Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19700 and ABIE40_RS19705 overlap by 4 nucleotides ABIE40_RS19705 and ABIE40_RS19710 overlap by 1 nucleotides
ABIE40_RS19700: ABIE40_RS19700 - MBL fold metallo-hydrolase, at 35,389 to 36,219
_RS19700
ABIE40_RS19705: ABIE40_RS19705 - polysaccharide deacetylase family protein, at 36,216 to 36,968
_RS19705
ABIE40_RS19710: ABIE40_RS19710 - glycosyltransferase family 4 protein, at 36,968 to 38,053
_RS19710
Position (kb) 36
37 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 35.217 kb on + strand at 35.262 kb on + strand at 35.315 kb on - strand at 35.315 kb on - strand at 35.351 kb on + strand at 35.467 kb on + strand at 35.467 kb on + strand at 35.650 kb on + strand, within ABIE40_RS19700 at 35.650 kb on + strand, within ABIE40_RS19700 at 35.764 kb on - strand, within ABIE40_RS19700 at 35.845 kb on + strand, within ABIE40_RS19700 at 35.846 kb on - strand, within ABIE40_RS19700 at 35.846 kb on - strand, within ABIE40_RS19700 at 35.846 kb on - strand, within ABIE40_RS19700 at 35.944 kb on + strand, within ABIE40_RS19700 at 35.992 kb on + strand, within ABIE40_RS19700 at 35.992 kb on + strand, within ABIE40_RS19700 at 36.005 kb on - strand, within ABIE40_RS19700 at 36.217 kb on + strand at 36.261 kb on - strand at 36.467 kb on + strand, within ABIE40_RS19705 at 36.468 kb on - strand, within ABIE40_RS19705 at 36.499 kb on + strand, within ABIE40_RS19705 at 36.499 kb on + strand, within ABIE40_RS19705 at 36.499 kb on + strand, within ABIE40_RS19705 at 36.500 kb on - strand, within ABIE40_RS19705 at 36.500 kb on - strand, within ABIE40_RS19705 at 36.500 kb on - strand, within ABIE40_RS19705 at 36.500 kb on - strand, within ABIE40_RS19705 at 36.631 kb on + strand, within ABIE40_RS19705 at 36.631 kb on + strand, within ABIE40_RS19705 at 36.632 kb on - strand, within ABIE40_RS19705 at 36.632 kb on - strand, within ABIE40_RS19705 at 36.632 kb on - strand, within ABIE40_RS19705 at 36.633 kb on + strand, within ABIE40_RS19705 at 36.820 kb on + strand, within ABIE40_RS19705 at 36.820 kb on + strand, within ABIE40_RS19705 at 36.820 kb on + strand, within ABIE40_RS19705 at 36.821 kb on - strand, within ABIE40_RS19705 at 36.995 kb on + strand at 36.996 kb on - strand at 37.119 kb on + strand, within ABIE40_RS19710 at 37.148 kb on + strand, within ABIE40_RS19710 at 37.248 kb on + strand, within ABIE40_RS19710 at 37.249 kb on - strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.275 kb on + strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.276 kb on - strand, within ABIE40_RS19710 at 37.430 kb on + strand, within ABIE40_RS19710 at 37.431 kb on - strand, within ABIE40_RS19710 at 37.461 kb on + strand, within ABIE40_RS19710 at 37.461 kb on + strand, within ABIE40_RS19710 at 37.461 kb on + strand, within ABIE40_RS19710 at 37.461 kb on + strand, within ABIE40_RS19710 at 37.462 kb on - strand, within ABIE40_RS19710 at 37.462 kb on - strand, within ABIE40_RS19710 at 37.462 kb on - strand, within ABIE40_RS19710 at 37.462 kb on - strand, within ABIE40_RS19710 at 37.680 kb on + strand, within ABIE40_RS19710 at 37.680 kb on + strand, within ABIE40_RS19710 at 37.681 kb on - strand, within ABIE40_RS19710 at 37.716 kb on + strand, within ABIE40_RS19710 at 37.737 kb on + strand, within ABIE40_RS19710 at 37.738 kb on - strand, within ABIE40_RS19710 at 37.791 kb on + strand, within ABIE40_RS19710 at 37.791 kb on + strand, within ABIE40_RS19710 at 37.791 kb on + strand, within ABIE40_RS19710 at 37.791 kb on + strand, within ABIE40_RS19710 at 37.791 kb on + strand, within ABIE40_RS19710 at 37.791 kb on + strand, within ABIE40_RS19710 at 37.792 kb on - strand, within ABIE40_RS19710 at 37.792 kb on - strand, within ABIE40_RS19710 at 37.792 kb on - strand, within ABIE40_RS19710 at 37.792 kb on - strand, within ABIE40_RS19710 at 37.803 kb on + strand, within ABIE40_RS19710 at 37.804 kb on - strand, within ABIE40_RS19710 at 37.804 kb on - strand, within ABIE40_RS19710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 35,217 + +1.0 35,262 + +0.9 35,315 - -3.0 35,315 - -1.7 35,351 + -0.7 35,467 + -3.0 35,467 + -1.7 35,650 + ABIE40_RS19700 0.31 -0.5 35,650 + ABIE40_RS19700 0.31 -0.7 35,764 - ABIE40_RS19700 0.45 -0.5 35,845 + ABIE40_RS19700 0.55 -0.5 35,846 - ABIE40_RS19700 0.55 -2.8 35,846 - ABIE40_RS19700 0.55 -0.7 35,846 - ABIE40_RS19700 0.55 +1.1 35,944 + ABIE40_RS19700 0.67 +0.1 35,992 + ABIE40_RS19700 0.73 +2.1 35,992 + ABIE40_RS19700 0.73 -0.2 36,005 - ABIE40_RS19700 0.74 -1.3 36,217 + -1.1 36,261 - -2.6 36,467 + ABIE40_RS19705 0.33 -0.5 36,468 - ABIE40_RS19705 0.33 -3.1 36,499 + ABIE40_RS19705 0.38 -2.8 36,499 + ABIE40_RS19705 0.38 -2.2 36,499 + ABIE40_RS19705 0.38 -3.8 36,500 - ABIE40_RS19705 0.38 -1.8 36,500 - ABIE40_RS19705 0.38 -5.3 36,500 - ABIE40_RS19705 0.38 -2.1 36,500 - ABIE40_RS19705 0.38 -2.7 36,631 + ABIE40_RS19705 0.55 -0.7 36,631 + ABIE40_RS19705 0.55 -2.7 36,632 - ABIE40_RS19705 0.55 -0.5 36,632 - ABIE40_RS19705 0.55 -3.2 36,632 - ABIE40_RS19705 0.55 -4.2 36,633 + ABIE40_RS19705 0.55 -4.1 36,820 + ABIE40_RS19705 0.80 -2.0 36,820 + ABIE40_RS19705 0.80 -2.3 36,820 + ABIE40_RS19705 0.80 -3.5 36,821 - ABIE40_RS19705 0.80 -4.8 36,995 + -0.7 36,996 - +0.5 37,119 + ABIE40_RS19710 0.14 -3.3 37,148 + ABIE40_RS19710 0.17 -2.1 37,248 + ABIE40_RS19710 0.26 -3.0 37,249 - ABIE40_RS19710 0.26 -4.6 37,275 + ABIE40_RS19710 0.28 -1.1 37,275 + ABIE40_RS19710 0.28 -2.3 37,275 + ABIE40_RS19710 0.28 -3.0 37,275 + ABIE40_RS19710 0.28 -0.9 37,275 + ABIE40_RS19710 0.28 -2.7 37,275 + ABIE40_RS19710 0.28 -3.3 37,275 + ABIE40_RS19710 0.28 -1.2 37,275 + ABIE40_RS19710 0.28 -3.7 37,275 + ABIE40_RS19710 0.28 -3.8 37,275 + ABIE40_RS19710 0.28 -3.8 37,276 - ABIE40_RS19710 0.28 -3.1 37,276 - ABIE40_RS19710 0.28 +1.1 37,276 - ABIE40_RS19710 0.28 -1.1 37,276 - ABIE40_RS19710 0.28 -3.6 37,276 - ABIE40_RS19710 0.28 -4.4 37,276 - ABIE40_RS19710 0.28 -3.3 37,276 - ABIE40_RS19710 0.28 -4.8 37,276 - ABIE40_RS19710 0.28 -0.2 37,276 - ABIE40_RS19710 0.28 -4.8 37,276 - ABIE40_RS19710 0.28 -3.6 37,276 - ABIE40_RS19710 0.28 -3.0 37,276 - ABIE40_RS19710 0.28 -3.9 37,276 - ABIE40_RS19710 0.28 -4.4 37,276 - ABIE40_RS19710 0.28 -5.8 37,430 + ABIE40_RS19710 0.43 -1.2 37,431 - ABIE40_RS19710 0.43 -0.9 37,461 + ABIE40_RS19710 0.45 -3.4 37,461 + ABIE40_RS19710 0.45 -1.1 37,461 + ABIE40_RS19710 0.45 -2.5 37,461 + ABIE40_RS19710 0.45 -2.0 37,462 - ABIE40_RS19710 0.45 -2.3 37,462 - ABIE40_RS19710 0.45 -1.2 37,462 - ABIE40_RS19710 0.45 -4.8 37,462 - ABIE40_RS19710 0.45 -2.7 37,680 + ABIE40_RS19710 0.66 -2.1 37,680 + ABIE40_RS19710 0.66 -2.8 37,681 - ABIE40_RS19710 0.66 -4.9 37,716 + ABIE40_RS19710 0.69 -2.5 37,737 + ABIE40_RS19710 0.71 -2.6 37,738 - ABIE40_RS19710 0.71 -1.6 37,791 + ABIE40_RS19710 0.76 -3.1 37,791 + ABIE40_RS19710 0.76 -2.5 37,791 + ABIE40_RS19710 0.76 -2.5 37,791 + ABIE40_RS19710 0.76 -1.8 37,791 + ABIE40_RS19710 0.76 -1.3 37,791 + ABIE40_RS19710 0.76 -2.5 37,792 - ABIE40_RS19710 0.76 -0.9 37,792 - ABIE40_RS19710 0.76 -1.9 37,792 - ABIE40_RS19710 0.76 -1.1 37,792 - ABIE40_RS19710 0.76 -4.7 37,803 + ABIE40_RS19710 0.77 -0.5 37,804 - ABIE40_RS19710 0.77 -4.5 37,804 - ABIE40_RS19710 0.77 -2.1
Or see this region's nucleotide sequence