Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02195 and ABIE40_RS02200 are separated by 34 nucleotides ABIE40_RS02200 and ABIE40_RS02205 are separated by 6 nucleotides
ABIE40_RS02195: ABIE40_RS02195 - LysR family transcriptional regulator, at 432,727 to 433,938
_RS02195
ABIE40_RS02200: ABIE40_RS02200 - copper homeostasis protein CutC, at 433,973 to 434,695
_RS02200
ABIE40_RS02205: ABIE40_RS02205 - zinc-binding alcohol dehydrogenase family protein, at 434,702 to 435,721
_RS02205
Position (kb) 433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 433.210 kb on + strand, within ABIE40_RS02195 at 433.273 kb on + strand, within ABIE40_RS02195 at 433.274 kb on - strand, within ABIE40_RS02195 at 433.274 kb on - strand, within ABIE40_RS02195 at 433.274 kb on - strand, within ABIE40_RS02195 at 433.274 kb on - strand, within ABIE40_RS02195 at 433.641 kb on - strand, within ABIE40_RS02195 at 433.658 kb on + strand, within ABIE40_RS02195 at 433.658 kb on + strand, within ABIE40_RS02195 at 433.658 kb on + strand, within ABIE40_RS02195 at 433.658 kb on + strand, within ABIE40_RS02195 at 433.659 kb on - strand, within ABIE40_RS02195 at 433.659 kb on - strand, within ABIE40_RS02195 at 433.738 kb on + strand, within ABIE40_RS02195 at 433.739 kb on - strand, within ABIE40_RS02195 at 433.739 kb on - strand, within ABIE40_RS02195 at 433.796 kb on + strand, within ABIE40_RS02195 at 433.796 kb on + strand, within ABIE40_RS02195 at 433.796 kb on + strand, within ABIE40_RS02195 at 433.796 kb on + strand, within ABIE40_RS02195 at 433.797 kb on - strand, within ABIE40_RS02195 at 433.797 kb on - strand, within ABIE40_RS02195 at 433.797 kb on - strand, within ABIE40_RS02195 at 433.797 kb on - strand, within ABIE40_RS02195 at 433.797 kb on - strand, within ABIE40_RS02195 at 433.797 kb on - strand, within ABIE40_RS02195 at 433.797 kb on - strand, within ABIE40_RS02195 at 433.825 kb on + strand at 433.825 kb on + strand at 433.826 kb on - strand at 433.936 kb on + strand at 433.937 kb on - strand at 433.956 kb on + strand at 433.956 kb on + strand at 433.957 kb on - strand at 433.957 kb on - strand at 433.992 kb on + strand at 433.992 kb on + strand at 433.992 kb on + strand at 433.992 kb on + strand at 433.992 kb on + strand at 433.992 kb on + strand at 433.992 kb on + strand at 433.993 kb on - strand at 433.993 kb on - strand at 433.993 kb on - strand at 434.135 kb on + strand, within ABIE40_RS02200 at 434.135 kb on + strand, within ABIE40_RS02200 at 434.136 kb on - strand, within ABIE40_RS02200 at 434.136 kb on - strand, within ABIE40_RS02200 at 434.136 kb on - strand, within ABIE40_RS02200 at 434.650 kb on + strand at 434.650 kb on + strand at 434.650 kb on + strand at 434.650 kb on + strand at 434.650 kb on + strand at 434.651 kb on - strand at 435.013 kb on - strand, within ABIE40_RS02205 at 435.320 kb on + strand, within ABIE40_RS02205 at 435.321 kb on - strand, within ABIE40_RS02205 at 435.337 kb on - strand, within ABIE40_RS02205 at 435.337 kb on - strand, within ABIE40_RS02205 at 435.465 kb on + strand, within ABIE40_RS02205 at 435.465 kb on + strand, within ABIE40_RS02205 at 435.465 kb on + strand, within ABIE40_RS02205 at 435.465 kb on + strand, within ABIE40_RS02205 at 435.465 kb on + strand, within ABIE40_RS02205 at 435.465 kb on + strand, within ABIE40_RS02205 at 435.466 kb on - strand, within ABIE40_RS02205 at 435.597 kb on + strand, within ABIE40_RS02205 at 435.597 kb on + strand, within ABIE40_RS02205 at 435.597 kb on + strand, within ABIE40_RS02205 at 435.597 kb on + strand, within ABIE40_RS02205 at 435.598 kb on - strand, within ABIE40_RS02205 at 435.598 kb on - strand, within ABIE40_RS02205 at 435.598 kb on - strand, within ABIE40_RS02205 at 435.598 kb on - strand, within ABIE40_RS02205 at 435.598 kb on - strand, within ABIE40_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 433,210 + ABIE40_RS02195 0.40 -0.4 433,273 + ABIE40_RS02195 0.45 +0.8 433,274 - ABIE40_RS02195 0.45 -0.1 433,274 - ABIE40_RS02195 0.45 -0.6 433,274 - ABIE40_RS02195 0.45 -0.2 433,274 - ABIE40_RS02195 0.45 -1.2 433,641 - ABIE40_RS02195 0.75 -1.6 433,658 + ABIE40_RS02195 0.77 -1.8 433,658 + ABIE40_RS02195 0.77 -0.3 433,658 + ABIE40_RS02195 0.77 -1.0 433,658 + ABIE40_RS02195 0.77 +0.4 433,659 - ABIE40_RS02195 0.77 -1.5 433,659 - ABIE40_RS02195 0.77 -0.7 433,738 + ABIE40_RS02195 0.83 +0.6 433,739 - ABIE40_RS02195 0.83 -0.1 433,739 - ABIE40_RS02195 0.83 +0.9 433,796 + ABIE40_RS02195 0.88 +1.4 433,796 + ABIE40_RS02195 0.88 +0.7 433,796 + ABIE40_RS02195 0.88 -0.8 433,796 + ABIE40_RS02195 0.88 -1.4 433,797 - ABIE40_RS02195 0.88 +0.2 433,797 - ABIE40_RS02195 0.88 +1.1 433,797 - ABIE40_RS02195 0.88 +0.3 433,797 - ABIE40_RS02195 0.88 -0.7 433,797 - ABIE40_RS02195 0.88 -1.1 433,797 - ABIE40_RS02195 0.88 -0.1 433,797 - ABIE40_RS02195 0.88 -0.4 433,825 + -0.1 433,825 + +0.0 433,826 - -0.6 433,936 + -0.5 433,937 - -0.8 433,956 + +0.2 433,956 + -1.6 433,957 - -0.1 433,957 - -0.3 433,992 + -0.2 433,992 + +1.0 433,992 + +1.3 433,992 + +0.2 433,992 + -0.2 433,992 + -0.0 433,992 + -0.4 433,993 - +0.0 433,993 - +0.6 433,993 - -0.2 434,135 + ABIE40_RS02200 0.22 +1.0 434,135 + ABIE40_RS02200 0.22 +2.0 434,136 - ABIE40_RS02200 0.23 -0.1 434,136 - ABIE40_RS02200 0.23 +0.8 434,136 - ABIE40_RS02200 0.23 -0.2 434,650 + -2.5 434,650 + -0.4 434,650 + +0.0 434,650 + -1.2 434,650 + -0.9 434,651 - -0.6 435,013 - ABIE40_RS02205 0.30 +0.3 435,320 + ABIE40_RS02205 0.61 +1.4 435,321 - ABIE40_RS02205 0.61 -0.3 435,337 - ABIE40_RS02205 0.62 -0.2 435,337 - ABIE40_RS02205 0.62 +0.3 435,465 + ABIE40_RS02205 0.75 +0.3 435,465 + ABIE40_RS02205 0.75 +2.8 435,465 + ABIE40_RS02205 0.75 -0.3 435,465 + ABIE40_RS02205 0.75 +0.8 435,465 + ABIE40_RS02205 0.75 -0.8 435,465 + ABIE40_RS02205 0.75 +0.1 435,466 - ABIE40_RS02205 0.75 -0.7 435,597 + ABIE40_RS02205 0.88 -0.5 435,597 + ABIE40_RS02205 0.88 -0.2 435,597 + ABIE40_RS02205 0.88 -2.4 435,597 + ABIE40_RS02205 0.88 -0.8 435,598 - ABIE40_RS02205 0.88 -0.4 435,598 - ABIE40_RS02205 0.88 -0.1 435,598 - ABIE40_RS02205 0.88 +0.2 435,598 - ABIE40_RS02205 0.88 +0.9 435,598 - ABIE40_RS02205 0.88 -2.2
Or see this region's nucleotide sequence