Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03295 and ABIE40_RS03300 are separated by 212 nucleotides ABIE40_RS03300 and ABIE40_RS03305 are separated by 129 nucleotides ABIE40_RS03305 and ABIE40_RS03310 are separated by 200 nucleotides ABIE40_RS03310 and ABIE40_RS03315 are separated by 128 nucleotides
ABIE40_RS03295: ABIE40_RS03295 - ATP-binding protein, at 656,989 to 660,609
_RS03295
ABIE40_RS03300: ABIE40_RS03300 - phasin, at 660,822 to 661,272
_RS03300
ABIE40_RS03305: ABIE40_RS03305 - tRNA-His, at 661,402 to 661,478
_RS03305
ABIE40_RS03310: ABIE40_RS03310 - helix-turn-helix transcriptional regulator, at 661,679 to 661,924
_RS03310
ABIE40_RS03315: ABIE40_RS03315 - DUF4174 domain-containing protein, at 662,053 to 662,490
_RS03315
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 660.639 kb on - strand at 660.644 kb on - strand at 660.652 kb on - strand at 660.713 kb on - strand at 660.736 kb on - strand at 660.736 kb on - strand at 660.736 kb on - strand at 660.753 kb on - strand at 660.762 kb on + strand at 660.763 kb on - strand at 660.763 kb on - strand at 660.764 kb on + strand at 660.764 kb on + strand at 660.765 kb on - strand at 660.765 kb on - strand at 660.765 kb on - strand at 660.765 kb on - strand at 660.765 kb on - strand at 660.766 kb on + strand at 660.766 kb on + strand at 660.767 kb on - strand at 660.767 kb on - strand at 660.782 kb on + strand at 660.783 kb on - strand at 660.783 kb on - strand at 660.828 kb on - strand at 660.828 kb on - strand at 660.828 kb on - strand at 660.833 kb on - strand at 660.936 kb on + strand, within ABIE40_RS03300 at 660.936 kb on + strand, within ABIE40_RS03300 at 660.937 kb on - strand, within ABIE40_RS03300 at 660.937 kb on - strand, within ABIE40_RS03300 at 660.937 kb on - strand, within ABIE40_RS03300 at 660.937 kb on - strand, within ABIE40_RS03300 at 661.543 kb on + strand at 661.568 kb on - strand at 661.568 kb on - strand at 661.571 kb on + strand at 661.603 kb on + strand at 661.604 kb on - strand at 661.651 kb on - strand at 661.665 kb on - strand at 661.677 kb on + strand at 661.677 kb on + strand at 661.778 kb on + strand, within ABIE40_RS03310 at 661.778 kb on + strand, within ABIE40_RS03310 at 661.778 kb on + strand, within ABIE40_RS03310 at 661.778 kb on + strand, within ABIE40_RS03310 at 661.778 kb on + strand, within ABIE40_RS03310 at 661.779 kb on - strand, within ABIE40_RS03310 at 661.779 kb on - strand, within ABIE40_RS03310 at 661.779 kb on - strand, within ABIE40_RS03310 at 661.828 kb on + strand, within ABIE40_RS03310 at 661.922 kb on + strand at 661.922 kb on + strand at 661.922 kb on + strand at 661.922 kb on + strand at 661.923 kb on - strand at 661.923 kb on - strand at 661.923 kb on - strand at 661.923 kb on - strand at 662.037 kb on - strand at 662.044 kb on - strand at 662.069 kb on + strand at 662.069 kb on + strand at 662.070 kb on - strand at 662.070 kb on - strand at 662.070 kb on - strand at 662.070 kb on - strand at 662.070 kb on - strand at 662.071 kb on + strand at 662.072 kb on - strand at 662.107 kb on + strand, within ABIE40_RS03315 at 662.107 kb on + strand, within ABIE40_RS03315 at 662.178 kb on + strand, within ABIE40_RS03315 at 662.178 kb on + strand, within ABIE40_RS03315 at 662.178 kb on + strand, within ABIE40_RS03315 at 662.179 kb on - strand, within ABIE40_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 660,639 - -0.6 660,644 - -0.0 660,652 - -0.3 660,713 - +0.7 660,736 - -0.6 660,736 - -0.8 660,736 - -0.1 660,753 - -2.7 660,762 + -0.1 660,763 - -1.2 660,763 - -0.3 660,764 + -1.9 660,764 + -0.5 660,765 - +1.2 660,765 - -0.3 660,765 - -3.1 660,765 - -1.1 660,765 - -0.9 660,766 + -0.3 660,766 + +0.5 660,767 - -0.9 660,767 - -2.0 660,782 + +0.2 660,783 - -1.2 660,783 - -0.9 660,828 - -1.8 660,828 - +0.2 660,828 - +3.2 660,833 - -0.8 660,936 + ABIE40_RS03300 0.25 +0.8 660,936 + ABIE40_RS03300 0.25 +1.1 660,937 - ABIE40_RS03300 0.25 -0.1 660,937 - ABIE40_RS03300 0.25 +1.2 660,937 - ABIE40_RS03300 0.25 -0.2 660,937 - ABIE40_RS03300 0.25 +0.1 661,543 + -1.4 661,568 - -0.1 661,568 - -0.6 661,571 + -0.6 661,603 + +0.3 661,604 - +3.2 661,651 - -2.0 661,665 - -1.5 661,677 + +0.6 661,677 + +0.6 661,778 + ABIE40_RS03310 0.40 -0.5 661,778 + ABIE40_RS03310 0.40 -0.2 661,778 + ABIE40_RS03310 0.40 +0.7 661,778 + ABIE40_RS03310 0.40 -0.5 661,778 + ABIE40_RS03310 0.40 +0.8 661,779 - ABIE40_RS03310 0.41 +2.2 661,779 - ABIE40_RS03310 0.41 -0.1 661,779 - ABIE40_RS03310 0.41 -0.6 661,828 + ABIE40_RS03310 0.61 -0.2 661,922 + +0.0 661,922 + +2.2 661,922 + +1.1 661,922 + +0.3 661,923 - +0.3 661,923 - -1.4 661,923 - -1.6 661,923 - -1.6 662,037 - +1.4 662,044 - +0.6 662,069 + +1.0 662,069 + +1.2 662,070 - +0.3 662,070 - +1.3 662,070 - +0.2 662,070 - -1.5 662,070 - -0.2 662,071 + -1.5 662,072 - +0.8 662,107 + ABIE40_RS03315 0.12 +0.4 662,107 + ABIE40_RS03315 0.12 +0.5 662,178 + ABIE40_RS03315 0.29 -0.8 662,178 + ABIE40_RS03315 0.29 +0.8 662,178 + ABIE40_RS03315 0.29 -0.3 662,179 - ABIE40_RS03315 0.29 -0.7
Or see this region's nucleotide sequence