Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23095 and ABIE40_RS23100 are separated by 145 nucleotides ABIE40_RS23100 and ABIE40_RS23105 are separated by 181 nucleotides ABIE40_RS23105 and ABIE40_RS23110 are separated by 41 nucleotides
ABIE40_RS23095: ABIE40_RS23095 - LysR substrate-binding domain-containing protein, at 766,514 to 767,410
_RS23095
ABIE40_RS23100: ABIE40_RS23100 - hypothetical protein, at 767,556 to 767,753
_RS23100
ABIE40_RS23105: ABIE40_RS23105 - MetQ/NlpA family ABC transporter substrate-binding protein, at 767,935 to 768,711
_RS23105
ABIE40_RS23110: ABIE40_RS23110 - methionine ABC transporter permease, at 768,753 to 769,421
_RS23110
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 766.715 kb on + strand, within ABIE40_RS23095 at 766.715 kb on + strand, within ABIE40_RS23095 at 766.715 kb on + strand, within ABIE40_RS23095 at 766.715 kb on + strand, within ABIE40_RS23095 at 766.715 kb on + strand, within ABIE40_RS23095 at 766.715 kb on + strand, within ABIE40_RS23095 at 766.716 kb on - strand, within ABIE40_RS23095 at 767.111 kb on + strand, within ABIE40_RS23095 at 767.111 kb on + strand, within ABIE40_RS23095 at 767.122 kb on + strand, within ABIE40_RS23095 at 767.122 kb on + strand, within ABIE40_RS23095 at 767.122 kb on + strand, within ABIE40_RS23095 at 767.122 kb on + strand, within ABIE40_RS23095 at 767.123 kb on - strand, within ABIE40_RS23095 at 767.123 kb on - strand, within ABIE40_RS23095 at 767.123 kb on - strand, within ABIE40_RS23095 at 767.123 kb on - strand, within ABIE40_RS23095 at 767.123 kb on - strand, within ABIE40_RS23095 at 767.253 kb on + strand, within ABIE40_RS23095 at 767.253 kb on + strand, within ABIE40_RS23095 at 767.253 kb on + strand, within ABIE40_RS23095 at 767.253 kb on + strand, within ABIE40_RS23095 at 767.253 kb on + strand, within ABIE40_RS23095 at 767.331 kb on - strand at 767.331 kb on - strand at 767.331 kb on - strand at 767.431 kb on + strand at 767.432 kb on - strand at 767.432 kb on - strand at 767.432 kb on - strand at 767.452 kb on + strand at 767.452 kb on + strand at 767.452 kb on + strand at 767.469 kb on + strand at 767.469 kb on + strand at 767.469 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.473 kb on + strand at 767.474 kb on - strand at 767.474 kb on - strand at 767.474 kb on - strand at 767.474 kb on - strand at 767.474 kb on - strand at 767.474 kb on - strand at 767.474 kb on - strand at 767.576 kb on + strand, within ABIE40_RS23100 at 767.576 kb on + strand, within ABIE40_RS23100 at 767.679 kb on + strand, within ABIE40_RS23100 at 767.679 kb on + strand, within ABIE40_RS23100 at 767.679 kb on + strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.680 kb on - strand, within ABIE40_RS23100 at 767.834 kb on + strand at 767.835 kb on - strand at 767.835 kb on - strand at 767.936 kb on + strand at 768.003 kb on - strand at 768.071 kb on + strand, within ABIE40_RS23105 at 768.072 kb on - strand, within ABIE40_RS23105 at 768.137 kb on + strand, within ABIE40_RS23105 at 768.137 kb on + strand, within ABIE40_RS23105 at 768.138 kb on - strand, within ABIE40_RS23105 at 768.395 kb on + strand, within ABIE40_RS23105 at 768.473 kb on + strand, within ABIE40_RS23105 at 768.473 kb on + strand, within ABIE40_RS23105 at 768.473 kb on + strand, within ABIE40_RS23105 at 768.539 kb on + strand, within ABIE40_RS23105 at 768.726 kb on + strand at 768.727 kb on - strand at 768.727 kb on - strand at 768.727 kb on - strand at 768.727 kb on - strand at 768.732 kb on + strand at 768.732 kb on + strand at 768.733 kb on - strand at 768.733 kb on - strand at 768.735 kb on - strand at 768.735 kb on - strand at 768.735 kb on - strand at 768.735 kb on - strand at 768.739 kb on + strand at 768.739 kb on + strand at 768.739 kb on + strand at 768.740 kb on - strand at 768.740 kb on - strand at 768.740 kb on - strand at 768.748 kb on + strand at 768.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 766,715 + ABIE40_RS23095 0.22 -1.2 766,715 + ABIE40_RS23095 0.22 +0.5 766,715 + ABIE40_RS23095 0.22 -0.8 766,715 + ABIE40_RS23095 0.22 -1.6 766,715 + ABIE40_RS23095 0.22 -0.9 766,715 + ABIE40_RS23095 0.22 -2.6 766,716 - ABIE40_RS23095 0.23 -2.3 767,111 + ABIE40_RS23095 0.67 +0.4 767,111 + ABIE40_RS23095 0.67 -2.8 767,122 + ABIE40_RS23095 0.68 -0.4 767,122 + ABIE40_RS23095 0.68 +0.5 767,122 + ABIE40_RS23095 0.68 -1.0 767,122 + ABIE40_RS23095 0.68 +1.3 767,123 - ABIE40_RS23095 0.68 -2.1 767,123 - ABIE40_RS23095 0.68 -1.4 767,123 - ABIE40_RS23095 0.68 -0.9 767,123 - ABIE40_RS23095 0.68 +0.3 767,123 - ABIE40_RS23095 0.68 -0.0 767,253 + ABIE40_RS23095 0.82 -0.1 767,253 + ABIE40_RS23095 0.82 -1.0 767,253 + ABIE40_RS23095 0.82 +0.5 767,253 + ABIE40_RS23095 0.82 -0.7 767,253 + ABIE40_RS23095 0.82 -0.9 767,331 - -0.8 767,331 - -1.0 767,331 - -0.2 767,431 + -0.6 767,432 - -1.0 767,432 - -0.2 767,432 - +0.1 767,452 + +0.2 767,452 + -1.0 767,452 + -0.1 767,469 + -0.6 767,469 + +0.6 767,469 + +0.5 767,473 + +0.1 767,473 + +0.9 767,473 + -0.2 767,473 + +1.1 767,473 + -1.4 767,473 + +1.4 767,473 + +0.4 767,473 + -0.6 767,473 + -0.0 767,473 + -1.4 767,474 - -0.4 767,474 - -0.4 767,474 - -0.7 767,474 - +0.1 767,474 - -1.6 767,474 - -0.1 767,474 - +0.8 767,576 + ABIE40_RS23100 0.10 -0.1 767,576 + ABIE40_RS23100 0.10 +0.9 767,679 + ABIE40_RS23100 0.62 +2.0 767,679 + ABIE40_RS23100 0.62 +0.6 767,679 + ABIE40_RS23100 0.62 +0.5 767,680 - ABIE40_RS23100 0.63 -0.9 767,680 - ABIE40_RS23100 0.63 -0.6 767,680 - ABIE40_RS23100 0.63 +0.4 767,680 - ABIE40_RS23100 0.63 +0.1 767,680 - ABIE40_RS23100 0.63 -1.6 767,680 - ABIE40_RS23100 0.63 +0.8 767,680 - ABIE40_RS23100 0.63 +0.6 767,680 - ABIE40_RS23100 0.63 -0.6 767,834 + -1.0 767,835 - +2.0 767,835 - -0.3 767,936 + -0.2 768,003 - +0.2 768,071 + ABIE40_RS23105 0.18 -0.9 768,072 - ABIE40_RS23105 0.18 +0.5 768,137 + ABIE40_RS23105 0.26 -0.4 768,137 + ABIE40_RS23105 0.26 -0.1 768,138 - ABIE40_RS23105 0.26 -0.2 768,395 + ABIE40_RS23105 0.59 +0.4 768,473 + ABIE40_RS23105 0.69 -0.9 768,473 + ABIE40_RS23105 0.69 -1.3 768,473 + ABIE40_RS23105 0.69 -0.7 768,539 + ABIE40_RS23105 0.78 +1.0 768,726 + +0.1 768,727 - +1.0 768,727 - +0.1 768,727 - +1.3 768,727 - -0.0 768,732 + -2.0 768,732 + -1.6 768,733 - +0.6 768,733 - -2.9 768,735 - +0.4 768,735 - -0.6 768,735 - +0.4 768,735 - +1.0 768,739 + -0.1 768,739 + -0.0 768,739 + -1.0 768,740 - +1.4 768,740 - -1.1 768,740 - +0.7 768,748 + +1.5 768,749 - +0.6
Or see this region's nucleotide sequence