Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22575 and ABIE40_RS22580 are separated by 160 nucleotides ABIE40_RS22580 and ABIE40_RS22585 overlap by 4 nucleotides ABIE40_RS22585 and ABIE40_RS22590 are separated by 136 nucleotides ABIE40_RS22590 and ABIE40_RS22595 are separated by 10 nucleotides
ABIE40_RS22575: ABIE40_RS22575 - lytic transglycosylase domain-containing protein, at 654,421 to 655,332
_RS22575
ABIE40_RS22580: ABIE40_RS22580 - peptide-methionine (R)-S-oxide reductase MsrB, at 655,493 to 655,942
_RS22580
ABIE40_RS22585: ABIE40_RS22585 - peptide-methionine (S)-S-oxide reductase MsrA, at 655,939 to 656,445
_RS22585
ABIE40_RS22590: ABIE40_RS22590 - hypothetical protein, at 656,582 to 656,878
_RS22590
ABIE40_RS22595: ABIE40_RS22595 - EAL domain-containing protein, at 656,889 to 658,130
_RS22595
Position (kb) 655
656
657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 655.074 kb on + strand, within ABIE40_RS22575 at 655.074 kb on + strand, within ABIE40_RS22575 at 655.074 kb on + strand, within ABIE40_RS22575 at 655.074 kb on + strand, within ABIE40_RS22575 at 655.075 kb on - strand, within ABIE40_RS22575 at 655.075 kb on - strand, within ABIE40_RS22575 at 655.094 kb on + strand, within ABIE40_RS22575 at 655.094 kb on + strand, within ABIE40_RS22575 at 655.094 kb on + strand, within ABIE40_RS22575 at 655.094 kb on + strand, within ABIE40_RS22575 at 655.094 kb on + strand, within ABIE40_RS22575 at 655.095 kb on - strand, within ABIE40_RS22575 at 655.234 kb on + strand, within ABIE40_RS22575 at 655.234 kb on + strand, within ABIE40_RS22575 at 655.234 kb on + strand, within ABIE40_RS22575 at 655.234 kb on + strand, within ABIE40_RS22575 at 655.235 kb on - strand, within ABIE40_RS22575 at 655.238 kb on + strand, within ABIE40_RS22575 at 655.239 kb on - strand, within ABIE40_RS22575 at 655.343 kb on + strand at 655.343 kb on + strand at 655.344 kb on - strand at 655.344 kb on - strand at 655.353 kb on + strand at 655.354 kb on - strand at 655.401 kb on + strand at 655.401 kb on + strand at 655.401 kb on + strand at 655.402 kb on - strand at 655.402 kb on - strand at 655.402 kb on - strand at 655.402 kb on - strand at 655.402 kb on - strand at 655.402 kb on - strand at 655.402 kb on - strand at 655.403 kb on + strand at 655.403 kb on + strand at 655.404 kb on - strand at 655.404 kb on - strand at 655.404 kb on - strand at 655.404 kb on - strand at 655.404 kb on - strand at 655.404 kb on - strand at 655.405 kb on + strand at 655.405 kb on + strand at 655.405 kb on + strand at 655.406 kb on - strand at 655.406 kb on - strand at 655.502 kb on + strand at 655.502 kb on + strand at 655.502 kb on + strand at 655.548 kb on - strand, within ABIE40_RS22580 at 655.595 kb on + strand, within ABIE40_RS22580 at 655.622 kb on + strand, within ABIE40_RS22580 at 655.622 kb on + strand, within ABIE40_RS22580 at 655.622 kb on + strand, within ABIE40_RS22580 at 655.623 kb on - strand, within ABIE40_RS22580 at 655.623 kb on - strand, within ABIE40_RS22580 at 655.670 kb on + strand, within ABIE40_RS22580 at 655.671 kb on - strand, within ABIE40_RS22580 at 655.671 kb on - strand, within ABIE40_RS22580 at 655.671 kb on - strand, within ABIE40_RS22580 at 655.671 kb on - strand, within ABIE40_RS22580 at 655.700 kb on - strand, within ABIE40_RS22580 at 655.904 kb on + strand at 655.905 kb on - strand at 655.905 kb on - strand at 655.913 kb on + strand at 655.913 kb on + strand at 655.913 kb on + strand at 655.913 kb on + strand at 655.914 kb on - strand at 656.005 kb on + strand, within ABIE40_RS22585 at 656.005 kb on + strand, within ABIE40_RS22585 at 656.035 kb on + strand, within ABIE40_RS22585 at 656.036 kb on - strand, within ABIE40_RS22585 at 656.065 kb on + strand, within ABIE40_RS22585 at 656.065 kb on + strand, within ABIE40_RS22585 at 656.066 kb on - strand, within ABIE40_RS22585 at 656.129 kb on - strand, within ABIE40_RS22585 at 656.129 kb on - strand, within ABIE40_RS22585 at 656.210 kb on - strand, within ABIE40_RS22585 at 656.227 kb on + strand, within ABIE40_RS22585 at 656.227 kb on + strand, within ABIE40_RS22585 at 656.227 kb on + strand, within ABIE40_RS22585 at 656.228 kb on - strand, within ABIE40_RS22585 at 656.228 kb on - strand, within ABIE40_RS22585 at 656.228 kb on - strand, within ABIE40_RS22585 at 656.229 kb on + strand, within ABIE40_RS22585 at 656.389 kb on + strand, within ABIE40_RS22585 at 656.389 kb on + strand, within ABIE40_RS22585 at 656.390 kb on - strand, within ABIE40_RS22585 at 656.390 kb on - strand, within ABIE40_RS22585 at 656.390 kb on - strand, within ABIE40_RS22585 at 656.391 kb on + strand, within ABIE40_RS22585 at 656.391 kb on + strand, within ABIE40_RS22585 at 656.391 kb on + strand, within ABIE40_RS22585 at 656.391 kb on + strand, within ABIE40_RS22585 at 656.391 kb on + strand, within ABIE40_RS22585 at 656.391 kb on + strand, within ABIE40_RS22585 at 656.391 kb on + strand, within ABIE40_RS22585 at 656.392 kb on - strand, within ABIE40_RS22585 at 656.392 kb on - strand, within ABIE40_RS22585 at 656.392 kb on - strand, within ABIE40_RS22585 at 656.392 kb on - strand, within ABIE40_RS22585 at 656.459 kb on + strand at 656.459 kb on + strand at 656.508 kb on + strand at 656.511 kb on + strand at 656.621 kb on + strand, within ABIE40_RS22590 at 656.621 kb on + strand, within ABIE40_RS22590 at 656.621 kb on + strand, within ABIE40_RS22590 at 656.621 kb on + strand, within ABIE40_RS22590 at 656.622 kb on - strand, within ABIE40_RS22590 at 656.622 kb on - strand, within ABIE40_RS22590 at 656.622 kb on - strand, within ABIE40_RS22590 at 656.622 kb on - strand, within ABIE40_RS22590 at 656.663 kb on + strand, within ABIE40_RS22590 at 656.663 kb on + strand, within ABIE40_RS22590 at 656.664 kb on - strand, within ABIE40_RS22590 at 656.738 kb on + strand, within ABIE40_RS22590 at 656.738 kb on + strand, within ABIE40_RS22590 at 656.738 kb on + strand, within ABIE40_RS22590 at 656.738 kb on + strand, within ABIE40_RS22590 at 656.739 kb on - strand, within ABIE40_RS22590 at 656.739 kb on - strand, within ABIE40_RS22590 at 656.739 kb on - strand, within ABIE40_RS22590 at 656.739 kb on - strand, within ABIE40_RS22590 at 656.739 kb on - strand, within ABIE40_RS22590 at 656.739 kb on - strand, within ABIE40_RS22590 at 656.777 kb on + strand, within ABIE40_RS22590 at 656.777 kb on + strand, within ABIE40_RS22590 at 656.778 kb on - strand, within ABIE40_RS22590 at 656.778 kb on - strand, within ABIE40_RS22590 at 656.948 kb on - strand at 657.166 kb on + strand, within ABIE40_RS22595 at 657.244 kb on + strand, within ABIE40_RS22595 at 657.245 kb on - strand, within ABIE40_RS22595 at 657.250 kb on + strand, within ABIE40_RS22595 at 657.250 kb on + strand, within ABIE40_RS22595 at 657.250 kb on + strand, within ABIE40_RS22595 at 657.250 kb on + strand, within ABIE40_RS22595 at 657.251 kb on - strand, within ABIE40_RS22595
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 655,074 + ABIE40_RS22575 0.72 -0.6 655,074 + ABIE40_RS22575 0.72 -2.0 655,074 + ABIE40_RS22575 0.72 -0.2 655,074 + ABIE40_RS22575 0.72 -1.1 655,075 - ABIE40_RS22575 0.72 -0.1 655,075 - ABIE40_RS22575 0.72 -0.4 655,094 + ABIE40_RS22575 0.74 +1.5 655,094 + ABIE40_RS22575 0.74 -3.4 655,094 + ABIE40_RS22575 0.74 -1.1 655,094 + ABIE40_RS22575 0.74 +0.3 655,094 + ABIE40_RS22575 0.74 -1.6 655,095 - ABIE40_RS22575 0.74 -3.3 655,234 + ABIE40_RS22575 0.89 -0.0 655,234 + ABIE40_RS22575 0.89 +0.2 655,234 + ABIE40_RS22575 0.89 -0.8 655,234 + ABIE40_RS22575 0.89 +0.9 655,235 - ABIE40_RS22575 0.89 +0.8 655,238 + ABIE40_RS22575 0.90 -2.1 655,239 - ABIE40_RS22575 0.90 +0.0 655,343 + +0.4 655,343 + -0.6 655,344 - +1.3 655,344 - +0.4 655,353 + +0.6 655,354 - -0.6 655,401 + -0.1 655,401 + -0.6 655,401 + -0.1 655,402 - -0.1 655,402 - -3.9 655,402 - +1.2 655,402 - +0.2 655,402 - -0.6 655,402 - -0.3 655,402 - -0.2 655,403 + -0.9 655,403 + -0.0 655,404 - -0.7 655,404 - -1.1 655,404 - +0.7 655,404 - -0.5 655,404 - -1.0 655,404 - -0.6 655,405 + -0.3 655,405 + -1.1 655,405 + -1.1 655,406 - -1.3 655,406 - +0.4 655,502 + +0.9 655,502 + -1.0 655,502 + -0.4 655,548 - ABIE40_RS22580 0.12 -0.5 655,595 + ABIE40_RS22580 0.23 -1.4 655,622 + ABIE40_RS22580 0.29 -0.2 655,622 + ABIE40_RS22580 0.29 +0.6 655,622 + ABIE40_RS22580 0.29 -1.7 655,623 - ABIE40_RS22580 0.29 -2.1 655,623 - ABIE40_RS22580 0.29 -0.2 655,670 + ABIE40_RS22580 0.39 +0.3 655,671 - ABIE40_RS22580 0.40 -2.0 655,671 - ABIE40_RS22580 0.40 +0.2 655,671 - ABIE40_RS22580 0.40 +0.5 655,671 - ABIE40_RS22580 0.40 +0.5 655,700 - ABIE40_RS22580 0.46 -1.0 655,904 + +0.3 655,905 - -1.4 655,905 - +1.9 655,913 + +0.7 655,913 + +1.1 655,913 + +0.0 655,913 + +0.8 655,914 - +2.5 656,005 + ABIE40_RS22585 0.13 -1.2 656,005 + ABIE40_RS22585 0.13 +0.8 656,035 + ABIE40_RS22585 0.19 -0.4 656,036 - ABIE40_RS22585 0.19 -0.2 656,065 + ABIE40_RS22585 0.25 -0.6 656,065 + ABIE40_RS22585 0.25 -0.9 656,066 - ABIE40_RS22585 0.25 -0.0 656,129 - ABIE40_RS22585 0.37 -0.1 656,129 - ABIE40_RS22585 0.37 -0.6 656,210 - ABIE40_RS22585 0.53 -0.2 656,227 + ABIE40_RS22585 0.57 +0.8 656,227 + ABIE40_RS22585 0.57 +0.5 656,227 + ABIE40_RS22585 0.57 -0.4 656,228 - ABIE40_RS22585 0.57 -2.1 656,228 - ABIE40_RS22585 0.57 +0.2 656,228 - ABIE40_RS22585 0.57 -1.8 656,229 + ABIE40_RS22585 0.57 +0.5 656,389 + ABIE40_RS22585 0.89 +0.9 656,389 + ABIE40_RS22585 0.89 +0.0 656,390 - ABIE40_RS22585 0.89 -0.1 656,390 - ABIE40_RS22585 0.89 -1.4 656,390 - ABIE40_RS22585 0.89 +0.8 656,391 + ABIE40_RS22585 0.89 -0.7 656,391 + ABIE40_RS22585 0.89 +0.7 656,391 + ABIE40_RS22585 0.89 +0.4 656,391 + ABIE40_RS22585 0.89 +0.4 656,391 + ABIE40_RS22585 0.89 -0.8 656,391 + ABIE40_RS22585 0.89 +0.8 656,391 + ABIE40_RS22585 0.89 +0.1 656,392 - ABIE40_RS22585 0.89 -0.3 656,392 - ABIE40_RS22585 0.89 -1.1 656,392 - ABIE40_RS22585 0.89 +0.3 656,392 - ABIE40_RS22585 0.89 -1.2 656,459 + -0.3 656,459 + +0.7 656,508 + +0.3 656,511 + +1.9 656,621 + ABIE40_RS22590 0.13 -1.0 656,621 + ABIE40_RS22590 0.13 +1.5 656,621 + ABIE40_RS22590 0.13 +0.2 656,621 + ABIE40_RS22590 0.13 +0.5 656,622 - ABIE40_RS22590 0.13 -0.7 656,622 - ABIE40_RS22590 0.13 -0.0 656,622 - ABIE40_RS22590 0.13 +0.1 656,622 - ABIE40_RS22590 0.13 +0.6 656,663 + ABIE40_RS22590 0.27 -0.4 656,663 + ABIE40_RS22590 0.27 +0.0 656,664 - ABIE40_RS22590 0.28 +0.6 656,738 + ABIE40_RS22590 0.53 -1.1 656,738 + ABIE40_RS22590 0.53 +0.4 656,738 + ABIE40_RS22590 0.53 -0.9 656,738 + ABIE40_RS22590 0.53 -0.1 656,739 - ABIE40_RS22590 0.53 +1.1 656,739 - ABIE40_RS22590 0.53 -0.2 656,739 - ABIE40_RS22590 0.53 +0.9 656,739 - ABIE40_RS22590 0.53 +0.5 656,739 - ABIE40_RS22590 0.53 -0.8 656,739 - ABIE40_RS22590 0.53 -0.3 656,777 + ABIE40_RS22590 0.66 +0.9 656,777 + ABIE40_RS22590 0.66 -1.8 656,778 - ABIE40_RS22590 0.66 -0.0 656,778 - ABIE40_RS22590 0.66 -0.6 656,948 - +0.4 657,166 + ABIE40_RS22595 0.22 -1.1 657,244 + ABIE40_RS22595 0.29 +0.9 657,245 - ABIE40_RS22595 0.29 -1.2 657,250 + ABIE40_RS22595 0.29 +0.4 657,250 + ABIE40_RS22595 0.29 -0.6 657,250 + ABIE40_RS22595 0.29 -0.2 657,250 + ABIE40_RS22595 0.29 -0.1 657,251 - ABIE40_RS22595 0.29 -1.0
Or see this region's nucleotide sequence