Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19625 and ABIE40_RS19630 overlap by 4 nucleotides ABIE40_RS19630 and ABIE40_RS19635 are separated by 9 nucleotides ABIE40_RS19635 and ABIE40_RS19640 overlap by 1 nucleotides ABIE40_RS19640 and ABIE40_RS19645 are separated by 186 nucleotides
ABIE40_RS19625: ABIE40_RS19625 - 3-oxoadipate enol-lactonase, at 20,513 to 21,322
_RS19625
ABIE40_RS19630: ABIE40_RS19630 - 4-carboxymuconolactone decarboxylase, at 21,319 to 21,723
_RS19630
ABIE40_RS19635: ABIE40_RS19635 - protocatechuate 3,4-dioxygenase subunit beta, at 21,733 to 22,482
_RS19635
ABIE40_RS19640: ABIE40_RS19640 - protocatechuate 3,4-dioxygenase subunit alpha, at 22,482 to 23,096
_RS19640
ABIE40_RS19645: ABIE40_RS19645 - acyltransferase, at 23,283 to 24,452
_RS19645
Position (kb) 21
22
23 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 20.829 kb on - strand, within ABIE40_RS19625 at 20.829 kb on - strand, within ABIE40_RS19625 at 21.011 kb on + strand, within ABIE40_RS19625 at 21.011 kb on + strand, within ABIE40_RS19625 at 21.011 kb on + strand, within ABIE40_RS19625 at 21.011 kb on + strand, within ABIE40_RS19625 at 21.011 kb on + strand, within ABIE40_RS19625 at 21.012 kb on - strand, within ABIE40_RS19625 at 21.012 kb on - strand, within ABIE40_RS19625 at 21.012 kb on - strand, within ABIE40_RS19625 at 21.012 kb on - strand, within ABIE40_RS19625 at 21.012 kb on - strand, within ABIE40_RS19625 at 21.020 kb on + strand, within ABIE40_RS19625 at 21.057 kb on - strand, within ABIE40_RS19625 at 21.112 kb on + strand, within ABIE40_RS19625 at 21.589 kb on - strand, within ABIE40_RS19630 at 21.640 kb on + strand, within ABIE40_RS19630 at 21.640 kb on + strand, within ABIE40_RS19630 at 21.640 kb on + strand, within ABIE40_RS19630 at 21.640 kb on + strand, within ABIE40_RS19630 at 21.641 kb on - strand, within ABIE40_RS19630 at 21.641 kb on - strand, within ABIE40_RS19630 at 21.641 kb on - strand, within ABIE40_RS19630 at 21.641 kb on - strand, within ABIE40_RS19630 at 21.721 kb on + strand at 21.721 kb on + strand at 21.721 kb on + strand at 21.722 kb on - strand at 21.743 kb on + strand at 21.820 kb on + strand, within ABIE40_RS19635 at 21.945 kb on + strand, within ABIE40_RS19635 at 21.945 kb on + strand, within ABIE40_RS19635 at 21.945 kb on + strand, within ABIE40_RS19635 at 21.946 kb on - strand, within ABIE40_RS19635 at 21.946 kb on - strand, within ABIE40_RS19635 at 21.946 kb on - strand, within ABIE40_RS19635 at 21.946 kb on - strand, within ABIE40_RS19635 at 21.946 kb on - strand, within ABIE40_RS19635 at 21.949 kb on + strand, within ABIE40_RS19635 at 22.096 kb on + strand, within ABIE40_RS19635 at 22.096 kb on + strand, within ABIE40_RS19635 at 22.096 kb on + strand, within ABIE40_RS19635 at 22.096 kb on + strand, within ABIE40_RS19635 at 22.097 kb on - strand, within ABIE40_RS19635 at 22.097 kb on - strand, within ABIE40_RS19635 at 22.097 kb on - strand, within ABIE40_RS19635 at 22.162 kb on + strand, within ABIE40_RS19635 at 22.163 kb on - strand, within ABIE40_RS19635 at 22.163 kb on - strand, within ABIE40_RS19635 at 22.163 kb on - strand, within ABIE40_RS19635 at 22.165 kb on + strand, within ABIE40_RS19635 at 22.165 kb on + strand, within ABIE40_RS19635 at 22.166 kb on - strand, within ABIE40_RS19635 at 22.234 kb on - strand, within ABIE40_RS19635 at 22.288 kb on + strand, within ABIE40_RS19635 at 22.288 kb on + strand, within ABIE40_RS19635 at 22.288 kb on + strand, within ABIE40_RS19635 at 22.289 kb on - strand, within ABIE40_RS19635 at 22.289 kb on - strand, within ABIE40_RS19635 at 22.289 kb on - strand, within ABIE40_RS19635 at 22.332 kb on + strand, within ABIE40_RS19635 at 22.389 kb on + strand, within ABIE40_RS19635 at 22.389 kb on + strand, within ABIE40_RS19635 at 22.389 kb on + strand, within ABIE40_RS19635 at 22.390 kb on - strand, within ABIE40_RS19635 at 22.390 kb on - strand, within ABIE40_RS19635 at 22.390 kb on - strand, within ABIE40_RS19635 at 22.390 kb on - strand, within ABIE40_RS19635 at 22.414 kb on + strand at 22.414 kb on + strand at 22.415 kb on - strand at 22.415 kb on - strand at 22.415 kb on - strand at 22.500 kb on + strand at 22.500 kb on + strand at 22.536 kb on + strand at 22.536 kb on + strand at 22.536 kb on + strand at 22.536 kb on + strand at 22.536 kb on + strand at 22.537 kb on - strand at 22.537 kb on - strand at 22.537 kb on - strand at 22.537 kb on - strand at 22.537 kb on - strand at 22.584 kb on + strand, within ABIE40_RS19640 at 22.584 kb on + strand, within ABIE40_RS19640 at 22.585 kb on - strand, within ABIE40_RS19640 at 22.585 kb on - strand, within ABIE40_RS19640 at 22.728 kb on + strand, within ABIE40_RS19640 at 22.729 kb on - strand, within ABIE40_RS19640 at 22.730 kb on + strand, within ABIE40_RS19640 at 22.731 kb on - strand, within ABIE40_RS19640 at 22.815 kb on + strand, within ABIE40_RS19640 at 22.816 kb on - strand, within ABIE40_RS19640 at 22.816 kb on - strand, within ABIE40_RS19640 at 22.898 kb on - strand, within ABIE40_RS19640 at 22.935 kb on + strand, within ABIE40_RS19640 at 22.935 kb on + strand, within ABIE40_RS19640 at 22.935 kb on + strand, within ABIE40_RS19640 at 22.935 kb on + strand, within ABIE40_RS19640 at 22.936 kb on - strand, within ABIE40_RS19640 at 22.936 kb on - strand, within ABIE40_RS19640 at 22.936 kb on - strand, within ABIE40_RS19640 at 22.936 kb on - strand, within ABIE40_RS19640 at 23.015 kb on + strand, within ABIE40_RS19640 at 23.015 kb on + strand, within ABIE40_RS19640 at 23.015 kb on + strand, within ABIE40_RS19640 at 23.016 kb on - strand, within ABIE40_RS19640 at 23.016 kb on - strand, within ABIE40_RS19640 at 23.087 kb on - strand at 23.091 kb on - strand at 23.366 kb on + strand at 23.445 kb on + strand, within ABIE40_RS19645
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 20,829 - ABIE40_RS19625 0.39 -1.0 20,829 - ABIE40_RS19625 0.39 +0.8 21,011 + ABIE40_RS19625 0.61 -1.7 21,011 + ABIE40_RS19625 0.61 -0.7 21,011 + ABIE40_RS19625 0.61 +1.2 21,011 + ABIE40_RS19625 0.61 +0.2 21,011 + ABIE40_RS19625 0.61 +1.8 21,012 - ABIE40_RS19625 0.62 +0.2 21,012 - ABIE40_RS19625 0.62 +0.0 21,012 - ABIE40_RS19625 0.62 -2.4 21,012 - ABIE40_RS19625 0.62 +0.6 21,012 - ABIE40_RS19625 0.62 +0.7 21,020 + ABIE40_RS19625 0.63 -1.2 21,057 - ABIE40_RS19625 0.67 -1.3 21,112 + ABIE40_RS19625 0.74 -1.6 21,589 - ABIE40_RS19630 0.67 +0.4 21,640 + ABIE40_RS19630 0.79 +0.1 21,640 + ABIE40_RS19630 0.79 +0.6 21,640 + ABIE40_RS19630 0.79 +0.0 21,640 + ABIE40_RS19630 0.79 -1.8 21,641 - ABIE40_RS19630 0.80 +1.3 21,641 - ABIE40_RS19630 0.80 +0.5 21,641 - ABIE40_RS19630 0.80 -0.7 21,641 - ABIE40_RS19630 0.80 -0.3 21,721 + -1.5 21,721 + +1.6 21,721 + +1.6 21,722 - +0.6 21,743 + +0.6 21,820 + ABIE40_RS19635 0.12 -0.8 21,945 + ABIE40_RS19635 0.28 +0.6 21,945 + ABIE40_RS19635 0.28 -1.8 21,945 + ABIE40_RS19635 0.28 -0.8 21,946 - ABIE40_RS19635 0.28 +0.3 21,946 - ABIE40_RS19635 0.28 -0.6 21,946 - ABIE40_RS19635 0.28 -0.4 21,946 - ABIE40_RS19635 0.28 -0.4 21,946 - ABIE40_RS19635 0.28 -0.4 21,949 + ABIE40_RS19635 0.29 -1.8 22,096 + ABIE40_RS19635 0.48 -0.1 22,096 + ABIE40_RS19635 0.48 -1.0 22,096 + ABIE40_RS19635 0.48 +1.5 22,096 + ABIE40_RS19635 0.48 +0.6 22,097 - ABIE40_RS19635 0.49 +2.0 22,097 - ABIE40_RS19635 0.49 -0.1 22,097 - ABIE40_RS19635 0.49 +1.5 22,162 + ABIE40_RS19635 0.57 +0.2 22,163 - ABIE40_RS19635 0.57 -0.1 22,163 - ABIE40_RS19635 0.57 -0.4 22,163 - ABIE40_RS19635 0.57 -0.3 22,165 + ABIE40_RS19635 0.58 -2.6 22,165 + ABIE40_RS19635 0.58 +0.2 22,166 - ABIE40_RS19635 0.58 -2.2 22,234 - ABIE40_RS19635 0.67 -0.2 22,288 + ABIE40_RS19635 0.74 -0.2 22,288 + ABIE40_RS19635 0.74 +0.7 22,288 + ABIE40_RS19635 0.74 +1.8 22,289 - ABIE40_RS19635 0.74 +1.4 22,289 - ABIE40_RS19635 0.74 -0.2 22,289 - ABIE40_RS19635 0.74 +0.6 22,332 + ABIE40_RS19635 0.80 +0.2 22,389 + ABIE40_RS19635 0.87 +1.9 22,389 + ABIE40_RS19635 0.87 +1.2 22,389 + ABIE40_RS19635 0.87 +1.0 22,390 - ABIE40_RS19635 0.88 +0.6 22,390 - ABIE40_RS19635 0.88 -1.8 22,390 - ABIE40_RS19635 0.88 -0.8 22,390 - ABIE40_RS19635 0.88 +2.2 22,414 + -0.5 22,414 + -0.4 22,415 - -0.6 22,415 - +0.8 22,415 - +2.2 22,500 + +0.5 22,500 + -0.7 22,536 + +2.2 22,536 + +0.5 22,536 + -0.2 22,536 + -0.4 22,536 + +1.2 22,537 - +1.3 22,537 - +1.2 22,537 - -1.3 22,537 - +2.2 22,537 - -0.1 22,584 + ABIE40_RS19640 0.17 -0.3 22,584 + ABIE40_RS19640 0.17 +0.7 22,585 - ABIE40_RS19640 0.17 +0.2 22,585 - ABIE40_RS19640 0.17 +0.4 22,728 + ABIE40_RS19640 0.40 -0.2 22,729 - ABIE40_RS19640 0.40 -0.2 22,730 + ABIE40_RS19640 0.40 +1.2 22,731 - ABIE40_RS19640 0.40 +0.2 22,815 + ABIE40_RS19640 0.54 +0.1 22,816 - ABIE40_RS19640 0.54 -1.8 22,816 - ABIE40_RS19640 0.54 -1.6 22,898 - ABIE40_RS19640 0.68 -2.1 22,935 + ABIE40_RS19640 0.74 -2.6 22,935 + ABIE40_RS19640 0.74 +0.7 22,935 + ABIE40_RS19640 0.74 +0.0 22,935 + ABIE40_RS19640 0.74 -1.2 22,936 - ABIE40_RS19640 0.74 -2.2 22,936 - ABIE40_RS19640 0.74 +2.2 22,936 - ABIE40_RS19640 0.74 +1.2 22,936 - ABIE40_RS19640 0.74 -1.4 23,015 + ABIE40_RS19640 0.87 -0.4 23,015 + ABIE40_RS19640 0.87 -0.6 23,015 + ABIE40_RS19640 0.87 -2.0 23,016 - ABIE40_RS19640 0.87 -1.0 23,016 - ABIE40_RS19640 0.87 +4.2 23,087 - +0.6 23,091 - -0.0 23,366 + +1.4 23,445 + ABIE40_RS19645 0.14 -1.2
Or see this region's nucleotide sequence