Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01005 and ABIE40_RS01010 are separated by 227 nucleotides ABIE40_RS01010 and ABIE40_RS01015 overlap by 14 nucleotides ABIE40_RS01015 and ABIE40_RS01020 are separated by 66 nucleotides ABIE40_RS01020 and ABIE40_RS01025 are separated by 193 nucleotides ABIE40_RS01025 and ABIE40_RS01030 are separated by 3 nucleotides
ABIE40_RS01005: ABIE40_RS01005 - DUF2282 domain-containing protein, at 207,320 to 207,589
_RS01005
ABIE40_RS01010: ABIE40_RS01010 - sigma-70 family RNA polymerase sigma factor, at 207,817 to 208,383
_RS01010
ABIE40_RS01015: ABIE40_RS01015 - NrsF family protein, at 208,370 to 209,005
_RS01015
ABIE40_RS01020: ABIE40_RS01020 - tRNA-Leu, at 209,072 to 209,158
_RS01020
ABIE40_RS01025: ABIE40_RS01025 - BA14K family protein, at 209,352 to 209,774
_RS01025
ABIE40_RS01030: ABIE40_RS01030 - SelT/SelW/SelH family protein, at 209,778 to 210,071
_RS01030
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 207.409 kb on - strand, within ABIE40_RS01005 at 207.484 kb on - strand, within ABIE40_RS01005 at 207.484 kb on - strand, within ABIE40_RS01005 at 207.484 kb on - strand, within ABIE40_RS01005 at 207.484 kb on - strand, within ABIE40_RS01005 at 207.604 kb on - strand at 207.604 kb on - strand at 207.662 kb on + strand at 207.662 kb on + strand at 207.663 kb on - strand at 207.801 kb on + strand at 207.801 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.809 kb on + strand at 207.810 kb on - strand at 207.810 kb on - strand at 207.810 kb on - strand at 207.889 kb on + strand, within ABIE40_RS01010 at 207.889 kb on + strand, within ABIE40_RS01010 at 207.890 kb on - strand, within ABIE40_RS01010 at 207.890 kb on - strand, within ABIE40_RS01010 at 207.890 kb on - strand, within ABIE40_RS01010 at 208.200 kb on + strand, within ABIE40_RS01010 at 208.200 kb on + strand, within ABIE40_RS01010 at 208.200 kb on + strand, within ABIE40_RS01010 at 208.200 kb on + strand, within ABIE40_RS01010 at 208.200 kb on + strand, within ABIE40_RS01010 at 208.200 kb on + strand, within ABIE40_RS01010 at 208.200 kb on + strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.201 kb on - strand, within ABIE40_RS01010 at 208.352 kb on + strand at 208.352 kb on + strand at 208.353 kb on - strand at 208.354 kb on + strand at 208.800 kb on + strand, within ABIE40_RS01015 at 208.800 kb on + strand, within ABIE40_RS01015 at 208.801 kb on - strand, within ABIE40_RS01015 at 208.890 kb on - strand, within ABIE40_RS01015 at 208.937 kb on + strand, within ABIE40_RS01015 at 208.937 kb on + strand, within ABIE40_RS01015 at 208.992 kb on - strand at 208.992 kb on - strand at 208.992 kb on - strand at 209.017 kb on + strand at 209.017 kb on + strand at 209.048 kb on + strand at 209.049 kb on - strand at 209.049 kb on - strand at 209.322 kb on + strand at 209.323 kb on - strand at 209.323 kb on - strand at 209.323 kb on - strand at 209.325 kb on - strand at 209.326 kb on + strand at 209.326 kb on + strand at 209.326 kb on + strand at 209.326 kb on + strand at 209.326 kb on + strand at 209.327 kb on - strand at 209.327 kb on - strand at 209.327 kb on - strand at 209.327 kb on - strand at 209.462 kb on + strand, within ABIE40_RS01025 at 209.462 kb on + strand, within ABIE40_RS01025 at 209.462 kb on + strand, within ABIE40_RS01025 at 209.463 kb on - strand, within ABIE40_RS01025 at 209.476 kb on - strand, within ABIE40_RS01025 at 209.476 kb on - strand, within ABIE40_RS01025 at 209.476 kb on - strand, within ABIE40_RS01025 at 209.532 kb on + strand, within ABIE40_RS01025 at 209.532 kb on + strand, within ABIE40_RS01025 at 209.533 kb on - strand, within ABIE40_RS01025 at 209.547 kb on + strand, within ABIE40_RS01025 at 209.548 kb on - strand, within ABIE40_RS01025 at 209.577 kb on + strand, within ABIE40_RS01025 at 209.577 kb on + strand, within ABIE40_RS01025 at 209.577 kb on + strand, within ABIE40_RS01025 at 209.577 kb on + strand, within ABIE40_RS01025 at 209.577 kb on + strand, within ABIE40_RS01025 at 209.577 kb on + strand, within ABIE40_RS01025 at 209.577 kb on + strand, within ABIE40_RS01025 at 209.578 kb on - strand, within ABIE40_RS01025 at 209.578 kb on - strand, within ABIE40_RS01025 at 209.580 kb on + strand, within ABIE40_RS01025 at 209.581 kb on - strand, within ABIE40_RS01025 at 209.616 kb on + strand, within ABIE40_RS01025 at 209.617 kb on - strand, within ABIE40_RS01025 at 209.617 kb on - strand, within ABIE40_RS01025 at 209.617 kb on - strand, within ABIE40_RS01025 at 209.617 kb on - strand, within ABIE40_RS01025 at 209.617 kb on - strand, within ABIE40_RS01025 at 209.694 kb on + strand, within ABIE40_RS01025 at 209.695 kb on - strand, within ABIE40_RS01025 at 209.703 kb on + strand, within ABIE40_RS01025 at 209.703 kb on + strand, within ABIE40_RS01025 at 209.703 kb on + strand, within ABIE40_RS01025 at 209.703 kb on + strand, within ABIE40_RS01025 at 209.704 kb on - strand, within ABIE40_RS01025 at 209.704 kb on - strand, within ABIE40_RS01025 at 209.704 kb on - strand, within ABIE40_RS01025 at 209.705 kb on + strand, within ABIE40_RS01025 at 209.705 kb on + strand, within ABIE40_RS01025 at 209.733 kb on + strand at 209.733 kb on + strand at 209.733 kb on + strand at 209.733 kb on + strand at 209.733 kb on + strand at 209.734 kb on - strand at 209.745 kb on + strand at 209.746 kb on - strand at 209.746 kb on - strand at 209.746 kb on - strand at 209.746 kb on - strand at 209.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 207,409 - ABIE40_RS01005 0.33 +1.3 207,484 - ABIE40_RS01005 0.61 +0.6 207,484 - ABIE40_RS01005 0.61 +2.3 207,484 - ABIE40_RS01005 0.61 -2.0 207,484 - ABIE40_RS01005 0.61 +1.1 207,604 - -0.9 207,604 - -0.1 207,662 + +3.8 207,662 + -1.1 207,663 - -1.0 207,801 + -0.5 207,801 + -0.7 207,809 + -0.2 207,809 + -0.1 207,809 + -1.8 207,809 + +0.2 207,809 + +0.3 207,809 + -0.1 207,809 + -0.6 207,809 + -0.0 207,809 + -0.3 207,810 - +0.6 207,810 - -0.4 207,810 - +0.6 207,889 + ABIE40_RS01010 0.13 -0.1 207,889 + ABIE40_RS01010 0.13 -0.2 207,890 - ABIE40_RS01010 0.13 -0.1 207,890 - ABIE40_RS01010 0.13 -0.7 207,890 - ABIE40_RS01010 0.13 +0.7 208,200 + ABIE40_RS01010 0.68 -1.1 208,200 + ABIE40_RS01010 0.68 +0.3 208,200 + ABIE40_RS01010 0.68 +0.8 208,200 + ABIE40_RS01010 0.68 -0.0 208,200 + ABIE40_RS01010 0.68 -0.1 208,200 + ABIE40_RS01010 0.68 -0.2 208,200 + ABIE40_RS01010 0.68 -0.1 208,201 - ABIE40_RS01010 0.68 +0.9 208,201 - ABIE40_RS01010 0.68 +0.7 208,201 - ABIE40_RS01010 0.68 +0.8 208,201 - ABIE40_RS01010 0.68 +0.1 208,201 - ABIE40_RS01010 0.68 +0.0 208,201 - ABIE40_RS01010 0.68 +0.5 208,201 - ABIE40_RS01010 0.68 +0.2 208,201 - ABIE40_RS01010 0.68 -1.5 208,201 - ABIE40_RS01010 0.68 +0.3 208,201 - ABIE40_RS01010 0.68 +0.5 208,201 - ABIE40_RS01010 0.68 -0.1 208,201 - ABIE40_RS01010 0.68 +0.7 208,352 + +1.6 208,352 + -0.4 208,353 - -1.2 208,354 + -1.3 208,800 + ABIE40_RS01015 0.68 +0.7 208,800 + ABIE40_RS01015 0.68 -1.3 208,801 - ABIE40_RS01015 0.68 -1.6 208,890 - ABIE40_RS01015 0.82 -2.4 208,937 + ABIE40_RS01015 0.89 -2.3 208,937 + ABIE40_RS01015 0.89 -0.9 208,992 - -0.5 208,992 - +1.5 208,992 - +0.3 209,017 + -0.2 209,017 + -1.9 209,048 + -2.3 209,049 - -0.2 209,049 - -0.3 209,322 + +2.3 209,323 - -0.4 209,323 - -0.7 209,323 - +0.8 209,325 - +1.3 209,326 + -0.6 209,326 + -0.3 209,326 + -0.0 209,326 + +0.5 209,326 + +0.6 209,327 - -2.3 209,327 - -0.3 209,327 - +0.5 209,327 - +0.7 209,462 + ABIE40_RS01025 0.26 -2.6 209,462 + ABIE40_RS01025 0.26 +0.7 209,462 + ABIE40_RS01025 0.26 +0.1 209,463 - ABIE40_RS01025 0.26 -0.2 209,476 - ABIE40_RS01025 0.29 -0.6 209,476 - ABIE40_RS01025 0.29 -0.6 209,476 - ABIE40_RS01025 0.29 -0.1 209,532 + ABIE40_RS01025 0.43 +0.7 209,532 + ABIE40_RS01025 0.43 -3.1 209,533 - ABIE40_RS01025 0.43 -0.4 209,547 + ABIE40_RS01025 0.46 -0.5 209,548 - ABIE40_RS01025 0.46 -0.3 209,577 + ABIE40_RS01025 0.53 -1.6 209,577 + ABIE40_RS01025 0.53 -0.6 209,577 + ABIE40_RS01025 0.53 -0.4 209,577 + ABIE40_RS01025 0.53 +0.1 209,577 + ABIE40_RS01025 0.53 -0.5 209,577 + ABIE40_RS01025 0.53 -0.7 209,577 + ABIE40_RS01025 0.53 -0.8 209,578 - ABIE40_RS01025 0.53 -0.7 209,578 - ABIE40_RS01025 0.53 -0.1 209,580 + ABIE40_RS01025 0.54 -1.8 209,581 - ABIE40_RS01025 0.54 +0.3 209,616 + ABIE40_RS01025 0.62 -1.0 209,617 - ABIE40_RS01025 0.63 +0.1 209,617 - ABIE40_RS01025 0.63 +0.0 209,617 - ABIE40_RS01025 0.63 +0.2 209,617 - ABIE40_RS01025 0.63 +0.5 209,617 - ABIE40_RS01025 0.63 -0.2 209,694 + ABIE40_RS01025 0.81 -1.2 209,695 - ABIE40_RS01025 0.81 -0.5 209,703 + ABIE40_RS01025 0.83 -1.7 209,703 + ABIE40_RS01025 0.83 +0.5 209,703 + ABIE40_RS01025 0.83 -0.5 209,703 + ABIE40_RS01025 0.83 -0.7 209,704 - ABIE40_RS01025 0.83 -0.5 209,704 - ABIE40_RS01025 0.83 +1.7 209,704 - ABIE40_RS01025 0.83 -1.2 209,705 + ABIE40_RS01025 0.83 +0.1 209,705 + ABIE40_RS01025 0.83 +0.8 209,733 + +0.6 209,733 + -0.1 209,733 + -0.1 209,733 + -0.4 209,733 + -0.1 209,734 - +1.8 209,745 + +0.9 209,746 - +0.2 209,746 - +0.2 209,746 - -1.8 209,746 - -0.1 209,805 - +0.3
Or see this region's nucleotide sequence