Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02240 and ABIE40_RS02245 are separated by 3 nucleotides ABIE40_RS02245 and ABIE40_RS02250 are separated by 195 nucleotides
ABIE40_RS02240: ABIE40_RS02240 - GntR family transcriptional regulator, at 442,897 to 443,793
_RS02240
ABIE40_RS02245: ABIE40_RS02245 - MDR family MFS transporter, at 443,797 to 445,287
_RS02245
ABIE40_RS02250: ABIE40_RS02250 - hypothetical protein, at 445,483 to 446,328
_RS02250
Position (kb) 443
444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 442.810 kb on + strand at 442.813 kb on + strand at 442.814 kb on - strand at 442.815 kb on + strand at 442.815 kb on + strand at 442.815 kb on + strand at 442.816 kb on - strand at 442.816 kb on - strand at 442.831 kb on + strand at 442.831 kb on + strand at 442.831 kb on + strand at 442.831 kb on + strand at 442.831 kb on + strand at 442.831 kb on + strand at 442.832 kb on - strand at 442.832 kb on - strand at 442.911 kb on + strand at 442.911 kb on + strand at 442.911 kb on + strand at 442.911 kb on + strand at 442.911 kb on + strand at 442.911 kb on + strand at 442.911 kb on + strand at 442.912 kb on - strand at 442.912 kb on - strand at 442.930 kb on + strand at 442.930 kb on + strand at 442.930 kb on + strand at 442.930 kb on + strand at 442.931 kb on - strand at 442.931 kb on - strand at 442.931 kb on - strand at 442.931 kb on - strand at 442.931 kb on - strand at 442.939 kb on + strand at 443.420 kb on - strand, within ABIE40_RS02240 at 443.497 kb on + strand, within ABIE40_RS02240 at 443.498 kb on - strand, within ABIE40_RS02240 at 443.579 kb on - strand, within ABIE40_RS02240 at 443.605 kb on + strand, within ABIE40_RS02240 at 443.606 kb on - strand, within ABIE40_RS02240 at 443.611 kb on + strand, within ABIE40_RS02240 at 443.612 kb on - strand, within ABIE40_RS02240 at 443.669 kb on + strand, within ABIE40_RS02240 at 443.674 kb on + strand, within ABIE40_RS02240 at 443.674 kb on + strand, within ABIE40_RS02240 at 443.676 kb on + strand, within ABIE40_RS02240 at 443.676 kb on + strand, within ABIE40_RS02240 at 443.676 kb on + strand, within ABIE40_RS02240 at 443.676 kb on + strand, within ABIE40_RS02240 at 443.677 kb on - strand, within ABIE40_RS02240 at 443.677 kb on - strand, within ABIE40_RS02240 at 443.677 kb on - strand, within ABIE40_RS02240 at 443.677 kb on - strand, within ABIE40_RS02240 at 443.798 kb on + strand at 443.798 kb on + strand at 443.798 kb on + strand at 443.798 kb on + strand at 443.799 kb on - strand at 443.799 kb on - strand at 443.799 kb on - strand at 443.799 kb on - strand at 444.010 kb on - strand, within ABIE40_RS02245 at 444.032 kb on + strand, within ABIE40_RS02245 at 444.032 kb on + strand, within ABIE40_RS02245 at 444.032 kb on + strand, within ABIE40_RS02245 at 444.032 kb on + strand, within ABIE40_RS02245 at 444.032 kb on + strand, within ABIE40_RS02245 at 444.032 kb on + strand, within ABIE40_RS02245 at 444.032 kb on + strand, within ABIE40_RS02245 at 444.033 kb on - strand, within ABIE40_RS02245 at 444.084 kb on + strand, within ABIE40_RS02245 at 444.084 kb on + strand, within ABIE40_RS02245 at 444.085 kb on - strand, within ABIE40_RS02245 at 444.085 kb on - strand, within ABIE40_RS02245 at 444.085 kb on - strand, within ABIE40_RS02245 at 444.418 kb on + strand, within ABIE40_RS02245 at 444.418 kb on + strand, within ABIE40_RS02245 at 444.430 kb on - strand, within ABIE40_RS02245 at 444.430 kb on - strand, within ABIE40_RS02245 at 444.430 kb on - strand, within ABIE40_RS02245 at 444.430 kb on - strand, within ABIE40_RS02245 at 444.431 kb on + strand, within ABIE40_RS02245 at 444.431 kb on + strand, within ABIE40_RS02245 at 444.431 kb on + strand, within ABIE40_RS02245 at 444.431 kb on + strand, within ABIE40_RS02245 at 444.432 kb on - strand, within ABIE40_RS02245 at 444.432 kb on - strand, within ABIE40_RS02245 at 444.489 kb on + strand, within ABIE40_RS02245 at 444.489 kb on + strand, within ABIE40_RS02245 at 444.489 kb on + strand, within ABIE40_RS02245 at 444.490 kb on - strand, within ABIE40_RS02245 at 444.490 kb on - strand, within ABIE40_RS02245 at 444.692 kb on + strand, within ABIE40_RS02245 at 444.693 kb on - strand, within ABIE40_RS02245 at 444.772 kb on + strand, within ABIE40_RS02245 at 444.773 kb on - strand, within ABIE40_RS02245 at 444.804 kb on + strand, within ABIE40_RS02245 at 444.804 kb on + strand, within ABIE40_RS02245 at 444.804 kb on + strand, within ABIE40_RS02245 at 444.804 kb on + strand, within ABIE40_RS02245 at 444.804 kb on + strand, within ABIE40_RS02245 at 444.804 kb on + strand, within ABIE40_RS02245 at 444.805 kb on - strand, within ABIE40_RS02245 at 444.805 kb on - strand, within ABIE40_RS02245 at 444.805 kb on - strand, within ABIE40_RS02245 at 445.074 kb on + strand, within ABIE40_RS02245 at 445.074 kb on + strand, within ABIE40_RS02245 at 445.075 kb on - strand, within ABIE40_RS02245 at 445.092 kb on - strand, within ABIE40_RS02245 at 445.092 kb on - strand, within ABIE40_RS02245 at 445.145 kb on + strand at 445.145 kb on + strand at 445.145 kb on + strand at 445.145 kb on + strand at 445.145 kb on + strand at 445.145 kb on + strand at 445.146 kb on - strand at 445.146 kb on - strand at 445.146 kb on - strand at 445.149 kb on - strand at 445.149 kb on - strand at 445.152 kb on + strand at 445.152 kb on + strand at 445.153 kb on - strand at 445.153 kb on - strand at 445.153 kb on - strand at 445.153 kb on - strand at 445.153 kb on - strand at 445.153 kb on - strand at 445.153 kb on - strand at 445.278 kb on + strand at 445.292 kb on + strand at 445.292 kb on + strand at 445.292 kb on + strand at 445.292 kb on + strand at 445.292 kb on + strand at 445.293 kb on - strand at 445.293 kb on - strand at 445.293 kb on - strand at 445.378 kb on + strand at 445.385 kb on + strand at 445.386 kb on - strand at 445.400 kb on + strand at 445.410 kb on + strand at 445.411 kb on - strand at 445.478 kb on + strand at 445.478 kb on + strand at 445.479 kb on - strand at 445.479 kb on - strand at 445.484 kb on + strand at 445.485 kb on - strand at 445.485 kb on - strand at 445.485 kb on - strand at 445.646 kb on + strand, within ABIE40_RS02250 at 445.646 kb on + strand, within ABIE40_RS02250 at 445.646 kb on + strand, within ABIE40_RS02250 at 445.646 kb on + strand, within ABIE40_RS02250 at 445.646 kb on + strand, within ABIE40_RS02250 at 445.646 kb on + strand, within ABIE40_RS02250 at 445.647 kb on - strand, within ABIE40_RS02250 at 445.676 kb on + strand, within ABIE40_RS02250 at 445.677 kb on - strand, within ABIE40_RS02250 at 445.731 kb on - strand, within ABIE40_RS02250 at 445.764 kb on + strand, within ABIE40_RS02250 at 445.764 kb on + strand, within ABIE40_RS02250 at 445.782 kb on - strand, within ABIE40_RS02250 at 445.805 kb on + strand, within ABIE40_RS02250 at 445.805 kb on + strand, within ABIE40_RS02250 at 445.806 kb on - strand, within ABIE40_RS02250 at 445.806 kb on - strand, within ABIE40_RS02250 at 445.806 kb on - strand, within ABIE40_RS02250 at 445.815 kb on - strand, within ABIE40_RS02250 at 445.859 kb on + strand, within ABIE40_RS02250 at 445.859 kb on + strand, within ABIE40_RS02250 at 445.859 kb on + strand, within ABIE40_RS02250 at 445.859 kb on + strand, within ABIE40_RS02250 at 445.860 kb on - strand, within ABIE40_RS02250 at 445.860 kb on - strand, within ABIE40_RS02250 at 445.860 kb on - strand, within ABIE40_RS02250 at 445.907 kb on + strand, within ABIE40_RS02250 at 445.923 kb on + strand, within ABIE40_RS02250 at 445.979 kb on + strand, within ABIE40_RS02250 at 445.979 kb on + strand, within ABIE40_RS02250 at 445.979 kb on + strand, within ABIE40_RS02250 at 445.979 kb on + strand, within ABIE40_RS02250 at 445.980 kb on - strand, within ABIE40_RS02250 at 445.980 kb on - strand, within ABIE40_RS02250 at 445.980 kb on - strand, within ABIE40_RS02250 at 446.000 kb on + strand, within ABIE40_RS02250 at 446.000 kb on + strand, within ABIE40_RS02250 at 446.000 kb on + strand, within ABIE40_RS02250 at 446.000 kb on + strand, within ABIE40_RS02250 at 446.000 kb on + strand, within ABIE40_RS02250 at 446.000 kb on + strand, within ABIE40_RS02250 at 446.001 kb on - strand, within ABIE40_RS02250 at 446.001 kb on - strand, within ABIE40_RS02250 at 446.001 kb on - strand, within ABIE40_RS02250 at 446.022 kb on + strand, within ABIE40_RS02250 at 446.051 kb on + strand, within ABIE40_RS02250 at 446.051 kb on + strand, within ABIE40_RS02250 at 446.051 kb on + strand, within ABIE40_RS02250 at 446.051 kb on + strand, within ABIE40_RS02250 at 446.052 kb on - strand, within ABIE40_RS02250 at 446.052 kb on - strand, within ABIE40_RS02250 at 446.052 kb on - strand, within ABIE40_RS02250 at 446.063 kb on + strand, within ABIE40_RS02250 at 446.196 kb on + strand, within ABIE40_RS02250 at 446.197 kb on - strand, within ABIE40_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 442,810 + +0.0 442,813 + +0.2 442,814 - +0.2 442,815 + +0.8 442,815 + -0.1 442,815 + -0.3 442,816 - -2.4 442,816 - +0.4 442,831 + +0.7 442,831 + +0.8 442,831 + -0.4 442,831 + +0.5 442,831 + +0.3 442,831 + -0.1 442,832 - -1.6 442,832 - +2.2 442,911 + -0.3 442,911 + -2.4 442,911 + -1.0 442,911 + -3.3 442,911 + +2.2 442,911 + +0.3 442,911 + +0.6 442,912 - -1.0 442,912 - -1.4 442,930 + +0.0 442,930 + -0.4 442,930 + -0.4 442,930 + +0.0 442,931 - -0.1 442,931 - -0.0 442,931 - -1.1 442,931 - +0.2 442,931 - -2.3 442,939 + -0.9 443,420 - ABIE40_RS02240 0.58 -2.1 443,497 + ABIE40_RS02240 0.67 -0.1 443,498 - ABIE40_RS02240 0.67 +1.2 443,579 - ABIE40_RS02240 0.76 -1.3 443,605 + ABIE40_RS02240 0.79 -0.6 443,606 - ABIE40_RS02240 0.79 -2.4 443,611 + ABIE40_RS02240 0.80 +0.4 443,612 - ABIE40_RS02240 0.80 -0.9 443,669 + ABIE40_RS02240 0.86 -1.1 443,674 + ABIE40_RS02240 0.87 -1.1 443,674 + ABIE40_RS02240 0.87 -0.5 443,676 + ABIE40_RS02240 0.87 -0.3 443,676 + ABIE40_RS02240 0.87 +0.8 443,676 + ABIE40_RS02240 0.87 -0.4 443,676 + ABIE40_RS02240 0.87 +1.6 443,677 - ABIE40_RS02240 0.87 -1.4 443,677 - ABIE40_RS02240 0.87 -2.6 443,677 - ABIE40_RS02240 0.87 +2.2 443,677 - ABIE40_RS02240 0.87 +0.2 443,798 + +0.2 443,798 + -0.8 443,798 + +3.5 443,798 + -1.0 443,799 - -2.0 443,799 - -0.7 443,799 - -1.1 443,799 - -1.1 444,010 - ABIE40_RS02245 0.14 -0.9 444,032 + ABIE40_RS02245 0.16 +1.2 444,032 + ABIE40_RS02245 0.16 -0.9 444,032 + ABIE40_RS02245 0.16 +0.1 444,032 + ABIE40_RS02245 0.16 +0.6 444,032 + ABIE40_RS02245 0.16 +0.8 444,032 + ABIE40_RS02245 0.16 -2.1 444,032 + ABIE40_RS02245 0.16 +1.2 444,033 - ABIE40_RS02245 0.16 +0.6 444,084 + ABIE40_RS02245 0.19 -0.9 444,084 + ABIE40_RS02245 0.19 -0.8 444,085 - ABIE40_RS02245 0.19 -0.7 444,085 - ABIE40_RS02245 0.19 +0.7 444,085 - ABIE40_RS02245 0.19 +0.4 444,418 + ABIE40_RS02245 0.42 -0.2 444,418 + ABIE40_RS02245 0.42 -0.0 444,430 - ABIE40_RS02245 0.42 -0.2 444,430 - ABIE40_RS02245 0.42 -0.2 444,430 - ABIE40_RS02245 0.42 +0.3 444,430 - ABIE40_RS02245 0.42 -0.0 444,431 + ABIE40_RS02245 0.43 -0.9 444,431 + ABIE40_RS02245 0.43 +0.4 444,431 + ABIE40_RS02245 0.43 +1.3 444,431 + ABIE40_RS02245 0.43 +1.2 444,432 - ABIE40_RS02245 0.43 +0.8 444,432 - ABIE40_RS02245 0.43 -0.3 444,489 + ABIE40_RS02245 0.46 +0.6 444,489 + ABIE40_RS02245 0.46 -1.7 444,489 + ABIE40_RS02245 0.46 -1.0 444,490 - ABIE40_RS02245 0.46 +0.4 444,490 - ABIE40_RS02245 0.46 +0.4 444,692 + ABIE40_RS02245 0.60 +0.7 444,693 - ABIE40_RS02245 0.60 -1.5 444,772 + ABIE40_RS02245 0.65 -0.2 444,773 - ABIE40_RS02245 0.65 -0.1 444,804 + ABIE40_RS02245 0.68 -0.8 444,804 + ABIE40_RS02245 0.68 -0.4 444,804 + ABIE40_RS02245 0.68 +1.2 444,804 + ABIE40_RS02245 0.68 +2.2 444,804 + ABIE40_RS02245 0.68 -1.8 444,804 + ABIE40_RS02245 0.68 -0.2 444,805 - ABIE40_RS02245 0.68 +0.3 444,805 - ABIE40_RS02245 0.68 +0.7 444,805 - ABIE40_RS02245 0.68 -0.6 445,074 + ABIE40_RS02245 0.86 -0.2 445,074 + ABIE40_RS02245 0.86 +0.4 445,075 - ABIE40_RS02245 0.86 -1.1 445,092 - ABIE40_RS02245 0.87 +0.5 445,092 - ABIE40_RS02245 0.87 -0.1 445,145 + +0.9 445,145 + +0.6 445,145 + -0.4 445,145 + +1.2 445,145 + -0.6 445,145 + +0.5 445,146 - -1.4 445,146 - -1.2 445,146 - -1.7 445,149 - +2.0 445,149 - -0.3 445,152 + +0.4 445,152 + +1.0 445,153 - +0.3 445,153 - -1.2 445,153 - +2.2 445,153 - +0.0 445,153 - +1.2 445,153 - +0.2 445,153 - -0.1 445,278 + +2.2 445,292 + +0.2 445,292 + +0.5 445,292 + +0.2 445,292 + +0.3 445,292 + -1.1 445,293 - +0.6 445,293 - -0.8 445,293 - +2.8 445,378 + +0.0 445,385 + +0.2 445,386 - -0.6 445,400 + -0.3 445,410 + +0.5 445,411 - +0.0 445,478 + -3.4 445,478 + +0.6 445,479 - +0.6 445,479 - +0.8 445,484 + -1.2 445,485 - -0.2 445,485 - -0.6 445,485 - +0.4 445,646 + ABIE40_RS02250 0.19 +1.6 445,646 + ABIE40_RS02250 0.19 -1.2 445,646 + ABIE40_RS02250 0.19 +0.9 445,646 + ABIE40_RS02250 0.19 -1.0 445,646 + ABIE40_RS02250 0.19 -0.2 445,646 + ABIE40_RS02250 0.19 -1.4 445,647 - ABIE40_RS02250 0.19 -0.6 445,676 + ABIE40_RS02250 0.23 +1.1 445,677 - ABIE40_RS02250 0.23 -0.0 445,731 - ABIE40_RS02250 0.29 +0.2 445,764 + ABIE40_RS02250 0.33 -1.7 445,764 + ABIE40_RS02250 0.33 -0.2 445,782 - ABIE40_RS02250 0.35 -0.2 445,805 + ABIE40_RS02250 0.38 -0.7 445,805 + ABIE40_RS02250 0.38 -0.6 445,806 - ABIE40_RS02250 0.38 +0.3 445,806 - ABIE40_RS02250 0.38 +0.1 445,806 - ABIE40_RS02250 0.38 +0.2 445,815 - ABIE40_RS02250 0.39 -0.0 445,859 + ABIE40_RS02250 0.44 -0.7 445,859 + ABIE40_RS02250 0.44 -0.1 445,859 + ABIE40_RS02250 0.44 -1.2 445,859 + ABIE40_RS02250 0.44 -2.7 445,860 - ABIE40_RS02250 0.45 +0.5 445,860 - ABIE40_RS02250 0.45 +0.1 445,860 - ABIE40_RS02250 0.45 +1.4 445,907 + ABIE40_RS02250 0.50 +0.9 445,923 + ABIE40_RS02250 0.52 -0.6 445,979 + ABIE40_RS02250 0.59 -0.0 445,979 + ABIE40_RS02250 0.59 -1.2 445,979 + ABIE40_RS02250 0.59 +0.2 445,979 + ABIE40_RS02250 0.59 -1.0 445,980 - ABIE40_RS02250 0.59 -0.9 445,980 - ABIE40_RS02250 0.59 -1.8 445,980 - ABIE40_RS02250 0.59 -0.9 446,000 + ABIE40_RS02250 0.61 -1.9 446,000 + ABIE40_RS02250 0.61 -0.8 446,000 + ABIE40_RS02250 0.61 +0.5 446,000 + ABIE40_RS02250 0.61 +0.0 446,000 + ABIE40_RS02250 0.61 +0.6 446,000 + ABIE40_RS02250 0.61 +0.1 446,001 - ABIE40_RS02250 0.61 -0.3 446,001 - ABIE40_RS02250 0.61 -1.6 446,001 - ABIE40_RS02250 0.61 +1.2 446,022 + ABIE40_RS02250 0.64 +0.6 446,051 + ABIE40_RS02250 0.67 +0.4 446,051 + ABIE40_RS02250 0.67 +0.2 446,051 + ABIE40_RS02250 0.67 +0.0 446,051 + ABIE40_RS02250 0.67 -0.5 446,052 - ABIE40_RS02250 0.67 -0.8 446,052 - ABIE40_RS02250 0.67 -1.2 446,052 - ABIE40_RS02250 0.67 +1.3 446,063 + ABIE40_RS02250 0.69 -2.2 446,196 + ABIE40_RS02250 0.84 -2.3 446,197 - ABIE40_RS02250 0.84 +0.3
Or see this region's nucleotide sequence