Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03840

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03835 and ABIE40_RS03840 are separated by 401 nucleotidesABIE40_RS03840 and ABIE40_RS03845 are separated by 161 nucleotidesABIE40_RS03845 and ABIE40_RS03850 are separated by 53 nucleotides ABIE40_RS03835: ABIE40_RS03835 - DUF6656 family protein, at 760,051 to 760,656 _RS03835 ABIE40_RS03840: ABIE40_RS03840 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 761,058 to 762,302 _RS03840 ABIE40_RS03845: ABIE40_RS03845 - BA14K family protein, at 762,464 to 762,913 _RS03845 ABIE40_RS03850: ABIE40_RS03850 - transporter, at 762,967 to 763,962 _RS03850 Position (kb) 761 762 763Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 760.194 kb on + strand, within ABIE40_RS03835at 760.194 kb on + strand, within ABIE40_RS03835at 760.195 kb on - strand, within ABIE40_RS03835at 760.226 kb on + strand, within ABIE40_RS03835at 760.226 kb on + strand, within ABIE40_RS03835at 760.226 kb on + strand, within ABIE40_RS03835at 760.226 kb on + strand, within ABIE40_RS03835at 760.227 kb on - strand, within ABIE40_RS03835at 760.227 kb on - strand, within ABIE40_RS03835at 760.227 kb on - strand, within ABIE40_RS03835at 760.227 kb on - strand, within ABIE40_RS03835at 760.227 kb on - strand, within ABIE40_RS03835at 760.227 kb on - strand, within ABIE40_RS03835at 760.238 kb on + strand, within ABIE40_RS03835at 760.238 kb on + strand, within ABIE40_RS03835at 760.239 kb on - strand, within ABIE40_RS03835at 760.290 kb on - strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.304 kb on + strand, within ABIE40_RS03835at 760.305 kb on - strand, within ABIE40_RS03835at 760.329 kb on - strand, within ABIE40_RS03835at 760.368 kb on - strand, within ABIE40_RS03835at 760.521 kb on - strand, within ABIE40_RS03835at 760.521 kb on - strand, within ABIE40_RS03835at 760.521 kb on - strand, within ABIE40_RS03835at 760.641 kb on - strandat 760.661 kb on + strandat 760.664 kb on - strandat 760.671 kb on - strandat 760.696 kb on + strandat 760.696 kb on + strandat 760.697 kb on - strandat 760.697 kb on - strandat 760.710 kb on + strandat 760.710 kb on + strandat 760.711 kb on - strandat 760.711 kb on - strandat 760.711 kb on - strandat 760.711 kb on - strandat 760.711 kb on - strandat 760.721 kb on + strandat 760.722 kb on - strandat 760.722 kb on - strandat 760.781 kb on + strandat 760.929 kb on + strandat 760.930 kb on - strandat 760.959 kb on + strandat 760.959 kb on + strandat 760.959 kb on + strandat 760.959 kb on + strandat 760.960 kb on - strandat 760.960 kb on - strandat 760.960 kb on - strandat 760.960 kb on - strandat 761.051 kb on + strandat 761.052 kb on - strandat 761.130 kb on + strandat 761.130 kb on + strandat 761.130 kb on + strandat 761.130 kb on + strandat 761.130 kb on + strandat 761.130 kb on + strandat 761.131 kb on - strandat 761.131 kb on - strandat 761.146 kb on - strandat 761.146 kb on - strandat 761.172 kb on + strandat 761.172 kb on + strandat 761.172 kb on + strandat 761.172 kb on + strandat 761.172 kb on + strandat 761.173 kb on - strandat 761.192 kb on + strand, within ABIE40_RS03840at 761.193 kb on - strand, within ABIE40_RS03840at 761.229 kb on + strand, within ABIE40_RS03840at 761.230 kb on - strand, within ABIE40_RS03840at 761.230 kb on - strand, within ABIE40_RS03840at 761.253 kb on + strand, within ABIE40_RS03840at 761.391 kb on + strand, within ABIE40_RS03840at 761.391 kb on + strand, within ABIE40_RS03840at 761.391 kb on + strand, within ABIE40_RS03840at 761.493 kb on + strand, within ABIE40_RS03840at 761.494 kb on - strand, within ABIE40_RS03840at 761.495 kb on + strand, within ABIE40_RS03840at 761.495 kb on + strand, within ABIE40_RS03840at 761.495 kb on + strand, within ABIE40_RS03840at 761.495 kb on + strand, within ABIE40_RS03840at 761.495 kb on + strand, within ABIE40_RS03840at 761.495 kb on + strand, within ABIE40_RS03840at 761.496 kb on - strand, within ABIE40_RS03840at 761.496 kb on - strand, within ABIE40_RS03840at 761.559 kb on + strand, within ABIE40_RS03840at 761.559 kb on + strand, within ABIE40_RS03840at 761.559 kb on + strand, within ABIE40_RS03840at 761.559 kb on + strand, within ABIE40_RS03840at 761.560 kb on - strand, within ABIE40_RS03840at 761.560 kb on - strand, within ABIE40_RS03840at 761.560 kb on - strand, within ABIE40_RS03840at 761.588 kb on + strand, within ABIE40_RS03840at 761.589 kb on - strand, within ABIE40_RS03840at 761.661 kb on + strand, within ABIE40_RS03840at 761.661 kb on + strand, within ABIE40_RS03840at 761.868 kb on + strand, within ABIE40_RS03840at 761.868 kb on + strand, within ABIE40_RS03840at 761.868 kb on + strand, within ABIE40_RS03840at 761.868 kb on + strand, within ABIE40_RS03840at 761.868 kb on + strand, within ABIE40_RS03840at 761.868 kb on + strand, within ABIE40_RS03840at 761.869 kb on - strand, within ABIE40_RS03840at 761.869 kb on - strand, within ABIE40_RS03840at 761.869 kb on - strand, within ABIE40_RS03840at 761.869 kb on - strand, within ABIE40_RS03840at 761.869 kb on - strand, within ABIE40_RS03840at 762.180 kb on + strandat 762.240 kb on + strandat 762.241 kb on - strandat 762.241 kb on - strandat 762.364 kb on + strandat 762.364 kb on + strandat 762.365 kb on - strandat 762.460 kb on + strandat 762.460 kb on + strandat 762.461 kb on - strandat 762.478 kb on + strandat 762.479 kb on - strandat 762.479 kb on - strandat 762.479 kb on - strandat 762.620 kb on + strand, within ABIE40_RS03845at 762.621 kb on - strand, within ABIE40_RS03845at 762.624 kb on - strand, within ABIE40_RS03845at 762.641 kb on + strand, within ABIE40_RS03845at 762.642 kb on - strand, within ABIE40_RS03845at 762.665 kb on + strand, within ABIE40_RS03845at 762.665 kb on + strand, within ABIE40_RS03845at 762.666 kb on - strand, within ABIE40_RS03845at 762.666 kb on - strand, within ABIE40_RS03845at 762.669 kb on - strand, within ABIE40_RS03845at 762.689 kb on + strand, within ABIE40_RS03845at 762.689 kb on + strand, within ABIE40_RS03845at 762.690 kb on - strand, within ABIE40_RS03845at 762.690 kb on - strand, within ABIE40_RS03845at 762.690 kb on - strand, within ABIE40_RS03845at 762.690 kb on - strand, within ABIE40_RS03845at 762.690 kb on - strand, within ABIE40_RS03845at 762.690 kb on - strand, within ABIE40_RS03845at 762.690 kb on - strand, within ABIE40_RS03845at 762.691 kb on + strand, within ABIE40_RS03845at 762.767 kb on + strand, within ABIE40_RS03845at 762.767 kb on + strand, within ABIE40_RS03845at 762.767 kb on + strand, within ABIE40_RS03845at 762.768 kb on - strand, within ABIE40_RS03845at 762.768 kb on - strand, within ABIE40_RS03845at 762.770 kb on + strand, within ABIE40_RS03845at 762.770 kb on + strand, within ABIE40_RS03845at 762.770 kb on + strand, within ABIE40_RS03845at 762.770 kb on + strand, within ABIE40_RS03845at 762.789 kb on - strand, within ABIE40_RS03845at 762.845 kb on + strand, within ABIE40_RS03845at 762.845 kb on + strand, within ABIE40_RS03845at 762.876 kb on - strandat 762.899 kb on + strandat 762.900 kb on - strandat 762.908 kb on + strandat 762.908 kb on + strandat 763.148 kb on + strand, within ABIE40_RS03850at 763.148 kb on + strand, within ABIE40_RS03850at 763.148 kb on + strand, within ABIE40_RS03850at 763.148 kb on + strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.149 kb on - strand, within ABIE40_RS03850at 763.226 kb on + strand, within ABIE40_RS03850at 763.226 kb on + strand, within ABIE40_RS03850at 763.226 kb on + strand, within ABIE40_RS03850at 763.227 kb on - strand, within ABIE40_RS03850at 763.227 kb on - strand, within ABIE40_RS03850at 763.227 kb on - strand, within ABIE40_RS03850at 763.227 kb on - strand, within ABIE40_RS03850at 763.227 kb on - strand, within ABIE40_RS03850at 763.227 kb on - strand, within ABIE40_RS03850at 763.227 kb on - strand, within ABIE40_RS03850at 763.276 kb on - strand, within ABIE40_RS03850

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
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760,194 + ABIE40_RS03835 0.24 -1.0
760,194 + ABIE40_RS03835 0.24 -0.4
760,195 - ABIE40_RS03835 0.24 +0.4
760,226 + ABIE40_RS03835 0.29 -1.2
760,226 + ABIE40_RS03835 0.29 -0.1
760,226 + ABIE40_RS03835 0.29 -0.4
760,226 + ABIE40_RS03835 0.29 -0.4
760,227 - ABIE40_RS03835 0.29 -1.0
760,227 - ABIE40_RS03835 0.29 -0.0
760,227 - ABIE40_RS03835 0.29 +0.7
760,227 - ABIE40_RS03835 0.29 +0.4
760,227 - ABIE40_RS03835 0.29 -1.0
760,227 - ABIE40_RS03835 0.29 +0.2
760,238 + ABIE40_RS03835 0.31 -0.1
760,238 + ABIE40_RS03835 0.31 -1.4
760,239 - ABIE40_RS03835 0.31 +0.4
760,290 - ABIE40_RS03835 0.39 -2.1
760,304 + ABIE40_RS03835 0.42 -0.6
760,304 + ABIE40_RS03835 0.42 +0.0
760,304 + ABIE40_RS03835 0.42 -0.3
760,304 + ABIE40_RS03835 0.42 +1.3
760,304 + ABIE40_RS03835 0.42 -0.5
760,304 + ABIE40_RS03835 0.42 -0.2
760,304 + ABIE40_RS03835 0.42 -0.4
760,304 + ABIE40_RS03835 0.42 -1.6
760,305 - ABIE40_RS03835 0.42 +0.7
760,329 - ABIE40_RS03835 0.46 -0.9
760,368 - ABIE40_RS03835 0.52 -1.6
760,521 - ABIE40_RS03835 0.78 -0.1
760,521 - ABIE40_RS03835 0.78 -0.2
760,521 - ABIE40_RS03835 0.78 +0.4
760,641 - +0.4
760,661 + -1.2
760,664 - +0.9
760,671 - +0.7
760,696 + +0.4
760,696 + -1.1
760,697 - +0.8
760,697 - -3.7
760,710 + -0.2
760,710 + +0.6
760,711 - -0.1
760,711 - -2.5
760,711 - -1.3
760,711 - -0.4
760,711 - -0.1
760,721 + -0.0
760,722 - -0.3
760,722 - -0.3
760,781 + -1.0
760,929 + -0.1
760,930 - -1.9
760,959 + +0.3
760,959 + -2.2
760,959 + -0.7
760,959 + -1.9
760,960 - -2.6
760,960 - -2.4
760,960 - -2.3
760,960 - -1.1
761,051 + -2.6
761,052 - +1.3
761,130 + -0.7
761,130 + -0.3
761,130 + -0.1
761,130 + +0.0
761,130 + +0.5
761,130 + -2.6
761,131 - -1.3
761,131 - +2.3
761,146 - +2.3
761,146 - -1.2
761,172 + -2.0
761,172 + -1.1
761,172 + -1.0
761,172 + -1.2
761,172 + -0.7
761,173 - -2.1
761,192 + ABIE40_RS03840 0.11 -1.3
761,193 - ABIE40_RS03840 0.11 -2.1
761,229 + ABIE40_RS03840 0.14 -3.3
761,230 - ABIE40_RS03840 0.14 -0.9
761,230 - ABIE40_RS03840 0.14 -0.9
761,253 + ABIE40_RS03840 0.16 -1.8
761,391 + ABIE40_RS03840 0.27 -3.3
761,391 + ABIE40_RS03840 0.27 -2.1
761,391 + ABIE40_RS03840 0.27 +2.3
761,493 + ABIE40_RS03840 0.35 -1.3
761,494 - ABIE40_RS03840 0.35 +2.3
761,495 + ABIE40_RS03840 0.35 +0.3
761,495 + ABIE40_RS03840 0.35 -0.9
761,495 + ABIE40_RS03840 0.35 -2.0
761,495 + ABIE40_RS03840 0.35 -2.1
761,495 + ABIE40_RS03840 0.35 -2.6
761,495 + ABIE40_RS03840 0.35 +0.3
761,496 - ABIE40_RS03840 0.35 -0.8
761,496 - ABIE40_RS03840 0.35 +2.3
761,559 + ABIE40_RS03840 0.40 -1.7
761,559 + ABIE40_RS03840 0.40 -4.7
761,559 + ABIE40_RS03840 0.40 -2.1
761,559 + ABIE40_RS03840 0.40 -1.1
761,560 - ABIE40_RS03840 0.40 +2.3
761,560 - ABIE40_RS03840 0.40 -1.9
761,560 - ABIE40_RS03840 0.40 +1.3
761,588 + ABIE40_RS03840 0.43 -2.6
761,589 - ABIE40_RS03840 0.43 +2.3
761,661 + ABIE40_RS03840 0.48 -3.0
761,661 + ABIE40_RS03840 0.48 -2.4
761,868 + ABIE40_RS03840 0.65 -3.0
761,868 + ABIE40_RS03840 0.65 -0.7
761,868 + ABIE40_RS03840 0.65 -2.3
761,868 + ABIE40_RS03840 0.65 -0.1
761,868 + ABIE40_RS03840 0.65 -2.3
761,868 + ABIE40_RS03840 0.65 -1.7
761,869 - ABIE40_RS03840 0.65 -0.3
761,869 - ABIE40_RS03840 0.65 +1.3
761,869 - ABIE40_RS03840 0.65 -3.0
761,869 - ABIE40_RS03840 0.65 +0.7
761,869 - ABIE40_RS03840 0.65 +1.3
762,180 + -4.3
762,240 + -0.7
762,241 - +0.7
762,241 - +0.7
762,364 + +0.7
762,364 + +0.2
762,365 - +0.2
762,460 + -0.6
762,460 + -0.2
762,461 - +0.4
762,478 + -0.4
762,479 - +0.3
762,479 - -1.1
762,479 - -0.0
762,620 + ABIE40_RS03845 0.35 +0.2
762,621 - ABIE40_RS03845 0.35 -1.2
762,624 - ABIE40_RS03845 0.36 +0.7
762,641 + ABIE40_RS03845 0.39 -0.1
762,642 - ABIE40_RS03845 0.40 -0.0
762,665 + ABIE40_RS03845 0.45 -0.1
762,665 + ABIE40_RS03845 0.45 +0.2
762,666 - ABIE40_RS03845 0.45 -0.0
762,666 - ABIE40_RS03845 0.45 +1.5
762,669 - ABIE40_RS03845 0.46 -0.9
762,689 + ABIE40_RS03845 0.50 -0.6
762,689 + ABIE40_RS03845 0.50 -0.1
762,690 - ABIE40_RS03845 0.50 -0.9
762,690 - ABIE40_RS03845 0.50 +1.4
762,690 - ABIE40_RS03845 0.50 +0.6
762,690 - ABIE40_RS03845 0.50 +0.3
762,690 - ABIE40_RS03845 0.50 +0.0
762,690 - ABIE40_RS03845 0.50 +0.3
762,690 - ABIE40_RS03845 0.50 -0.0
762,691 + ABIE40_RS03845 0.50 +0.3
762,767 + ABIE40_RS03845 0.67 +1.0
762,767 + ABIE40_RS03845 0.67 +0.1
762,767 + ABIE40_RS03845 0.67 +0.4
762,768 - ABIE40_RS03845 0.68 +0.0
762,768 - ABIE40_RS03845 0.68 -1.4
762,770 + ABIE40_RS03845 0.68 +0.3
762,770 + ABIE40_RS03845 0.68 +0.6
762,770 + ABIE40_RS03845 0.68 +0.5
762,770 + ABIE40_RS03845 0.68 -0.4
762,789 - ABIE40_RS03845 0.72 +0.1
762,845 + ABIE40_RS03845 0.85 -0.8
762,845 + ABIE40_RS03845 0.85 +0.7
762,876 - +0.3
762,899 + +0.4
762,900 - -0.7
762,908 + +1.2
762,908 + +0.9
763,148 + ABIE40_RS03850 0.18 +0.2
763,148 + ABIE40_RS03850 0.18 +0.3
763,148 + ABIE40_RS03850 0.18 +0.9
763,148 + ABIE40_RS03850 0.18 +0.1
763,149 - ABIE40_RS03850 0.18 -0.1
763,149 - ABIE40_RS03850 0.18 +0.8
763,149 - ABIE40_RS03850 0.18 -0.1
763,149 - ABIE40_RS03850 0.18 +1.9
763,149 - ABIE40_RS03850 0.18 +0.3
763,149 - ABIE40_RS03850 0.18 +0.7
763,149 - ABIE40_RS03850 0.18 -0.1
763,149 - ABIE40_RS03850 0.18 -0.4
763,149 - ABIE40_RS03850 0.18 -0.1
763,226 + ABIE40_RS03850 0.26 +0.0
763,226 + ABIE40_RS03850 0.26 -0.1
763,226 + ABIE40_RS03850 0.26 -1.1
763,227 - ABIE40_RS03850 0.26 +0.8
763,227 - ABIE40_RS03850 0.26 -0.6
763,227 - ABIE40_RS03850 0.26 +0.3
763,227 - ABIE40_RS03850 0.26 -0.3
763,227 - ABIE40_RS03850 0.26 -0.8
763,227 - ABIE40_RS03850 0.26 +0.8
763,227 - ABIE40_RS03850 0.26 -1.7
763,276 - ABIE40_RS03850 0.31 -0.6

Or see this region's nucleotide sequence