RS20880 at 289.939 kb on + strand, within ABIE40_RS20880 at 289.939 kb on + strand, within ABIE40_RS20880 at 289.940 kb on - strand, within ABIE40_RS20880 at 289.940 kb on - strand, within ABIE40_RS20880
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 287,632 - ABIE40_RS20865 0.56 -0.3 287,753 + ABIE40_RS20865 0.62 -0.7 287,753 + ABIE40_RS20865 0.62 -0.5 287,753 + ABIE40_RS20865 0.62 -0.2 287,754 - ABIE40_RS20865 0.62 +2.1 287,754 - ABIE40_RS20865 0.62 -0.9 287,754 - ABIE40_RS20865 0.62 +0.5 287,934 + ABIE40_RS20865 0.71 +0.6 287,934 + ABIE40_RS20865 0.71 -1.3 287,934 + ABIE40_RS20865 0.71 +0.1 287,934 + ABIE40_RS20865 0.71 -0.7 287,934 + ABIE40_RS20865 0.71 -1.2 287,934 + ABIE40_RS20865 0.71 +0.7 287,934 + ABIE40_RS20865 0.71 -1.2 287,935 - ABIE40_RS20865 0.72 -0.9 287,935 - ABIE40_RS20865 0.72 -1.9 287,935 - ABIE40_RS20865 0.72 +0.1 287,935 - ABIE40_RS20865 0.72 -0.5 287,954 + ABIE40_RS20865 0.72 +0.0 287,954 + ABIE40_RS20865 0.72 -0.4 287,954 + ABIE40_RS20865 0.72 -0.8 287,955 - ABIE40_RS20865 0.73 -1.0 287,976 + ABIE40_RS20865 0.74 +1.1 287,976 + ABIE40_RS20865 0.74 -0.1 287,976 + ABIE40_RS20865 0.74 -0.6 287,977 - ABIE40_RS20865 0.74 +2.1 288,000 + ABIE40_RS20865 0.75 -0.0 288,000 + ABIE40_RS20865 0.75 -1.6 288,000 + ABIE40_RS20865 0.75 -0.8 288,000 + ABIE40_RS20865 0.75 +0.2 288,000 + ABIE40_RS20865 0.75 +0.4 288,001 - ABIE40_RS20865 0.75 -1.6 288,069 + ABIE40_RS20865 0.78 +0.5 288,069 + ABIE40_RS20865 0.78 -1.1 288,069 + ABIE40_RS20865 0.78 -2.1 288,069 + ABIE40_RS20865 0.78 +2.1 288,069 + ABIE40_RS20865 0.78 +0.4 288,069 + ABIE40_RS20865 0.78 -1.7 288,070 - ABIE40_RS20865 0.78 +0.5 288,070 - ABIE40_RS20865 0.78 +1.5 288,070 - ABIE40_RS20865 0.78 -1.0 288,070 - ABIE40_RS20865 0.78 +1.6 288,070 - ABIE40_RS20865 0.78 +0.1 288,070 - ABIE40_RS20865 0.78 +0.6 288,169 - ABIE40_RS20865 0.83 -1.0 288,169 - ABIE40_RS20865 0.83 -0.3 288,258 + ABIE40_RS20865 0.88 +0.7 288,258 + ABIE40_RS20865 0.88 -0.1 288,258 + ABIE40_RS20865 0.88 -0.9 288,259 - ABIE40_RS20865 0.88 -1.0 288,259 - ABIE40_RS20865 0.88 +0.1 288,323 - +1.1 288,323 - -1.2 288,323 - -2.4 288,389 - -0.3 288,389 - -1.5 288,408 + +0.3 288,409 - +2.1 288,409 - -0.4 288,426 + -1.1 288,426 + -0.7 288,427 - +0.2 288,429 + +0.5 288,429 + -0.7 288,429 + +0.7 288,429 + +0.2 288,430 - -1.3 288,430 - +0.7 288,430 - +0.0 288,430 - -0.3 288,430 - +0.1 288,430 - -1.3 288,515 + +0.1 288,515 + +1.7 288,515 + +0.6 288,606 + ABIE40_RS20870 0.17 +0.2 288,607 - ABIE40_RS20870 0.17 -2.6 288,607 - ABIE40_RS20870 0.17 +2.5 288,607 - ABIE40_RS20870 0.17 -0.3 288,607 - ABIE40_RS20870 0.17 -0.6 288,714 + ABIE40_RS20870 0.34 +0.2 288,715 - ABIE40_RS20870 0.34 +0.7 288,715 - ABIE40_RS20870 0.34 +0.5 288,927 + ABIE40_RS20870 0.68 -0.3 288,927 + ABIE40_RS20870 0.68 -1.8 288,928 - ABIE40_RS20870 0.68 +1.1 288,928 - ABIE40_RS20870 0.68 +0.1 288,928 - ABIE40_RS20870 0.68 +0.6 288,928 - ABIE40_RS20870 0.68 +0.5 289,107 + -0.7 289,175 + ABIE40_RS20875 0.13 -0.8 289,175 + ABIE40_RS20875 0.13 +0.6 289,175 + ABIE40_RS20875 0.13 -1.1 289,175 + ABIE40_RS20875 0.13 -0.4 289,175 + ABIE40_RS20875 0.13 +0.0 289,175 + ABIE40_RS20875 0.13 -0.8 289,176 - ABIE40_RS20875 0.14 -0.2 289,176 - ABIE40_RS20875 0.14 +1.5 289,176 - ABIE40_RS20875 0.14 -1.5 289,278 + ABIE40_RS20875 0.42 +0.1 289,278 + ABIE40_RS20875 0.42 -0.8 289,278 + ABIE40_RS20875 0.42 +0.2 289,278 + ABIE40_RS20875 0.42 -0.3 289,278 + ABIE40_RS20875 0.42 -0.0 289,279 - ABIE40_RS20875 0.42 +0.1 289,279 - ABIE40_RS20875 0.42 -0.5 289,560 + -0.8 289,560 + +0.5 289,560 + -0.3 289,560 + -0.0 289,560 + +0.1 289,561 - +1.1 289,561 - -0.0 289,561 - -0.1 289,561 - +0.7 289,561 - -0.3 289,561 - -1.5 289,561 - +0.9 289,561 - +0.3 289,561 - +0.1 289,569 - +0.3 289,719 + ABIE40_RS20880 0.13 -0.3 289,719 + ABIE40_RS20880 0.13 -0.3 289,719 + ABIE40_RS20880 0.13 -0.9 289,720 - ABIE40_RS20880 0.14 +0.2 289,720 - ABIE40_RS20880 0.14 +0.4 289,720 - ABIE40_RS20880 0.14 -1.3 289,939 + ABIE40_RS20880 0.31 +1.5 289,939 + ABIE40_RS20880 0.31 +1.1 289,939 + ABIE40_RS20880 0.31 +1.1 289,939 + ABIE40_RS20880 0.31 -2.2 289,940 - ABIE40_RS20880 0.32 -0.3 289,940 - ABIE40_RS20880 0.32 +0.0
Or see this region's nucleotide sequence