Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19925

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19920 and ABIE40_RS19925 are separated by 41 nucleotidesABIE40_RS19925 and ABIE40_RS19930 are separated by 159 nucleotides ABIE40_RS19920: ABIE40_RS19920 - hypothetical protein, at 81,819 to 83,117 _RS19920 ABIE40_RS19925: ABIE40_RS19925 - LacI family DNA-binding transcriptional regulator, at 83,159 to 84,211 _RS19925 ABIE40_RS19930: ABIE40_RS19930 - ABC transporter substrate-binding protein, at 84,371 to 85,639 _RS19930 Position (kb) 83 84 85Strain fitness (log2 ratio) -2 -1 0 1 2 3at 82.249 kb on + strand, within ABIE40_RS19920at 82.250 kb on + strand, within ABIE40_RS19920at 82.250 kb on + strand, within ABIE40_RS19920at 82.250 kb on + strand, within ABIE40_RS19920at 82.250 kb on + strand, within ABIE40_RS19920at 82.250 kb on + strand, within ABIE40_RS19920at 82.251 kb on - strand, within ABIE40_RS19920at 82.251 kb on - strand, within ABIE40_RS19920at 82.256 kb on - strand, within ABIE40_RS19920at 82.261 kb on + strand, within ABIE40_RS19920at 82.261 kb on + strand, within ABIE40_RS19920at 82.261 kb on + strand, within ABIE40_RS19920at 82.261 kb on + strand, within ABIE40_RS19920at 82.262 kb on - strand, within ABIE40_RS19920at 82.262 kb on - strand, within ABIE40_RS19920at 82.262 kb on - strand, within ABIE40_RS19920at 82.297 kb on + strand, within ABIE40_RS19920at 82.306 kb on + strand, within ABIE40_RS19920at 82.306 kb on + strand, within ABIE40_RS19920at 82.306 kb on + strand, within ABIE40_RS19920at 82.306 kb on + strand, within ABIE40_RS19920at 82.307 kb on - strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.333 kb on + strand, within ABIE40_RS19920at 82.334 kb on - strand, within ABIE40_RS19920at 82.334 kb on - strand, within ABIE40_RS19920at 82.334 kb on - strand, within ABIE40_RS19920at 82.416 kb on + strand, within ABIE40_RS19920at 82.416 kb on + strand, within ABIE40_RS19920at 82.416 kb on + strand, within ABIE40_RS19920at 82.417 kb on - strand, within ABIE40_RS19920at 82.486 kb on + strand, within ABIE40_RS19920at 82.486 kb on + strand, within ABIE40_RS19920at 82.486 kb on + strand, within ABIE40_RS19920at 82.486 kb on + strand, within ABIE40_RS19920at 82.486 kb on + strand, within ABIE40_RS19920at 82.487 kb on - strand, within ABIE40_RS19920at 82.487 kb on - strand, within ABIE40_RS19920at 82.487 kb on - strand, within ABIE40_RS19920at 82.487 kb on - strand, within ABIE40_RS19920at 82.488 kb on - strand, within ABIE40_RS19920at 82.494 kb on + strand, within ABIE40_RS19920at 82.494 kb on + strand, within ABIE40_RS19920at 82.494 kb on + strand, within ABIE40_RS19920at 82.495 kb on - strand, within ABIE40_RS19920at 82.495 kb on - strand, within ABIE40_RS19920at 82.495 kb on - strand, within ABIE40_RS19920at 82.495 kb on - strand, within ABIE40_RS19920at 82.495 kb on - strand, within ABIE40_RS19920at 82.495 kb on - strand, within ABIE40_RS19920at 82.644 kb on - strand, within ABIE40_RS19920at 82.644 kb on - strand, within ABIE40_RS19920at 82.729 kb on + strand, within ABIE40_RS19920at 82.729 kb on + strand, within ABIE40_RS19920at 82.729 kb on + strand, within ABIE40_RS19920at 82.729 kb on + strand, within ABIE40_RS19920at 82.730 kb on - strand, within ABIE40_RS19920at 82.730 kb on - strand, within ABIE40_RS19920at 82.732 kb on + strand, within ABIE40_RS19920at 82.733 kb on - strand, within ABIE40_RS19920at 82.866 kb on + strand, within ABIE40_RS19920at 82.866 kb on + strand, within ABIE40_RS19920at 82.867 kb on - strand, within ABIE40_RS19920at 82.980 kb on + strand, within ABIE40_RS19920at 82.980 kb on + strand, within ABIE40_RS19920at 82.980 kb on + strand, within ABIE40_RS19920at 82.981 kb on - strand, within ABIE40_RS19920at 83.126 kb on + strandat 83.126 kb on + strandat 83.126 kb on + strandat 83.126 kb on + strandat 83.127 kb on - strandat 83.127 kb on - strandat 83.129 kb on + strandat 83.185 kb on - strandat 83.674 kb on + strand, within ABIE40_RS19925at 83.764 kb on + strand, within ABIE40_RS19925at 83.998 kb on - strand, within ABIE40_RS19925at 83.998 kb on - strand, within ABIE40_RS19925at 84.070 kb on - strand, within ABIE40_RS19925at 84.070 kb on - strand, within ABIE40_RS19925at 84.234 kb on + strandat 84.234 kb on + strandat 84.234 kb on + strandat 84.234 kb on + strandat 84.235 kb on - strandat 84.235 kb on - strandat 84.572 kb on + strand, within ABIE40_RS19930at 84.700 kb on + strand, within ABIE40_RS19930at 84.700 kb on + strand, within ABIE40_RS19930at 84.700 kb on + strand, within ABIE40_RS19930at 84.700 kb on + strand, within ABIE40_RS19930at 84.700 kb on + strand, within ABIE40_RS19930at 84.700 kb on + strand, within ABIE40_RS19930at 84.701 kb on - strand, within ABIE40_RS19930at 84.701 kb on - strand, within ABIE40_RS19930at 84.701 kb on - strand, within ABIE40_RS19930at 84.701 kb on - strand, within ABIE40_RS19930at 85.049 kb on + strand, within ABIE40_RS19930at 85.049 kb on + strand, within ABIE40_RS19930at 85.166 kb on + strand, within ABIE40_RS19930at 85.167 kb on - strand, within ABIE40_RS19930

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
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82,249 + ABIE40_RS19920 0.33 +0.5
82,250 + ABIE40_RS19920 0.33 +0.1
82,250 + ABIE40_RS19920 0.33 +2.1
82,250 + ABIE40_RS19920 0.33 +0.3
82,250 + ABIE40_RS19920 0.33 -0.5
82,250 + ABIE40_RS19920 0.33 -0.5
82,251 - ABIE40_RS19920 0.33 -1.7
82,251 - ABIE40_RS19920 0.33 -0.1
82,256 - ABIE40_RS19920 0.34 +0.4
82,261 + ABIE40_RS19920 0.34 -2.1
82,261 + ABIE40_RS19920 0.34 -0.5
82,261 + ABIE40_RS19920 0.34 +1.7
82,261 + ABIE40_RS19920 0.34 -1.2
82,262 - ABIE40_RS19920 0.34 -0.7
82,262 - ABIE40_RS19920 0.34 +0.5
82,262 - ABIE40_RS19920 0.34 -0.1
82,297 + ABIE40_RS19920 0.37 -0.6
82,306 + ABIE40_RS19920 0.37 -0.2
82,306 + ABIE40_RS19920 0.37 +0.2
82,306 + ABIE40_RS19920 0.37 -0.2
82,306 + ABIE40_RS19920 0.37 -0.3
82,307 - ABIE40_RS19920 0.38 +0.9
82,333 + ABIE40_RS19920 0.40 +0.8
82,333 + ABIE40_RS19920 0.40 -0.3
82,333 + ABIE40_RS19920 0.40 -0.1
82,333 + ABIE40_RS19920 0.40 -0.3
82,333 + ABIE40_RS19920 0.40 -1.0
82,333 + ABIE40_RS19920 0.40 -0.2
82,333 + ABIE40_RS19920 0.40 -0.5
82,333 + ABIE40_RS19920 0.40 -2.6
82,333 + ABIE40_RS19920 0.40 -0.2
82,333 + ABIE40_RS19920 0.40 +1.3
82,334 - ABIE40_RS19920 0.40 -0.1
82,334 - ABIE40_RS19920 0.40 -1.7
82,334 - ABIE40_RS19920 0.40 +0.8
82,416 + ABIE40_RS19920 0.46 +0.7
82,416 + ABIE40_RS19920 0.46 +0.3
82,416 + ABIE40_RS19920 0.46 +0.3
82,417 - ABIE40_RS19920 0.46 -0.9
82,486 + ABIE40_RS19920 0.51 -0.4
82,486 + ABIE40_RS19920 0.51 -0.7
82,486 + ABIE40_RS19920 0.51 +0.9
82,486 + ABIE40_RS19920 0.51 -0.7
82,486 + ABIE40_RS19920 0.51 +2.5
82,487 - ABIE40_RS19920 0.51 -0.7
82,487 - ABIE40_RS19920 0.51 -0.2
82,487 - ABIE40_RS19920 0.51 +2.1
82,487 - ABIE40_RS19920 0.51 -0.7
82,488 - ABIE40_RS19920 0.52 -0.8
82,494 + ABIE40_RS19920 0.52 -0.2
82,494 + ABIE40_RS19920 0.52 -0.7
82,494 + ABIE40_RS19920 0.52 -0.8
82,495 - ABIE40_RS19920 0.52 -1.5
82,495 - ABIE40_RS19920 0.52 -1.1
82,495 - ABIE40_RS19920 0.52 +0.5
82,495 - ABIE40_RS19920 0.52 -2.5
82,495 - ABIE40_RS19920 0.52 -1.3
82,495 - ABIE40_RS19920 0.52 -1.1
82,644 - ABIE40_RS19920 0.64 +0.7
82,644 - ABIE40_RS19920 0.64 +0.9
82,729 + ABIE40_RS19920 0.70 -1.6
82,729 + ABIE40_RS19920 0.70 +0.4
82,729 + ABIE40_RS19920 0.70 -0.9
82,729 + ABIE40_RS19920 0.70 +3.1
82,730 - ABIE40_RS19920 0.70 -0.6
82,730 - ABIE40_RS19920 0.70 -1.0
82,732 + ABIE40_RS19920 0.70 +0.5
82,733 - ABIE40_RS19920 0.70 +0.2
82,866 + ABIE40_RS19920 0.81 -1.1
82,866 + ABIE40_RS19920 0.81 -0.9
82,867 - ABIE40_RS19920 0.81 -0.3
82,980 + ABIE40_RS19920 0.89 +0.3
82,980 + ABIE40_RS19920 0.89 -1.1
82,980 + ABIE40_RS19920 0.89 -1.0
82,981 - ABIE40_RS19920 0.89 +2.1
83,126 + +1.0
83,126 + -2.4
83,126 + -0.6
83,126 + +2.1
83,127 - +0.9
83,127 - -0.8
83,129 + -2.3
83,185 - +2.5
83,674 + ABIE40_RS19925 0.49 -0.2
83,764 + ABIE40_RS19925 0.57 -1.6
83,998 - ABIE40_RS19925 0.80 +1.9
83,998 - ABIE40_RS19925 0.80 +0.8
84,070 - ABIE40_RS19925 0.87 -0.2
84,070 - ABIE40_RS19925 0.87 +1.3
84,234 + -0.9
84,234 + +0.7
84,234 + -1.2
84,234 + +0.5
84,235 - -1.4
84,235 - -0.1
84,572 + ABIE40_RS19930 0.16 +0.8
84,700 + ABIE40_RS19930 0.26 +0.6
84,700 + ABIE40_RS19930 0.26 -0.8
84,700 + ABIE40_RS19930 0.26 -0.2
84,700 + ABIE40_RS19930 0.26 -1.0
84,700 + ABIE40_RS19930 0.26 -0.6
84,700 + ABIE40_RS19930 0.26 -0.7
84,701 - ABIE40_RS19930 0.26 -0.4
84,701 - ABIE40_RS19930 0.26 -0.2
84,701 - ABIE40_RS19930 0.26 -1.4
84,701 - ABIE40_RS19930 0.26 -1.0
85,049 + ABIE40_RS19930 0.53 -0.7
85,049 + ABIE40_RS19930 0.53 -0.5
85,166 + ABIE40_RS19930 0.63 -0.9
85,167 - ABIE40_RS19930 0.63 +0.3

Or see this region's nucleotide sequence