Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00400 and ABIE40_RS00405 are separated by 3 nucleotides ABIE40_RS00405 and ABIE40_RS00410 are separated by 154 nucleotides ABIE40_RS00410 and ABIE40_RS00415 are separated by 180 nucleotides ABIE40_RS00415 and ABIE40_RS00420 overlap by 4 nucleotides
ABIE40_RS00400: ABIE40_RS00400 - hypothetical protein, at 80,255 to 80,725
_RS00400
ABIE40_RS00405: ABIE40_RS00405 - YdcF family protein, at 80,729 to 81,517
_RS00405
ABIE40_RS00410: ABIE40_RS00410 - hypothetical protein, at 81,672 to 81,872
_RS00410
ABIE40_RS00415: ABIE40_RS00415 - helix-turn-helix transcriptional regulator, at 82,053 to 82,856
_RS00415
ABIE40_RS00420: ABIE40_RS00420 - hypothetical protein, at 82,853 to 83,071
_RS00420
Position (kb) 81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 80.723 kb on + strand at 80.723 kb on + strand at 80.723 kb on + strand at 80.730 kb on + strand at 80.731 kb on - strand at 80.731 kb on - strand at 80.739 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.766 kb on + strand at 80.767 kb on - strand at 80.767 kb on - strand at 80.767 kb on - strand at 80.767 kb on - strand at 80.769 kb on + strand at 80.944 kb on - strand, within ABIE40_RS00405 at 81.001 kb on + strand, within ABIE40_RS00405 at 81.001 kb on + strand, within ABIE40_RS00405 at 81.002 kb on - strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.111 kb on + strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.112 kb on - strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.342 kb on + strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.343 kb on - strand, within ABIE40_RS00405 at 81.360 kb on + strand, within ABIE40_RS00405 at 81.360 kb on + strand, within ABIE40_RS00405 at 81.361 kb on - strand, within ABIE40_RS00405 at 81.552 kb on + strand at 81.553 kb on - strand at 81.553 kb on - strand at 81.553 kb on - strand at 81.610 kb on + strand at 81.610 kb on + strand at 81.762 kb on - strand, within ABIE40_RS00410 at 81.795 kb on + strand, within ABIE40_RS00410 at 81.795 kb on + strand, within ABIE40_RS00410 at 81.796 kb on - strand, within ABIE40_RS00410 at 81.927 kb on + strand at 81.928 kb on - strand at 81.931 kb on + strand at 81.932 kb on - strand at 81.938 kb on - strand at 81.980 kb on + strand at 81.980 kb on + strand at 81.992 kb on + strand at 81.992 kb on + strand at 81.993 kb on - strand at 81.993 kb on - strand at 82.012 kb on + strand at 82.012 kb on + strand at 82.012 kb on + strand at 82.013 kb on - strand at 82.221 kb on + strand, within ABIE40_RS00415 at 82.248 kb on + strand, within ABIE40_RS00415 at 82.248 kb on + strand, within ABIE40_RS00415 at 82.249 kb on - strand, within ABIE40_RS00415 at 82.249 kb on - strand, within ABIE40_RS00415 at 82.249 kb on - strand, within ABIE40_RS00415 at 82.376 kb on - strand, within ABIE40_RS00415 at 82.376 kb on - strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.377 kb on + strand, within ABIE40_RS00415 at 82.378 kb on - strand, within ABIE40_RS00415 at 82.378 kb on - strand, within ABIE40_RS00415 at 82.378 kb on - strand, within ABIE40_RS00415 at 82.378 kb on - strand, within ABIE40_RS00415 at 82.378 kb on - strand, within ABIE40_RS00415 at 82.378 kb on - strand, within ABIE40_RS00415 at 82.378 kb on - strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.386 kb on + strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.387 kb on - strand, within ABIE40_RS00415 at 82.388 kb on + strand, within ABIE40_RS00415 at 82.388 kb on + strand, within ABIE40_RS00415 at 82.388 kb on + strand, within ABIE40_RS00415 at 82.388 kb on + strand, within ABIE40_RS00415 at 82.388 kb on + strand, within ABIE40_RS00415 at 82.388 kb on + strand, within ABIE40_RS00415 at 82.389 kb on - strand, within ABIE40_RS00415 at 82.389 kb on - strand, within ABIE40_RS00415 at 82.389 kb on - strand, within ABIE40_RS00415 at 82.389 kb on - strand, within ABIE40_RS00415 at 82.389 kb on - strand, within ABIE40_RS00415 at 82.460 kb on + strand, within ABIE40_RS00415 at 82.589 kb on + strand, within ABIE40_RS00415 at 82.616 kb on + strand, within ABIE40_RS00415 at 82.616 kb on + strand, within ABIE40_RS00415 at 82.616 kb on + strand, within ABIE40_RS00415 at 82.616 kb on + strand, within ABIE40_RS00415 at 82.616 kb on + strand, within ABIE40_RS00415 at 82.616 kb on + strand, within ABIE40_RS00415 at 82.616 kb on + strand, within ABIE40_RS00415 at 82.617 kb on - strand, within ABIE40_RS00415 at 82.617 kb on - strand, within ABIE40_RS00415 at 82.617 kb on - strand, within ABIE40_RS00415 at 82.758 kb on + strand, within ABIE40_RS00415 at 82.799 kb on + strand at 82.799 kb on + strand at 82.799 kb on + strand at 82.799 kb on + strand at 82.800 kb on - strand at 82.800 kb on - strand at 82.800 kb on - strand at 82.800 kb on - strand at 82.854 kb on + strand at 82.854 kb on + strand at 82.854 kb on + strand at 82.854 kb on + strand at 82.855 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 80,723 + +1.3 80,723 + +2.3 80,723 + +1.1 80,730 + -0.6 80,731 - +0.2 80,731 - -0.2 80,739 + +0.4 80,766 + -0.7 80,766 + -0.6 80,766 + -0.7 80,766 + +1.9 80,766 + +0.8 80,767 - +0.3 80,767 - +0.8 80,767 - -0.2 80,767 - +1.1 80,769 + -1.2 80,944 - ABIE40_RS00405 0.27 +1.7 81,001 + ABIE40_RS00405 0.34 -2.3 81,001 + ABIE40_RS00405 0.34 -0.9 81,002 - ABIE40_RS00405 0.35 -2.2 81,111 + ABIE40_RS00405 0.48 -0.6 81,111 + ABIE40_RS00405 0.48 -0.2 81,111 + ABIE40_RS00405 0.48 +0.2 81,111 + ABIE40_RS00405 0.48 +1.1 81,111 + ABIE40_RS00405 0.48 -0.4 81,111 + ABIE40_RS00405 0.48 +0.2 81,111 + ABIE40_RS00405 0.48 -1.6 81,111 + ABIE40_RS00405 0.48 -0.6 81,111 + ABIE40_RS00405 0.48 +1.7 81,111 + ABIE40_RS00405 0.48 -1.1 81,111 + ABIE40_RS00405 0.48 +0.1 81,111 + ABIE40_RS00405 0.48 +0.7 81,112 - ABIE40_RS00405 0.49 -0.6 81,112 - ABIE40_RS00405 0.49 -0.3 81,112 - ABIE40_RS00405 0.49 -0.9 81,112 - ABIE40_RS00405 0.49 +2.1 81,112 - ABIE40_RS00405 0.49 +0.3 81,112 - ABIE40_RS00405 0.49 -0.1 81,112 - ABIE40_RS00405 0.49 +0.4 81,112 - ABIE40_RS00405 0.49 +0.7 81,112 - ABIE40_RS00405 0.49 +0.2 81,112 - ABIE40_RS00405 0.49 -0.1 81,112 - ABIE40_RS00405 0.49 -0.9 81,112 - ABIE40_RS00405 0.49 -0.4 81,112 - ABIE40_RS00405 0.49 +1.6 81,112 - ABIE40_RS00405 0.49 +1.1 81,112 - ABIE40_RS00405 0.49 +0.3 81,342 + ABIE40_RS00405 0.78 +0.9 81,342 + ABIE40_RS00405 0.78 +0.3 81,342 + ABIE40_RS00405 0.78 -0.4 81,342 + ABIE40_RS00405 0.78 -0.4 81,342 + ABIE40_RS00405 0.78 -0.4 81,342 + ABIE40_RS00405 0.78 +0.1 81,342 + ABIE40_RS00405 0.78 +0.3 81,342 + ABIE40_RS00405 0.78 -0.1 81,342 + ABIE40_RS00405 0.78 +0.8 81,343 - ABIE40_RS00405 0.78 +0.7 81,343 - ABIE40_RS00405 0.78 +0.3 81,343 - ABIE40_RS00405 0.78 +0.3 81,343 - ABIE40_RS00405 0.78 -2.1 81,343 - ABIE40_RS00405 0.78 +0.6 81,343 - ABIE40_RS00405 0.78 +0.2 81,343 - ABIE40_RS00405 0.78 -1.2 81,343 - ABIE40_RS00405 0.78 -1.2 81,343 - ABIE40_RS00405 0.78 -0.6 81,360 + ABIE40_RS00405 0.80 -0.3 81,360 + ABIE40_RS00405 0.80 -0.9 81,361 - ABIE40_RS00405 0.80 +0.1 81,552 + +0.2 81,553 - -0.6 81,553 - -0.2 81,553 - -0.5 81,610 + -0.7 81,610 + -0.7 81,762 - ABIE40_RS00410 0.45 -1.7 81,795 + ABIE40_RS00410 0.61 -2.9 81,795 + ABIE40_RS00410 0.61 +0.1 81,796 - ABIE40_RS00410 0.62 -0.9 81,927 + -0.4 81,928 - -3.0 81,931 + -0.1 81,932 - -2.5 81,938 - -2.0 81,980 + +0.3 81,980 + -0.3 81,992 + -0.4 81,992 + +1.7 81,993 - -0.3 81,993 - +1.3 82,012 + -1.1 82,012 + +0.6 82,012 + +0.9 82,013 - -0.2 82,221 + ABIE40_RS00415 0.21 -2.2 82,248 + ABIE40_RS00415 0.24 -1.2 82,248 + ABIE40_RS00415 0.24 -0.2 82,249 - ABIE40_RS00415 0.24 -1.2 82,249 - ABIE40_RS00415 0.24 -0.2 82,249 - ABIE40_RS00415 0.24 -2.2 82,376 - ABIE40_RS00415 0.40 -1.6 82,376 - ABIE40_RS00415 0.40 -0.7 82,377 + ABIE40_RS00415 0.40 -0.6 82,377 + ABIE40_RS00415 0.40 -0.1 82,377 + ABIE40_RS00415 0.40 -0.9 82,377 + ABIE40_RS00415 0.40 -0.7 82,377 + ABIE40_RS00415 0.40 -0.7 82,377 + ABIE40_RS00415 0.40 -0.1 82,377 + ABIE40_RS00415 0.40 -0.3 82,377 + ABIE40_RS00415 0.40 -0.9 82,377 + ABIE40_RS00415 0.40 -1.7 82,377 + ABIE40_RS00415 0.40 -0.5 82,377 + ABIE40_RS00415 0.40 -0.4 82,377 + ABIE40_RS00415 0.40 +0.7 82,378 - ABIE40_RS00415 0.40 +1.1 82,378 - ABIE40_RS00415 0.40 -0.6 82,378 - ABIE40_RS00415 0.40 +0.7 82,378 - ABIE40_RS00415 0.40 -0.8 82,378 - ABIE40_RS00415 0.40 -0.9 82,378 - ABIE40_RS00415 0.40 -0.6 82,378 - ABIE40_RS00415 0.40 -0.7 82,386 + ABIE40_RS00415 0.41 -0.6 82,386 + ABIE40_RS00415 0.41 -0.4 82,386 + ABIE40_RS00415 0.41 +1.4 82,386 + ABIE40_RS00415 0.41 +0.3 82,386 + ABIE40_RS00415 0.41 -0.8 82,386 + ABIE40_RS00415 0.41 -2.3 82,386 + ABIE40_RS00415 0.41 -0.4 82,386 + ABIE40_RS00415 0.41 -0.1 82,386 + ABIE40_RS00415 0.41 -2.3 82,387 - ABIE40_RS00415 0.42 -0.6 82,387 - ABIE40_RS00415 0.42 -0.3 82,387 - ABIE40_RS00415 0.42 -0.5 82,387 - ABIE40_RS00415 0.42 +0.7 82,387 - ABIE40_RS00415 0.42 -0.2 82,387 - ABIE40_RS00415 0.42 +0.5 82,387 - ABIE40_RS00415 0.42 +1.2 82,387 - ABIE40_RS00415 0.42 -2.7 82,387 - ABIE40_RS00415 0.42 -0.1 82,387 - ABIE40_RS00415 0.42 +0.1 82,387 - ABIE40_RS00415 0.42 +2.3 82,387 - ABIE40_RS00415 0.42 +0.5 82,388 + ABIE40_RS00415 0.42 +0.4 82,388 + ABIE40_RS00415 0.42 -0.7 82,388 + ABIE40_RS00415 0.42 -0.9 82,388 + ABIE40_RS00415 0.42 -0.4 82,388 + ABIE40_RS00415 0.42 +0.2 82,388 + ABIE40_RS00415 0.42 -0.1 82,389 - ABIE40_RS00415 0.42 -0.4 82,389 - ABIE40_RS00415 0.42 +1.3 82,389 - ABIE40_RS00415 0.42 +0.2 82,389 - ABIE40_RS00415 0.42 -1.1 82,389 - ABIE40_RS00415 0.42 +0.4 82,460 + ABIE40_RS00415 0.51 -1.0 82,589 + ABIE40_RS00415 0.67 +0.0 82,616 + ABIE40_RS00415 0.70 -0.0 82,616 + ABIE40_RS00415 0.70 -0.2 82,616 + ABIE40_RS00415 0.70 +0.1 82,616 + ABIE40_RS00415 0.70 +0.2 82,616 + ABIE40_RS00415 0.70 -0.2 82,616 + ABIE40_RS00415 0.70 +0.2 82,616 + ABIE40_RS00415 0.70 -1.5 82,617 - ABIE40_RS00415 0.70 -0.6 82,617 - ABIE40_RS00415 0.70 -0.6 82,617 - ABIE40_RS00415 0.70 +0.4 82,758 + ABIE40_RS00415 0.88 +1.3 82,799 + -0.6 82,799 + -0.5 82,799 + -2.0 82,799 + -2.4 82,800 - +0.3 82,800 - +0.7 82,800 - -0.3 82,800 - -0.7 82,854 + -1.0 82,854 + -1.1 82,854 + -0.1 82,854 + -0.3 82,855 - +0.7
Or see this region's nucleotide sequence