Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28685 and ABIE40_RS28690 are separated by 126 nucleotides ABIE40_RS28690 and ABIE40_RS28695 are separated by 178 nucleotides ABIE40_RS28695 and ABIE40_RS28700 are separated by 104 nucleotides
ABIE40_RS28685: ABIE40_RS28685 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 434,570 to 436,366
_RS28685
ABIE40_RS28690: ABIE40_RS28690 - thiamine pyrophosphate-requiring protein, at 436,493 to 438,280
_RS28690
ABIE40_RS28695: ABIE40_RS28695 - DUF6766 family protein, at 438,459 to 439,130
_RS28695
ABIE40_RS28700: ABIE40_RS28700 - flavodoxin family protein, at 439,235 to 440,344
_RS28700
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 435.561 kb on + strand, within ABIE40_RS28685 at 435.561 kb on + strand, within ABIE40_RS28685 at 435.561 kb on + strand, within ABIE40_RS28685 at 435.598 kb on - strand, within ABIE40_RS28685 at 435.815 kb on - strand, within ABIE40_RS28685 at 435.815 kb on - strand, within ABIE40_RS28685 at 435.836 kb on - strand, within ABIE40_RS28685 at 435.836 kb on - strand, within ABIE40_RS28685 at 435.837 kb on + strand, within ABIE40_RS28685 at 435.837 kb on + strand, within ABIE40_RS28685 at 435.837 kb on + strand, within ABIE40_RS28685 at 435.837 kb on + strand, within ABIE40_RS28685 at 435.837 kb on + strand, within ABIE40_RS28685 at 435.838 kb on - strand, within ABIE40_RS28685 at 435.838 kb on - strand, within ABIE40_RS28685 at 435.838 kb on - strand, within ABIE40_RS28685 at 435.838 kb on - strand, within ABIE40_RS28685 at 435.838 kb on - strand, within ABIE40_RS28685 at 435.981 kb on + strand, within ABIE40_RS28685 at 436.028 kb on + strand, within ABIE40_RS28685 at 436.029 kb on - strand, within ABIE40_RS28685 at 436.039 kb on + strand, within ABIE40_RS28685 at 436.116 kb on + strand, within ABIE40_RS28685 at 436.305 kb on - strand at 436.305 kb on - strand at 436.351 kb on + strand at 436.352 kb on - strand at 436.352 kb on - strand at 436.523 kb on + strand at 436.523 kb on + strand at 436.524 kb on - strand at 436.524 kb on - strand at 436.524 kb on - strand at 436.771 kb on - strand, within ABIE40_RS28690 at 436.876 kb on + strand, within ABIE40_RS28690 at 436.877 kb on - strand, within ABIE40_RS28690 at 436.877 kb on - strand, within ABIE40_RS28690 at 436.877 kb on - strand, within ABIE40_RS28690 at 436.877 kb on - strand, within ABIE40_RS28690 at 436.978 kb on + strand, within ABIE40_RS28690 at 436.979 kb on - strand, within ABIE40_RS28690 at 436.979 kb on - strand, within ABIE40_RS28690 at 436.979 kb on - strand, within ABIE40_RS28690 at 436.999 kb on - strand, within ABIE40_RS28690 at 436.999 kb on - strand, within ABIE40_RS28690 at 437.016 kb on + strand, within ABIE40_RS28690 at 437.017 kb on - strand, within ABIE40_RS28690 at 437.097 kb on + strand, within ABIE40_RS28690 at 437.097 kb on + strand, within ABIE40_RS28690 at 437.097 kb on + strand, within ABIE40_RS28690 at 437.499 kb on - strand, within ABIE40_RS28690 at 437.534 kb on - strand, within ABIE40_RS28690 at 437.747 kb on - strand, within ABIE40_RS28690 at 437.747 kb on - strand, within ABIE40_RS28690 at 437.747 kb on - strand, within ABIE40_RS28690 at 437.772 kb on + strand, within ABIE40_RS28690 at 437.772 kb on + strand, within ABIE40_RS28690 at 437.772 kb on + strand, within ABIE40_RS28690 at 437.773 kb on - strand, within ABIE40_RS28690 at 437.773 kb on - strand, within ABIE40_RS28690 at 438.021 kb on + strand, within ABIE40_RS28690 at 438.021 kb on + strand, within ABIE40_RS28690 at 438.022 kb on - strand, within ABIE40_RS28690 at 438.210 kb on + strand at 438.227 kb on + strand at 438.227 kb on + strand at 438.228 kb on - strand at 438.240 kb on + strand at 438.241 kb on - strand at 438.287 kb on - strand at 438.316 kb on - strand at 438.388 kb on - strand at 438.398 kb on + strand at 438.443 kb on + strand at 438.444 kb on - strand at 438.444 kb on - strand at 438.460 kb on + strand at 438.461 kb on - strand at 438.461 kb on - strand at 438.743 kb on - strand, within ABIE40_RS28695 at 438.748 kb on + strand, within ABIE40_RS28695 at 438.748 kb on + strand, within ABIE40_RS28695 at 438.748 kb on + strand, within ABIE40_RS28695 at 438.884 kb on + strand, within ABIE40_RS28695 at 438.895 kb on + strand, within ABIE40_RS28695 at 438.895 kb on + strand, within ABIE40_RS28695 at 438.895 kb on + strand, within ABIE40_RS28695 at 438.895 kb on + strand, within ABIE40_RS28695 at 438.896 kb on - strand, within ABIE40_RS28695 at 438.970 kb on + strand, within ABIE40_RS28695 at 438.971 kb on - strand, within ABIE40_RS28695 at 438.971 kb on - strand, within ABIE40_RS28695 at 439.018 kb on + strand, within ABIE40_RS28695 at 439.018 kb on + strand, within ABIE40_RS28695 at 439.019 kb on - strand, within ABIE40_RS28695 at 439.080 kb on - strand at 439.123 kb on + strand at 439.124 kb on - strand at 439.124 kb on - strand at 439.144 kb on + strand at 439.209 kb on + strand at 439.228 kb on + strand at 439.228 kb on + strand at 439.228 kb on + strand at 439.229 kb on - strand at 439.229 kb on - strand at 439.235 kb on - strand at 439.235 kb on - strand at 439.255 kb on + strand at 439.255 kb on + strand at 439.256 kb on - strand at 439.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 435,561 + ABIE40_RS28685 0.55 +0.8 435,561 + ABIE40_RS28685 0.55 +1.2 435,561 + ABIE40_RS28685 0.55 -2.5 435,598 - ABIE40_RS28685 0.57 -0.4 435,815 - ABIE40_RS28685 0.69 -0.8 435,815 - ABIE40_RS28685 0.69 +0.5 435,836 - ABIE40_RS28685 0.70 +0.6 435,836 - ABIE40_RS28685 0.70 +0.4 435,837 + ABIE40_RS28685 0.71 -1.8 435,837 + ABIE40_RS28685 0.71 +0.8 435,837 + ABIE40_RS28685 0.71 +1.6 435,837 + ABIE40_RS28685 0.71 -2.6 435,837 + ABIE40_RS28685 0.71 +0.9 435,838 - ABIE40_RS28685 0.71 -1.7 435,838 - ABIE40_RS28685 0.71 -1.5 435,838 - ABIE40_RS28685 0.71 -0.1 435,838 - ABIE40_RS28685 0.71 +0.2 435,838 - ABIE40_RS28685 0.71 -1.0 435,981 + ABIE40_RS28685 0.79 +1.3 436,028 + ABIE40_RS28685 0.81 +0.4 436,029 - ABIE40_RS28685 0.81 -1.4 436,039 + ABIE40_RS28685 0.82 +0.5 436,116 + ABIE40_RS28685 0.86 -1.5 436,305 - -0.9 436,305 - +1.7 436,351 + -1.3 436,352 - +1.4 436,352 - +1.6 436,523 + +1.5 436,523 + -0.7 436,524 - +0.9 436,524 - +0.2 436,524 - -0.3 436,771 - ABIE40_RS28690 0.16 -1.7 436,876 + ABIE40_RS28690 0.21 +0.9 436,877 - ABIE40_RS28690 0.21 -2.4 436,877 - ABIE40_RS28690 0.21 +0.2 436,877 - ABIE40_RS28690 0.21 +3.1 436,877 - ABIE40_RS28690 0.21 +0.2 436,978 + ABIE40_RS28690 0.27 -0.8 436,979 - ABIE40_RS28690 0.27 -1.6 436,979 - ABIE40_RS28690 0.27 +1.7 436,979 - ABIE40_RS28690 0.27 -0.1 436,999 - ABIE40_RS28690 0.28 +0.7 436,999 - ABIE40_RS28690 0.28 -3.4 437,016 + ABIE40_RS28690 0.29 +2.5 437,017 - ABIE40_RS28690 0.29 +0.2 437,097 + ABIE40_RS28690 0.34 +2.9 437,097 + ABIE40_RS28690 0.34 +2.5 437,097 + ABIE40_RS28690 0.34 -0.5 437,499 - ABIE40_RS28690 0.56 +0.2 437,534 - ABIE40_RS28690 0.58 +0.9 437,747 - ABIE40_RS28690 0.70 +0.1 437,747 - ABIE40_RS28690 0.70 -0.3 437,747 - ABIE40_RS28690 0.70 -0.5 437,772 + ABIE40_RS28690 0.72 +2.4 437,772 + ABIE40_RS28690 0.72 +2.9 437,772 + ABIE40_RS28690 0.72 +1.5 437,773 - ABIE40_RS28690 0.72 -0.3 437,773 - ABIE40_RS28690 0.72 -1.4 438,021 + ABIE40_RS28690 0.85 -0.5 438,021 + ABIE40_RS28690 0.85 +1.5 438,022 - ABIE40_RS28690 0.86 +1.3 438,210 + -3.8 438,227 + -0.3 438,227 + -0.7 438,228 - +2.5 438,240 + +2.5 438,241 - -1.4 438,287 - -1.6 438,316 - +2.7 438,388 - +0.5 438,398 + +0.8 438,443 + -1.6 438,444 - -2.0 438,444 - -1.8 438,460 + -1.0 438,461 - +1.5 438,461 - +0.7 438,743 - ABIE40_RS28695 0.42 +0.9 438,748 + ABIE40_RS28695 0.43 -1.5 438,748 + ABIE40_RS28695 0.43 +1.6 438,748 + ABIE40_RS28695 0.43 -1.0 438,884 + ABIE40_RS28695 0.63 +1.5 438,895 + ABIE40_RS28695 0.65 -0.3 438,895 + ABIE40_RS28695 0.65 -0.7 438,895 + ABIE40_RS28695 0.65 +0.7 438,895 + ABIE40_RS28695 0.65 -1.8 438,896 - ABIE40_RS28695 0.65 -0.8 438,970 + ABIE40_RS28695 0.76 +1.1 438,971 - ABIE40_RS28695 0.76 +1.5 438,971 - ABIE40_RS28695 0.76 +0.7 439,018 + ABIE40_RS28695 0.83 +1.6 439,018 + ABIE40_RS28695 0.83 -2.4 439,019 - ABIE40_RS28695 0.83 -0.9 439,080 - +0.8 439,123 + -0.3 439,124 - +1.1 439,124 - -0.8 439,144 + +0.9 439,209 + -0.3 439,228 + +0.5 439,228 + -0.8 439,228 + -1.1 439,229 - +1.6 439,229 - +0.6 439,235 - +1.7 439,235 - -3.2 439,255 + -0.3 439,255 + +0.2 439,256 - +0.6 439,256 - -2.1
Or see this region's nucleotide sequence