Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02715 and ABIE40_RS02720 are separated by 154 nucleotides ABIE40_RS02720 and ABIE40_RS02725 are separated by 53 nucleotides
ABIE40_RS02715: ABIE40_RS02715 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 537,572 to 538,864
_RS02715
ABIE40_RS02720: ABIE40_RS02720 - DUF2948 family protein, at 539,019 to 539,456
_RS02720
ABIE40_RS02725: ABIE40_RS02725 - histidinol dehydrogenase, at 539,510 to 540,808
_RS02725
Position (kb) 539
540 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 538.888 kb on + strand at 538.888 kb on + strand at 538.888 kb on + strand at 538.889 kb on - strand at 538.889 kb on - strand at 538.889 kb on - strand at 538.953 kb on + strand at 538.954 kb on - strand at 538.966 kb on + strand at 538.966 kb on + strand at 538.966 kb on + strand at 538.967 kb on - strand at 538.980 kb on - strand at 538.980 kb on - strand at 539.010 kb on - strand at 539.342 kb on + strand, within ABIE40_RS02720 at 539.342 kb on + strand, within ABIE40_RS02720 at 539.343 kb on - strand, within ABIE40_RS02720 at 539.343 kb on - strand, within ABIE40_RS02720 at 539.406 kb on - strand, within ABIE40_RS02720 at 539.830 kb on + strand, within ABIE40_RS02725 at 539.830 kb on + strand, within ABIE40_RS02725 at 539.830 kb on + strand, within ABIE40_RS02725 at 539.831 kb on - strand, within ABIE40_RS02725 at 539.831 kb on - strand, within ABIE40_RS02725 at 539.831 kb on - strand, within ABIE40_RS02725 at 539.834 kb on + strand, within ABIE40_RS02725 at 539.834 kb on + strand, within ABIE40_RS02725 at 539.835 kb on - strand, within ABIE40_RS02725 at 539.835 kb on - strand, within ABIE40_RS02725 at 539.835 kb on - strand, within ABIE40_RS02725 at 539.835 kb on - strand, within ABIE40_RS02725 at 539.897 kb on + strand, within ABIE40_RS02725 at 539.897 kb on + strand, within ABIE40_RS02725 at 539.898 kb on - strand, within ABIE40_RS02725 at 539.898 kb on - strand, within ABIE40_RS02725 at 540.062 kb on + strand, within ABIE40_RS02725 at 540.063 kb on - strand, within ABIE40_RS02725 at 540.063 kb on - strand, within ABIE40_RS02725 at 540.101 kb on + strand, within ABIE40_RS02725 at 540.102 kb on - strand, within ABIE40_RS02725 at 540.107 kb on - strand, within ABIE40_RS02725 at 540.155 kb on + strand, within ABIE40_RS02725 at 540.155 kb on + strand, within ABIE40_RS02725 at 540.156 kb on - strand, within ABIE40_RS02725 at 540.156 kb on - strand, within ABIE40_RS02725 at 540.409 kb on + strand, within ABIE40_RS02725
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 538,888 + +0.4 538,888 + +1.2 538,888 + +0.4 538,889 - -0.8 538,889 - +1.3 538,889 - +0.2 538,953 + -0.3 538,954 - -1.1 538,966 + +0.6 538,966 + +1.3 538,966 + -0.4 538,967 - +2.8 538,980 - -0.1 538,980 - -1.0 539,010 - +1.4 539,342 + ABIE40_RS02720 0.74 -0.5 539,342 + ABIE40_RS02720 0.74 -2.0 539,343 - ABIE40_RS02720 0.74 -2.6 539,343 - ABIE40_RS02720 0.74 -1.2 539,406 - ABIE40_RS02720 0.88 -1.2 539,830 + ABIE40_RS02725 0.25 +0.2 539,830 + ABIE40_RS02725 0.25 -0.4 539,830 + ABIE40_RS02725 0.25 -1.6 539,831 - ABIE40_RS02725 0.25 +0.6 539,831 - ABIE40_RS02725 0.25 +0.1 539,831 - ABIE40_RS02725 0.25 +0.6 539,834 + ABIE40_RS02725 0.25 +0.0 539,834 + ABIE40_RS02725 0.25 +0.0 539,835 - ABIE40_RS02725 0.25 -0.4 539,835 - ABIE40_RS02725 0.25 +0.6 539,835 - ABIE40_RS02725 0.25 +0.9 539,835 - ABIE40_RS02725 0.25 +1.1 539,897 + ABIE40_RS02725 0.30 -0.4 539,897 + ABIE40_RS02725 0.30 -0.3 539,898 - ABIE40_RS02725 0.30 +1.3 539,898 - ABIE40_RS02725 0.30 +1.2 540,062 + ABIE40_RS02725 0.42 -1.5 540,063 - ABIE40_RS02725 0.43 -0.3 540,063 - ABIE40_RS02725 0.43 +0.9 540,101 + ABIE40_RS02725 0.45 -0.2 540,102 - ABIE40_RS02725 0.46 -1.1 540,107 - ABIE40_RS02725 0.46 +1.4 540,155 + ABIE40_RS02725 0.50 +0.9 540,155 + ABIE40_RS02725 0.50 -0.5 540,156 - ABIE40_RS02725 0.50 -0.7 540,156 - ABIE40_RS02725 0.50 +0.3 540,409 + ABIE40_RS02725 0.69 -0.9
Or see this region's nucleotide sequence