Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00800 and ABIE40_RS00805 overlap by 4 nucleotides ABIE40_RS00805 and ABIE40_RS00810 overlap by 8 nucleotides ABIE40_RS00810 and ABIE40_RS00815 are separated by 2 nucleotides
ABIE40_RS00800: ABIE40_RS00800 - cytidine deaminase, at 167,447 to 167,836
_RS00800
ABIE40_RS00805: ABIE40_RS00805 - purine-nucleoside phosphorylase, at 167,833 to 168,642
_RS00805
ABIE40_RS00810: ABIE40_RS00810 - deoxyribose-phosphate aldolase, at 168,635 to 169,411
_RS00810
ABIE40_RS00815: ABIE40_RS00815 - thymidine phosphorylase, at 169,414 to 170,721
_RS00815
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.753 kb on + strand, within ABIE40_RS00800 at 167.753 kb on + strand, within ABIE40_RS00800 at 167.753 kb on + strand, within ABIE40_RS00800 at 167.753 kb on + strand, within ABIE40_RS00800 at 167.754 kb on - strand, within ABIE40_RS00800 at 167.754 kb on - strand, within ABIE40_RS00800 at 167.956 kb on + strand, within ABIE40_RS00805 at 167.956 kb on + strand, within ABIE40_RS00805 at 168.035 kb on + strand, within ABIE40_RS00805 at 168.070 kb on + strand, within ABIE40_RS00805 at 168.215 kb on + strand, within ABIE40_RS00805 at 168.216 kb on - strand, within ABIE40_RS00805 at 168.216 kb on - strand, within ABIE40_RS00805 at 168.220 kb on + strand, within ABIE40_RS00805 at 168.220 kb on + strand, within ABIE40_RS00805 at 168.220 kb on + strand, within ABIE40_RS00805 at 168.221 kb on - strand, within ABIE40_RS00805 at 168.279 kb on + strand, within ABIE40_RS00805 at 168.279 kb on + strand, within ABIE40_RS00805 at 168.279 kb on + strand, within ABIE40_RS00805 at 168.279 kb on + strand, within ABIE40_RS00805 at 168.280 kb on - strand, within ABIE40_RS00805 at 168.280 kb on - strand, within ABIE40_RS00805 at 168.286 kb on + strand, within ABIE40_RS00805 at 168.286 kb on + strand, within ABIE40_RS00805 at 168.287 kb on - strand, within ABIE40_RS00805 at 168.287 kb on - strand, within ABIE40_RS00805 at 168.344 kb on + strand, within ABIE40_RS00805 at 168.358 kb on + strand, within ABIE40_RS00805 at 168.358 kb on + strand, within ABIE40_RS00805 at 168.358 kb on + strand, within ABIE40_RS00805 at 168.358 kb on + strand, within ABIE40_RS00805 at 168.358 kb on - strand, within ABIE40_RS00805 at 168.359 kb on - strand, within ABIE40_RS00805 at 168.359 kb on - strand, within ABIE40_RS00805 at 168.359 kb on - strand, within ABIE40_RS00805 at 168.359 kb on - strand, within ABIE40_RS00805 at 168.359 kb on - strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.360 kb on + strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.361 kb on - strand, within ABIE40_RS00805 at 168.503 kb on + strand, within ABIE40_RS00805 at 168.503 kb on + strand, within ABIE40_RS00805 at 168.515 kb on - strand, within ABIE40_RS00805 at 168.640 kb on + strand at 168.640 kb on + strand at 168.640 kb on + strand at 168.641 kb on - strand at 168.641 kb on - strand at 169.082 kb on - strand, within ABIE40_RS00810 at 169.167 kb on + strand, within ABIE40_RS00810 at 169.167 kb on + strand, within ABIE40_RS00810 at 169.181 kb on - strand, within ABIE40_RS00810 at 169.269 kb on - strand, within ABIE40_RS00810 at 169.269 kb on - strand, within ABIE40_RS00810 at 169.406 kb on + strand at 169.406 kb on + strand at 169.407 kb on - strand at 169.614 kb on + strand, within ABIE40_RS00815 at 169.614 kb on + strand, within ABIE40_RS00815 at 169.614 kb on + strand, within ABIE40_RS00815 at 169.762 kb on - strand, within ABIE40_RS00815 at 169.793 kb on + strand, within ABIE40_RS00815 at 169.801 kb on + strand, within ABIE40_RS00815 at 169.883 kb on + strand, within ABIE40_RS00815 at 169.883 kb on + strand, within ABIE40_RS00815 at 169.884 kb on - strand, within ABIE40_RS00815 at 169.906 kb on + strand, within ABIE40_RS00815 at 170.127 kb on + strand, within ABIE40_RS00815 at 170.127 kb on + strand, within ABIE40_RS00815 at 170.128 kb on - strand, within ABIE40_RS00815 at 170.157 kb on + strand, within ABIE40_RS00815 at 170.158 kb on - strand, within ABIE40_RS00815 at 170.212 kb on - strand, within ABIE40_RS00815 at 170.212 kb on - strand, within ABIE40_RS00815 at 170.297 kb on + strand, within ABIE40_RS00815 at 170.354 kb on + strand, within ABIE40_RS00815 at 170.354 kb on + strand, within ABIE40_RS00815 at 170.354 kb on + strand, within ABIE40_RS00815 at 170.354 kb on + strand, within ABIE40_RS00815 at 170.354 kb on + strand, within ABIE40_RS00815 at 170.354 kb on + strand, within ABIE40_RS00815 at 170.354 kb on + strand, within ABIE40_RS00815 at 170.355 kb on - strand, within ABIE40_RS00815 at 170.355 kb on - strand, within ABIE40_RS00815 at 170.355 kb on - strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.358 kb on + strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.359 kb on - strand, within ABIE40_RS00815 at 170.401 kb on + strand, within ABIE40_RS00815 at 170.401 kb on + strand, within ABIE40_RS00815 at 170.402 kb on - strand, within ABIE40_RS00815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 167,753 + ABIE40_RS00800 0.78 -0.3 167,753 + ABIE40_RS00800 0.78 +1.3 167,753 + ABIE40_RS00800 0.78 -0.6 167,753 + ABIE40_RS00800 0.78 -1.1 167,754 - ABIE40_RS00800 0.79 -0.5 167,754 - ABIE40_RS00800 0.79 +0.7 167,956 + ABIE40_RS00805 0.15 -0.4 167,956 + ABIE40_RS00805 0.15 +0.7 168,035 + ABIE40_RS00805 0.25 -1.2 168,070 + ABIE40_RS00805 0.29 +1.0 168,215 + ABIE40_RS00805 0.47 -1.9 168,216 - ABIE40_RS00805 0.47 -0.5 168,216 - ABIE40_RS00805 0.47 -0.3 168,220 + ABIE40_RS00805 0.48 +1.0 168,220 + ABIE40_RS00805 0.48 -1.2 168,220 + ABIE40_RS00805 0.48 -1.0 168,221 - ABIE40_RS00805 0.48 -1.1 168,279 + ABIE40_RS00805 0.55 +1.8 168,279 + ABIE40_RS00805 0.55 -2.2 168,279 + ABIE40_RS00805 0.55 +3.0 168,279 + ABIE40_RS00805 0.55 -0.3 168,280 - ABIE40_RS00805 0.55 +2.3 168,280 - ABIE40_RS00805 0.55 -0.1 168,286 + ABIE40_RS00805 0.56 +0.3 168,286 + ABIE40_RS00805 0.56 +0.6 168,287 - ABIE40_RS00805 0.56 -0.5 168,287 - ABIE40_RS00805 0.56 -0.8 168,344 + ABIE40_RS00805 0.63 -0.2 168,358 + ABIE40_RS00805 0.65 -0.2 168,358 + ABIE40_RS00805 0.65 +0.0 168,358 + ABIE40_RS00805 0.65 -0.9 168,358 + ABIE40_RS00805 0.65 +1.0 168,358 - ABIE40_RS00805 0.65 -0.3 168,359 - ABIE40_RS00805 0.65 +0.2 168,359 - ABIE40_RS00805 0.65 +1.0 168,359 - ABIE40_RS00805 0.65 -1.2 168,359 - ABIE40_RS00805 0.65 +0.3 168,359 - ABIE40_RS00805 0.65 -0.3 168,360 + ABIE40_RS00805 0.65 +0.2 168,360 + ABIE40_RS00805 0.65 +0.0 168,360 + ABIE40_RS00805 0.65 -1.0 168,360 + ABIE40_RS00805 0.65 -0.1 168,360 + ABIE40_RS00805 0.65 +0.5 168,360 + ABIE40_RS00805 0.65 +0.9 168,360 + ABIE40_RS00805 0.65 +0.6 168,360 + ABIE40_RS00805 0.65 -0.4 168,361 - ABIE40_RS00805 0.65 +1.5 168,361 - ABIE40_RS00805 0.65 -0.3 168,361 - ABIE40_RS00805 0.65 -0.3 168,361 - ABIE40_RS00805 0.65 -0.3 168,361 - ABIE40_RS00805 0.65 -0.7 168,361 - ABIE40_RS00805 0.65 -0.4 168,361 - ABIE40_RS00805 0.65 +0.3 168,361 - ABIE40_RS00805 0.65 -0.2 168,361 - ABIE40_RS00805 0.65 +0.8 168,361 - ABIE40_RS00805 0.65 -2.2 168,361 - ABIE40_RS00805 0.65 -0.8 168,361 - ABIE40_RS00805 0.65 +0.7 168,361 - ABIE40_RS00805 0.65 -1.6 168,503 + ABIE40_RS00805 0.83 -0.4 168,503 + ABIE40_RS00805 0.83 -0.4 168,515 - ABIE40_RS00805 0.84 -0.7 168,640 + -1.1 168,640 + -1.2 168,640 + +0.8 168,641 - +0.3 168,641 - -1.7 169,082 - ABIE40_RS00810 0.58 -0.3 169,167 + ABIE40_RS00810 0.68 +1.4 169,167 + ABIE40_RS00810 0.68 +1.3 169,181 - ABIE40_RS00810 0.70 +0.8 169,269 - ABIE40_RS00810 0.82 +1.3 169,269 - ABIE40_RS00810 0.82 +0.6 169,406 + -0.2 169,406 + -0.2 169,407 - -0.4 169,614 + ABIE40_RS00815 0.15 +0.7 169,614 + ABIE40_RS00815 0.15 +2.3 169,614 + ABIE40_RS00815 0.15 -1.1 169,762 - ABIE40_RS00815 0.27 -0.6 169,793 + ABIE40_RS00815 0.29 +0.3 169,801 + ABIE40_RS00815 0.30 -0.7 169,883 + ABIE40_RS00815 0.36 -1.1 169,883 + ABIE40_RS00815 0.36 -1.6 169,884 - ABIE40_RS00815 0.36 -1.3 169,906 + ABIE40_RS00815 0.38 -2.0 170,127 + ABIE40_RS00815 0.55 -0.6 170,127 + ABIE40_RS00815 0.55 -0.3 170,128 - ABIE40_RS00815 0.55 +1.4 170,157 + ABIE40_RS00815 0.57 -0.4 170,158 - ABIE40_RS00815 0.57 +0.2 170,212 - ABIE40_RS00815 0.61 +0.5 170,212 - ABIE40_RS00815 0.61 +0.2 170,297 + ABIE40_RS00815 0.68 +0.8 170,354 + ABIE40_RS00815 0.72 -2.3 170,354 + ABIE40_RS00815 0.72 +0.1 170,354 + ABIE40_RS00815 0.72 -0.0 170,354 + ABIE40_RS00815 0.72 -0.9 170,354 + ABIE40_RS00815 0.72 -0.5 170,354 + ABIE40_RS00815 0.72 -0.6 170,354 + ABIE40_RS00815 0.72 -0.9 170,355 - ABIE40_RS00815 0.72 +1.3 170,355 - ABIE40_RS00815 0.72 -0.3 170,355 - ABIE40_RS00815 0.72 -2.1 170,358 + ABIE40_RS00815 0.72 +1.0 170,358 + ABIE40_RS00815 0.72 -0.8 170,358 + ABIE40_RS00815 0.72 -1.0 170,358 + ABIE40_RS00815 0.72 +0.2 170,358 + ABIE40_RS00815 0.72 +0.5 170,358 + ABIE40_RS00815 0.72 -1.1 170,358 + ABIE40_RS00815 0.72 +1.0 170,358 + ABIE40_RS00815 0.72 +0.3 170,358 + ABIE40_RS00815 0.72 -0.3 170,358 + ABIE40_RS00815 0.72 +0.1 170,358 + ABIE40_RS00815 0.72 -0.5 170,358 + ABIE40_RS00815 0.72 +1.2 170,358 + ABIE40_RS00815 0.72 +0.1 170,358 + ABIE40_RS00815 0.72 -0.1 170,358 + ABIE40_RS00815 0.72 -0.7 170,359 - ABIE40_RS00815 0.72 -0.1 170,359 - ABIE40_RS00815 0.72 -0.9 170,359 - ABIE40_RS00815 0.72 -1.0 170,359 - ABIE40_RS00815 0.72 -2.9 170,359 - ABIE40_RS00815 0.72 -2.0 170,359 - ABIE40_RS00815 0.72 -0.1 170,359 - ABIE40_RS00815 0.72 +0.6 170,359 - ABIE40_RS00815 0.72 -0.7 170,359 - ABIE40_RS00815 0.72 -0.6 170,359 - ABIE40_RS00815 0.72 -1.4 170,359 - ABIE40_RS00815 0.72 -0.3 170,359 - ABIE40_RS00815 0.72 +1.5 170,359 - ABIE40_RS00815 0.72 +2.3 170,359 - ABIE40_RS00815 0.72 -0.4 170,359 - ABIE40_RS00815 0.72 -0.1 170,401 + ABIE40_RS00815 0.75 -0.2 170,401 + ABIE40_RS00815 0.75 +0.5 170,402 - ABIE40_RS00815 0.76 +0.3
Or see this region's nucleotide sequence