Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04445 and ABIE40_RS04450 are separated by 78 nucleotides ABIE40_RS04450 and ABIE40_RS04455 overlap by 4 nucleotides ABIE40_RS04455 and ABIE40_RS04460 are separated by 43 nucleotides
ABIE40_RS04445: ABIE40_RS04445 - LacI family DNA-binding transcriptional regulator, at 876,707 to 877,741
_RS04445
ABIE40_RS04450: ABIE40_RS04450 - metalloregulator ArsR/SmtB family transcription factor, at 877,820 to 878,134
_RS04450
ABIE40_RS04455: ABIE40_RS04455 - SRPBCC domain-containing protein, at 878,131 to 878,490
_RS04455
ABIE40_RS04460: ABIE40_RS04460 - ATP-dependent Clp protease proteolytic subunit, at 878,534 to 879,145
_RS04460
Position (kb) 877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.881 kb on + strand, within ABIE40_RS04445 at 876.881 kb on + strand, within ABIE40_RS04445 at 876.881 kb on + strand, within ABIE40_RS04445 at 876.881 kb on + strand, within ABIE40_RS04445 at 876.881 kb on + strand, within ABIE40_RS04445 at 876.881 kb on + strand, within ABIE40_RS04445 at 876.881 kb on + strand, within ABIE40_RS04445 at 876.882 kb on - strand, within ABIE40_RS04445 at 876.882 kb on - strand, within ABIE40_RS04445 at 876.882 kb on - strand, within ABIE40_RS04445 at 876.882 kb on - strand, within ABIE40_RS04445 at 876.882 kb on - strand, within ABIE40_RS04445 at 876.971 kb on - strand, within ABIE40_RS04445 at 876.976 kb on + strand, within ABIE40_RS04445 at 876.977 kb on - strand, within ABIE40_RS04445 at 876.978 kb on + strand, within ABIE40_RS04445 at 877.028 kb on + strand, within ABIE40_RS04445 at 877.028 kb on + strand, within ABIE40_RS04445 at 877.028 kb on + strand, within ABIE40_RS04445 at 877.036 kb on + strand, within ABIE40_RS04445 at 877.036 kb on + strand, within ABIE40_RS04445 at 877.036 kb on + strand, within ABIE40_RS04445 at 877.036 kb on + strand, within ABIE40_RS04445 at 877.037 kb on - strand, within ABIE40_RS04445 at 877.043 kb on + strand, within ABIE40_RS04445 at 877.043 kb on + strand, within ABIE40_RS04445 at 877.043 kb on + strand, within ABIE40_RS04445 at 877.043 kb on + strand, within ABIE40_RS04445 at 877.043 kb on + strand, within ABIE40_RS04445 at 877.044 kb on - strand, within ABIE40_RS04445 at 877.044 kb on - strand, within ABIE40_RS04445 at 877.044 kb on - strand, within ABIE40_RS04445 at 877.044 kb on - strand, within ABIE40_RS04445 at 877.044 kb on - strand, within ABIE40_RS04445 at 877.044 kb on - strand, within ABIE40_RS04445 at 877.102 kb on + strand, within ABIE40_RS04445 at 877.127 kb on + strand, within ABIE40_RS04445 at 877.128 kb on - strand, within ABIE40_RS04445 at 877.178 kb on - strand, within ABIE40_RS04445 at 877.229 kb on + strand, within ABIE40_RS04445 at 877.229 kb on + strand, within ABIE40_RS04445 at 877.230 kb on - strand, within ABIE40_RS04445 at 877.230 kb on - strand, within ABIE40_RS04445 at 877.274 kb on + strand, within ABIE40_RS04445 at 877.275 kb on - strand, within ABIE40_RS04445 at 877.337 kb on + strand, within ABIE40_RS04445 at 877.337 kb on + strand, within ABIE40_RS04445 at 877.337 kb on + strand, within ABIE40_RS04445 at 877.338 kb on - strand, within ABIE40_RS04445 at 877.338 kb on - strand, within ABIE40_RS04445 at 877.338 kb on - strand, within ABIE40_RS04445 at 877.338 kb on - strand, within ABIE40_RS04445 at 877.546 kb on + strand, within ABIE40_RS04445 at 877.651 kb on + strand at 877.651 kb on + strand at 877.652 kb on - strand at 877.652 kb on - strand at 877.685 kb on + strand at 877.746 kb on + strand at 877.746 kb on + strand at 877.746 kb on + strand at 877.746 kb on + strand at 877.746 kb on + strand at 877.746 kb on + strand at 877.747 kb on - strand at 877.747 kb on - strand at 877.747 kb on - strand at 877.747 kb on - strand at 877.747 kb on - strand at 877.747 kb on - strand at 877.754 kb on + strand at 877.754 kb on + strand at 877.755 kb on - strand at 877.824 kb on + strand at 878.018 kb on + strand, within ABIE40_RS04450 at 878.018 kb on + strand, within ABIE40_RS04450 at 878.018 kb on + strand, within ABIE40_RS04450 at 878.019 kb on - strand, within ABIE40_RS04450 at 878.069 kb on + strand, within ABIE40_RS04450 at 878.070 kb on - strand, within ABIE40_RS04450 at 878.078 kb on + strand, within ABIE40_RS04450 at 878.079 kb on - strand, within ABIE40_RS04450 at 878.079 kb on - strand, within ABIE40_RS04450 at 878.235 kb on + strand, within ABIE40_RS04455 at 878.235 kb on + strand, within ABIE40_RS04455 at 878.236 kb on - strand, within ABIE40_RS04455 at 878.236 kb on - strand, within ABIE40_RS04455 at 878.349 kb on + strand, within ABIE40_RS04455 at 878.349 kb on + strand, within ABIE40_RS04455 at 878.349 kb on + strand, within ABIE40_RS04455 at 878.350 kb on - strand, within ABIE40_RS04455 at 878.579 kb on - strand at 878.602 kb on + strand, within ABIE40_RS04460 at 878.602 kb on + strand, within ABIE40_RS04460 at 878.602 kb on + strand, within ABIE40_RS04460 at 878.603 kb on - strand, within ABIE40_RS04460 at 878.603 kb on - strand, within ABIE40_RS04460 at 878.603 kb on - strand, within ABIE40_RS04460 at 878.606 kb on + strand, within ABIE40_RS04460 at 878.607 kb on - strand, within ABIE40_RS04460 at 878.607 kb on - strand, within ABIE40_RS04460 at 878.607 kb on - strand, within ABIE40_RS04460 at 878.607 kb on - strand, within ABIE40_RS04460 at 878.607 kb on - strand, within ABIE40_RS04460 at 878.654 kb on - strand, within ABIE40_RS04460 at 878.654 kb on - strand, within ABIE40_RS04460 at 878.732 kb on + strand, within ABIE40_RS04460 at 878.732 kb on + strand, within ABIE40_RS04460 at 878.732 kb on + strand, within ABIE40_RS04460 at 878.732 kb on + strand, within ABIE40_RS04460 at 878.732 kb on + strand, within ABIE40_RS04460 at 878.732 kb on + strand, within ABIE40_RS04460 at 878.732 kb on + strand, within ABIE40_RS04460 at 878.733 kb on - strand, within ABIE40_RS04460 at 878.733 kb on - strand, within ABIE40_RS04460 at 878.777 kb on + strand, within ABIE40_RS04460 at 878.777 kb on + strand, within ABIE40_RS04460 at 878.777 kb on + strand, within ABIE40_RS04460 at 878.777 kb on + strand, within ABIE40_RS04460 at 878.778 kb on - strand, within ABIE40_RS04460 at 878.778 kb on - strand, within ABIE40_RS04460 at 878.778 kb on - strand, within ABIE40_RS04460 at 878.778 kb on - strand, within ABIE40_RS04460 at 878.778 kb on - strand, within ABIE40_RS04460 at 878.778 kb on - strand, within ABIE40_RS04460 at 878.778 kb on - strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.792 kb on + strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.793 kb on - strand, within ABIE40_RS04460 at 878.812 kb on + strand, within ABIE40_RS04460 at 878.812 kb on + strand, within ABIE40_RS04460 at 878.812 kb on + strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 878.813 kb on - strand, within ABIE40_RS04460 at 879.006 kb on - strand, within ABIE40_RS04460 at 879.029 kb on + strand, within ABIE40_RS04460 at 879.029 kb on + strand, within ABIE40_RS04460 at 879.100 kb on + strand at 879.101 kb on - strand at 879.101 kb on - strand at 879.101 kb on - strand at 879.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 876,881 + ABIE40_RS04445 0.17 -0.6 876,881 + ABIE40_RS04445 0.17 -0.3 876,881 + ABIE40_RS04445 0.17 +1.2 876,881 + ABIE40_RS04445 0.17 +0.8 876,881 + ABIE40_RS04445 0.17 -0.5 876,881 + ABIE40_RS04445 0.17 +0.4 876,881 + ABIE40_RS04445 0.17 -0.3 876,882 - ABIE40_RS04445 0.17 +0.3 876,882 - ABIE40_RS04445 0.17 +1.6 876,882 - ABIE40_RS04445 0.17 +0.2 876,882 - ABIE40_RS04445 0.17 -0.5 876,882 - ABIE40_RS04445 0.17 -0.8 876,971 - ABIE40_RS04445 0.26 -2.5 876,976 + ABIE40_RS04445 0.26 -0.1 876,977 - ABIE40_RS04445 0.26 -1.2 876,978 + ABIE40_RS04445 0.26 -0.2 877,028 + ABIE40_RS04445 0.31 +0.4 877,028 + ABIE40_RS04445 0.31 +0.9 877,028 + ABIE40_RS04445 0.31 +1.8 877,036 + ABIE40_RS04445 0.32 +2.0 877,036 + ABIE40_RS04445 0.32 -0.3 877,036 + ABIE40_RS04445 0.32 -2.1 877,036 + ABIE40_RS04445 0.32 +0.7 877,037 - ABIE40_RS04445 0.32 +0.1 877,043 + ABIE40_RS04445 0.32 -1.0 877,043 + ABIE40_RS04445 0.32 -0.6 877,043 + ABIE40_RS04445 0.32 -0.1 877,043 + ABIE40_RS04445 0.32 +0.5 877,043 + ABIE40_RS04445 0.32 -1.5 877,044 - ABIE40_RS04445 0.33 -0.6 877,044 - ABIE40_RS04445 0.33 -1.8 877,044 - ABIE40_RS04445 0.33 -2.3 877,044 - ABIE40_RS04445 0.33 -0.9 877,044 - ABIE40_RS04445 0.33 +1.2 877,044 - ABIE40_RS04445 0.33 -0.6 877,102 + ABIE40_RS04445 0.38 +0.1 877,127 + ABIE40_RS04445 0.41 -0.6 877,128 - ABIE40_RS04445 0.41 -0.9 877,178 - ABIE40_RS04445 0.46 +1.2 877,229 + ABIE40_RS04445 0.50 -0.2 877,229 + ABIE40_RS04445 0.50 +0.8 877,230 - ABIE40_RS04445 0.51 +1.4 877,230 - ABIE40_RS04445 0.51 -0.6 877,274 + ABIE40_RS04445 0.55 +0.3 877,275 - ABIE40_RS04445 0.55 -1.7 877,337 + ABIE40_RS04445 0.61 -0.1 877,337 + ABIE40_RS04445 0.61 +0.5 877,337 + ABIE40_RS04445 0.61 +1.1 877,338 - ABIE40_RS04445 0.61 -2.6 877,338 - ABIE40_RS04445 0.61 -0.9 877,338 - ABIE40_RS04445 0.61 -0.5 877,338 - ABIE40_RS04445 0.61 -0.4 877,546 + ABIE40_RS04445 0.81 +0.7 877,651 + -1.9 877,651 + +1.8 877,652 - -2.8 877,652 - +0.1 877,685 + +2.0 877,746 + -0.8 877,746 + +1.2 877,746 + -1.1 877,746 + -0.8 877,746 + -1.7 877,746 + +0.8 877,747 - -0.5 877,747 - +0.7 877,747 - -0.2 877,747 - -1.0 877,747 - +0.0 877,747 - +0.4 877,754 + -2.9 877,754 + -0.2 877,755 - +0.7 877,824 + +0.1 878,018 + ABIE40_RS04450 0.63 +0.9 878,018 + ABIE40_RS04450 0.63 +0.8 878,018 + ABIE40_RS04450 0.63 +1.1 878,019 - ABIE40_RS04450 0.63 -1.3 878,069 + ABIE40_RS04450 0.79 +1.0 878,070 - ABIE40_RS04450 0.79 -0.6 878,078 + ABIE40_RS04450 0.82 +0.3 878,079 - ABIE40_RS04450 0.82 +0.9 878,079 - ABIE40_RS04450 0.82 -1.4 878,235 + ABIE40_RS04455 0.29 +1.8 878,235 + ABIE40_RS04455 0.29 -0.1 878,236 - ABIE40_RS04455 0.29 -1.5 878,236 - ABIE40_RS04455 0.29 -0.8 878,349 + ABIE40_RS04455 0.61 +1.2 878,349 + ABIE40_RS04455 0.61 -1.8 878,349 + ABIE40_RS04455 0.61 -0.4 878,350 - ABIE40_RS04455 0.61 -2.5 878,579 - -0.0 878,602 + ABIE40_RS04460 0.11 -0.8 878,602 + ABIE40_RS04460 0.11 -0.5 878,602 + ABIE40_RS04460 0.11 +0.4 878,603 - ABIE40_RS04460 0.11 -0.1 878,603 - ABIE40_RS04460 0.11 +2.2 878,603 - ABIE40_RS04460 0.11 -0.3 878,606 + ABIE40_RS04460 0.12 -1.6 878,607 - ABIE40_RS04460 0.12 -0.6 878,607 - ABIE40_RS04460 0.12 -0.4 878,607 - ABIE40_RS04460 0.12 -0.8 878,607 - ABIE40_RS04460 0.12 +0.2 878,607 - ABIE40_RS04460 0.12 -0.3 878,654 - ABIE40_RS04460 0.20 -0.7 878,654 - ABIE40_RS04460 0.20 +0.4 878,732 + ABIE40_RS04460 0.32 -1.8 878,732 + ABIE40_RS04460 0.32 -0.1 878,732 + ABIE40_RS04460 0.32 -0.1 878,732 + ABIE40_RS04460 0.32 +0.1 878,732 + ABIE40_RS04460 0.32 +0.4 878,732 + ABIE40_RS04460 0.32 -0.4 878,732 + ABIE40_RS04460 0.32 -0.3 878,733 - ABIE40_RS04460 0.33 -1.8 878,733 - ABIE40_RS04460 0.33 -1.7 878,777 + ABIE40_RS04460 0.40 -0.1 878,777 + ABIE40_RS04460 0.40 -0.5 878,777 + ABIE40_RS04460 0.40 -0.8 878,777 + ABIE40_RS04460 0.40 +0.3 878,778 - ABIE40_RS04460 0.40 -0.3 878,778 - ABIE40_RS04460 0.40 -0.1 878,778 - ABIE40_RS04460 0.40 +0.1 878,778 - ABIE40_RS04460 0.40 +1.8 878,778 - ABIE40_RS04460 0.40 +0.8 878,778 - ABIE40_RS04460 0.40 -1.0 878,778 - ABIE40_RS04460 0.40 -0.2 878,792 + ABIE40_RS04460 0.42 -1.1 878,792 + ABIE40_RS04460 0.42 +0.5 878,792 + ABIE40_RS04460 0.42 +0.6 878,792 + ABIE40_RS04460 0.42 +1.2 878,792 + ABIE40_RS04460 0.42 -1.4 878,792 + ABIE40_RS04460 0.42 +0.2 878,792 + ABIE40_RS04460 0.42 +0.4 878,792 + ABIE40_RS04460 0.42 +1.5 878,792 + ABIE40_RS04460 0.42 +0.1 878,792 + ABIE40_RS04460 0.42 +0.3 878,793 - ABIE40_RS04460 0.42 +1.0 878,793 - ABIE40_RS04460 0.42 -1.3 878,793 - ABIE40_RS04460 0.42 -0.5 878,793 - ABIE40_RS04460 0.42 +0.1 878,793 - ABIE40_RS04460 0.42 +0.4 878,793 - ABIE40_RS04460 0.42 -0.8 878,793 - ABIE40_RS04460 0.42 -0.9 878,793 - ABIE40_RS04460 0.42 +0.6 878,793 - ABIE40_RS04460 0.42 +0.2 878,793 - ABIE40_RS04460 0.42 +0.4 878,793 - ABIE40_RS04460 0.42 +1.7 878,793 - ABIE40_RS04460 0.42 +0.2 878,793 - ABIE40_RS04460 0.42 +0.2 878,812 + ABIE40_RS04460 0.45 +0.1 878,812 + ABIE40_RS04460 0.45 -0.1 878,812 + ABIE40_RS04460 0.45 +0.2 878,813 - ABIE40_RS04460 0.46 +1.9 878,813 - ABIE40_RS04460 0.46 -0.9 878,813 - ABIE40_RS04460 0.46 -0.1 878,813 - ABIE40_RS04460 0.46 +0.1 878,813 - ABIE40_RS04460 0.46 +0.5 878,813 - ABIE40_RS04460 0.46 -1.2 878,813 - ABIE40_RS04460 0.46 +0.5 878,813 - ABIE40_RS04460 0.46 +0.4 879,006 - ABIE40_RS04460 0.77 -0.2 879,029 + ABIE40_RS04460 0.81 +0.2 879,029 + ABIE40_RS04460 0.81 +0.1 879,100 + +0.0 879,101 - +0.7 879,101 - +0.9 879,101 - -1.2 879,101 - -0.2
Or see this region's nucleotide sequence