Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21245

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21235 and ABIE40_RS21240 are separated by 13 nucleotidesABIE40_RS21240 and ABIE40_RS21245 overlap by 4 nucleotidesABIE40_RS21245 and ABIE40_RS21250 are separated by 74 nucleotides ABIE40_RS21235: ABIE40_RS21235 - Gfo/Idh/MocA family oxidoreductase, at 361,830 to 362,987 _RS21235 ABIE40_RS21240: ABIE40_RS21240 - sugar ABC transporter permease, at 363,001 to 363,885 _RS21240 ABIE40_RS21245: ABIE40_RS21245 - carbohydrate ABC transporter permease, at 363,882 to 364,739 _RS21245 ABIE40_RS21250: ABIE40_RS21250 - ABC transporter substrate-binding protein, at 364,814 to 366,019 _RS21250 Position (kb) 363 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 362.968 kb on + strandat 363.061 kb on + strandat 363.061 kb on + strandat 363.061 kb on + strandat 363.061 kb on + strandat 363.061 kb on + strandat 363.061 kb on + strandat 363.061 kb on + strandat 363.062 kb on - strandat 363.062 kb on - strandat 363.062 kb on - strandat 363.062 kb on - strandat 363.164 kb on - strand, within ABIE40_RS21240at 363.164 kb on - strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.373 kb on + strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.374 kb on - strand, within ABIE40_RS21240at 363.375 kb on + strand, within ABIE40_RS21240at 363.376 kb on - strand, within ABIE40_RS21240at 363.452 kb on - strand, within ABIE40_RS21240at 363.520 kb on + strand, within ABIE40_RS21240at 363.520 kb on + strand, within ABIE40_RS21240at 363.520 kb on + strand, within ABIE40_RS21240at 363.520 kb on + strand, within ABIE40_RS21240at 363.521 kb on - strand, within ABIE40_RS21240at 363.559 kb on + strand, within ABIE40_RS21240at 363.559 kb on + strand, within ABIE40_RS21240at 363.559 kb on + strand, within ABIE40_RS21240at 363.560 kb on - strand, within ABIE40_RS21240at 363.595 kb on + strand, within ABIE40_RS21240at 363.595 kb on + strand, within ABIE40_RS21240at 363.596 kb on - strand, within ABIE40_RS21240at 363.751 kb on + strand, within ABIE40_RS21240at 363.751 kb on + strand, within ABIE40_RS21240at 363.751 kb on + strand, within ABIE40_RS21240at 363.752 kb on - strand, within ABIE40_RS21240at 363.752 kb on - strand, within ABIE40_RS21240at 363.752 kb on - strand, within ABIE40_RS21240at 363.752 kb on - strand, within ABIE40_RS21240at 363.752 kb on - strand, within ABIE40_RS21240at 363.752 kb on - strand, within ABIE40_RS21240at 363.779 kb on - strand, within ABIE40_RS21240at 363.779 kb on - strand, within ABIE40_RS21240at 363.779 kb on - strand, within ABIE40_RS21240at 363.779 kb on - strand, within ABIE40_RS21240at 363.841 kb on + strandat 363.841 kb on + strandat 363.841 kb on + strandat 363.909 kb on + strandat 363.909 kb on + strandat 363.936 kb on + strandat 363.936 kb on + strandat 363.936 kb on + strandat 363.936 kb on + strandat 363.936 kb on + strandat 363.936 kb on + strandat 363.936 kb on + strandat 363.937 kb on - strandat 363.937 kb on - strandat 363.937 kb on - strandat 363.997 kb on + strand, within ABIE40_RS21245at 364.071 kb on + strand, within ABIE40_RS21245at 364.072 kb on - strand, within ABIE40_RS21245at 364.072 kb on - strand, within ABIE40_RS21245at 364.072 kb on - strand, within ABIE40_RS21245at 364.110 kb on + strand, within ABIE40_RS21245at 364.111 kb on - strand, within ABIE40_RS21245at 364.111 kb on - strand, within ABIE40_RS21245at 364.111 kb on - strand, within ABIE40_RS21245at 364.111 kb on - strand, within ABIE40_RS21245at 364.112 kb on + strand, within ABIE40_RS21245at 364.112 kb on + strand, within ABIE40_RS21245at 364.113 kb on - strand, within ABIE40_RS21245at 364.113 kb on - strand, within ABIE40_RS21245at 364.182 kb on + strand, within ABIE40_RS21245at 364.182 kb on + strand, within ABIE40_RS21245at 364.182 kb on + strand, within ABIE40_RS21245at 364.182 kb on + strand, within ABIE40_RS21245at 364.182 kb on + strand, within ABIE40_RS21245at 364.183 kb on - strand, within ABIE40_RS21245at 364.183 kb on - strand, within ABIE40_RS21245at 364.183 kb on - strand, within ABIE40_RS21245at 364.183 kb on - strand, within ABIE40_RS21245at 364.183 kb on - strand, within ABIE40_RS21245at 364.183 kb on - strand, within ABIE40_RS21245at 364.317 kb on + strand, within ABIE40_RS21245at 364.318 kb on - strand, within ABIE40_RS21245at 364.318 kb on - strand, within ABIE40_RS21245at 364.318 kb on - strand, within ABIE40_RS21245at 364.383 kb on + strand, within ABIE40_RS21245at 364.383 kb on + strand, within ABIE40_RS21245at 364.383 kb on + strand, within ABIE40_RS21245at 364.383 kb on + strand, within ABIE40_RS21245at 364.383 kb on + strand, within ABIE40_RS21245at 364.383 kb on + strand, within ABIE40_RS21245at 364.384 kb on - strand, within ABIE40_RS21245at 364.384 kb on - strand, within ABIE40_RS21245at 364.384 kb on - strand, within ABIE40_RS21245at 364.384 kb on - strand, within ABIE40_RS21245at 364.384 kb on - strand, within ABIE40_RS21245at 364.384 kb on - strand, within ABIE40_RS21245at 364.422 kb on + strand, within ABIE40_RS21245at 364.422 kb on + strand, within ABIE40_RS21245at 364.422 kb on + strand, within ABIE40_RS21245at 364.423 kb on - strand, within ABIE40_RS21245at 364.423 kb on - strand, within ABIE40_RS21245at 364.423 kb on - strand, within ABIE40_RS21245at 364.423 kb on - strand, within ABIE40_RS21245at 364.423 kb on - strand, within ABIE40_RS21245at 364.424 kb on + strand, within ABIE40_RS21245at 364.424 kb on + strand, within ABIE40_RS21245at 364.424 kb on + strand, within ABIE40_RS21245at 364.424 kb on + strand, within ABIE40_RS21245at 364.425 kb on - strand, within ABIE40_RS21245at 364.425 kb on - strand, within ABIE40_RS21245at 364.425 kb on - strand, within ABIE40_RS21245at 364.446 kb on + strand, within ABIE40_RS21245at 364.446 kb on + strand, within ABIE40_RS21245at 364.447 kb on - strand, within ABIE40_RS21245at 364.449 kb on - strand, within ABIE40_RS21245at 364.505 kb on + strand, within ABIE40_RS21245at 364.525 kb on - strand, within ABIE40_RS21245at 364.572 kb on + strand, within ABIE40_RS21245at 364.572 kb on + strand, within ABIE40_RS21245at 364.572 kb on + strand, within ABIE40_RS21245at 364.572 kb on + strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.573 kb on - strand, within ABIE40_RS21245at 364.603 kb on - strand, within ABIE40_RS21245at 364.603 kb on - strand, within ABIE40_RS21245at 364.698 kb on + strandat 364.699 kb on - strandat 364.737 kb on + strandat 364.737 kb on + strandat 364.737 kb on + strandat 364.738 kb on - strandat 364.738 kb on - strandat 364.762 kb on + strandat 364.763 kb on - strandat 364.795 kb on + strandat 364.796 kb on - strandat 364.796 kb on - strandat 364.796 kb on - strandat 364.892 kb on + strandat 364.893 kb on - strandat 364.928 kb on + strandat 364.929 kb on - strandat 364.929 kb on - strandat 364.929 kb on - strandat 364.929 kb on - strandat 364.929 kb on - strandat 365.012 kb on - strand, within ABIE40_RS21250at 365.012 kb on - strand, within ABIE40_RS21250at 365.012 kb on - strand, within ABIE40_RS21250at 365.051 kb on + strand, within ABIE40_RS21250at 365.051 kb on + strand, within ABIE40_RS21250at 365.051 kb on + strand, within ABIE40_RS21250at 365.051 kb on + strand, within ABIE40_RS21250at 365.051 kb on + strand, within ABIE40_RS21250at 365.051 kb on + strand, within ABIE40_RS21250at 365.051 kb on + strand, within ABIE40_RS21250at 365.052 kb on - strand, within ABIE40_RS21250at 365.052 kb on - strand, within ABIE40_RS21250at 365.052 kb on - strand, within ABIE40_RS21250at 365.075 kb on + strand, within ABIE40_RS21250at 365.135 kb on + strand, within ABIE40_RS21250at 365.136 kb on - strand, within ABIE40_RS21250at 365.136 kb on - strand, within ABIE40_RS21250at 365.139 kb on - strand, within ABIE40_RS21250at 365.216 kb on + strand, within ABIE40_RS21250at 365.390 kb on + strand, within ABIE40_RS21250at 365.392 kb on + strand, within ABIE40_RS21250at 365.392 kb on + strand, within ABIE40_RS21250at 365.393 kb on - strand, within ABIE40_RS21250at 365.393 kb on - strand, within ABIE40_RS21250at 365.399 kb on - strand, within ABIE40_RS21250at 365.399 kb on - strand, within ABIE40_RS21250at 365.471 kb on + strand, within ABIE40_RS21250at 365.472 kb on - strand, within ABIE40_RS21250at 365.472 kb on - strand, within ABIE40_RS21250at 365.472 kb on - strand, within ABIE40_RS21250at 365.489 kb on + strand, within ABIE40_RS21250at 365.513 kb on + strand, within ABIE40_RS21250at 365.513 kb on + strand, within ABIE40_RS21250at 365.513 kb on + strand, within ABIE40_RS21250at 365.513 kb on + strand, within ABIE40_RS21250at 365.738 kb on + strand, within ABIE40_RS21250at 365.738 kb on + strand, within ABIE40_RS21250at 365.738 kb on + strand, within ABIE40_RS21250at 365.738 kb on + strand, within ABIE40_RS21250at 365.739 kb on - strand, within ABIE40_RS21250at 365.739 kb on - strand, within ABIE40_RS21250at 365.739 kb on - strand, within ABIE40_RS21250at 365.739 kb on - strand, within ABIE40_RS21250at 365.739 kb on - strand, within ABIE40_RS21250at 365.739 kb on - strand, within ABIE40_RS21250

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
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362,968 + +1.4
363,061 + +0.8
363,061 + +0.2
363,061 + +0.0
363,061 + +0.3
363,061 + +0.6
363,061 + -2.2
363,061 + +1.8
363,062 - +0.4
363,062 - -0.6
363,062 - -1.0
363,062 - -0.2
363,164 - ABIE40_RS21240 0.18 -1.1
363,164 - ABIE40_RS21240 0.18 -1.5
363,373 + ABIE40_RS21240 0.42 -1.0
363,373 + ABIE40_RS21240 0.42 +0.6
363,373 + ABIE40_RS21240 0.42 +0.5
363,373 + ABIE40_RS21240 0.42 -1.1
363,373 + ABIE40_RS21240 0.42 +1.8
363,373 + ABIE40_RS21240 0.42 -0.9
363,373 + ABIE40_RS21240 0.42 -0.2
363,373 + ABIE40_RS21240 0.42 -0.6
363,373 + ABIE40_RS21240 0.42 +0.3
363,373 + ABIE40_RS21240 0.42 +0.3
363,373 + ABIE40_RS21240 0.42 -0.1
363,374 - ABIE40_RS21240 0.42 -1.7
363,374 - ABIE40_RS21240 0.42 +0.2
363,374 - ABIE40_RS21240 0.42 -2.1
363,374 - ABIE40_RS21240 0.42 -0.6
363,374 - ABIE40_RS21240 0.42 -2.1
363,374 - ABIE40_RS21240 0.42 -1.6
363,374 - ABIE40_RS21240 0.42 -1.6
363,374 - ABIE40_RS21240 0.42 -2.1
363,375 + ABIE40_RS21240 0.42 +0.6
363,376 - ABIE40_RS21240 0.42 -1.4
363,452 - ABIE40_RS21240 0.51 -1.8
363,520 + ABIE40_RS21240 0.59 -1.0
363,520 + ABIE40_RS21240 0.59 -0.8
363,520 + ABIE40_RS21240 0.59 -0.7
363,520 + ABIE40_RS21240 0.59 +0.1
363,521 - ABIE40_RS21240 0.59 +1.3
363,559 + ABIE40_RS21240 0.63 -2.1
363,559 + ABIE40_RS21240 0.63 -0.8
363,559 + ABIE40_RS21240 0.63 -0.6
363,560 - ABIE40_RS21240 0.63 -0.6
363,595 + ABIE40_RS21240 0.67 -0.2
363,595 + ABIE40_RS21240 0.67 -1.2
363,596 - ABIE40_RS21240 0.67 -0.6
363,751 + ABIE40_RS21240 0.85 +0.8
363,751 + ABIE40_RS21240 0.85 +0.8
363,751 + ABIE40_RS21240 0.85 -1.2
363,752 - ABIE40_RS21240 0.85 -1.0
363,752 - ABIE40_RS21240 0.85 -0.4
363,752 - ABIE40_RS21240 0.85 -1.2
363,752 - ABIE40_RS21240 0.85 -0.5
363,752 - ABIE40_RS21240 0.85 -0.9
363,752 - ABIE40_RS21240 0.85 +0.2
363,779 - ABIE40_RS21240 0.88 +0.0
363,779 - ABIE40_RS21240 0.88 +0.8
363,779 - ABIE40_RS21240 0.88 -0.7
363,779 - ABIE40_RS21240 0.88 -0.6
363,841 + -0.0
363,841 + -0.4
363,841 + +1.0
363,909 + -0.6
363,909 + -2.5
363,936 + +0.4
363,936 + -0.6
363,936 + +0.8
363,936 + -3.3
363,936 + -0.4
363,936 + -1.6
363,936 + -0.2
363,937 - +0.2
363,937 - +0.2
363,937 - +1.1
363,997 + ABIE40_RS21245 0.13 -0.0
364,071 + ABIE40_RS21245 0.22 +0.6
364,072 - ABIE40_RS21245 0.22 +0.4
364,072 - ABIE40_RS21245 0.22 +0.5
364,072 - ABIE40_RS21245 0.22 +0.5
364,110 + ABIE40_RS21245 0.27 +1.2
364,111 - ABIE40_RS21245 0.27 -2.0
364,111 - ABIE40_RS21245 0.27 +1.4
364,111 - ABIE40_RS21245 0.27 -0.5
364,111 - ABIE40_RS21245 0.27 +0.5
364,112 + ABIE40_RS21245 0.27 -1.2
364,112 + ABIE40_RS21245 0.27 -0.6
364,113 - ABIE40_RS21245 0.27 -0.8
364,113 - ABIE40_RS21245 0.27 -2.9
364,182 + ABIE40_RS21245 0.35 +1.0
364,182 + ABIE40_RS21245 0.35 +0.9
364,182 + ABIE40_RS21245 0.35 -2.0
364,182 + ABIE40_RS21245 0.35 +0.9
364,182 + ABIE40_RS21245 0.35 -1.3
364,183 - ABIE40_RS21245 0.35 -0.6
364,183 - ABIE40_RS21245 0.35 -0.5
364,183 - ABIE40_RS21245 0.35 +0.4
364,183 - ABIE40_RS21245 0.35 -0.2
364,183 - ABIE40_RS21245 0.35 -0.8
364,183 - ABIE40_RS21245 0.35 -0.0
364,317 + ABIE40_RS21245 0.51 -1.4
364,318 - ABIE40_RS21245 0.51 +0.5
364,318 - ABIE40_RS21245 0.51 +1.2
364,318 - ABIE40_RS21245 0.51 -0.5
364,383 + ABIE40_RS21245 0.58 +3.2
364,383 + ABIE40_RS21245 0.58 +0.3
364,383 + ABIE40_RS21245 0.58 -1.4
364,383 + ABIE40_RS21245 0.58 +0.6
364,383 + ABIE40_RS21245 0.58 +1.2
364,383 + ABIE40_RS21245 0.58 +0.6
364,384 - ABIE40_RS21245 0.59 +0.2
364,384 - ABIE40_RS21245 0.59 +0.6
364,384 - ABIE40_RS21245 0.59 -0.5
364,384 - ABIE40_RS21245 0.59 +0.4
364,384 - ABIE40_RS21245 0.59 +0.3
364,384 - ABIE40_RS21245 0.59 +1.4
364,422 + ABIE40_RS21245 0.63 -0.0
364,422 + ABIE40_RS21245 0.63 +0.3
364,422 + ABIE40_RS21245 0.63 +0.2
364,423 - ABIE40_RS21245 0.63 -0.1
364,423 - ABIE40_RS21245 0.63 +0.2
364,423 - ABIE40_RS21245 0.63 +1.8
364,423 - ABIE40_RS21245 0.63 -1.0
364,423 - ABIE40_RS21245 0.63 -0.7
364,424 + ABIE40_RS21245 0.63 -0.1
364,424 + ABIE40_RS21245 0.63 +1.1
364,424 + ABIE40_RS21245 0.63 +0.3
364,424 + ABIE40_RS21245 0.63 +1.4
364,425 - ABIE40_RS21245 0.63 +0.4
364,425 - ABIE40_RS21245 0.63 +1.0
364,425 - ABIE40_RS21245 0.63 -2.1
364,446 + ABIE40_RS21245 0.66 -0.8
364,446 + ABIE40_RS21245 0.66 +0.3
364,447 - ABIE40_RS21245 0.66 -0.6
364,449 - ABIE40_RS21245 0.66 +0.1
364,505 + ABIE40_RS21245 0.73 -0.8
364,525 - ABIE40_RS21245 0.75 -1.2
364,572 + ABIE40_RS21245 0.80 +0.6
364,572 + ABIE40_RS21245 0.80 +0.1
364,572 + ABIE40_RS21245 0.80 +1.5
364,572 + ABIE40_RS21245 0.80 +0.6
364,573 - ABIE40_RS21245 0.81 +0.2
364,573 - ABIE40_RS21245 0.81 -0.8
364,573 - ABIE40_RS21245 0.81 +0.2
364,573 - ABIE40_RS21245 0.81 -0.7
364,573 - ABIE40_RS21245 0.81 +0.7
364,573 - ABIE40_RS21245 0.81 +0.2
364,573 - ABIE40_RS21245 0.81 -0.7
364,573 - ABIE40_RS21245 0.81 +0.2
364,573 - ABIE40_RS21245 0.81 +1.2
364,603 - ABIE40_RS21245 0.84 -0.6
364,603 - ABIE40_RS21245 0.84 -1.1
364,698 + -0.6
364,699 - +1.3
364,737 + +0.0
364,737 + +0.5
364,737 + -0.3
364,738 - -2.5
364,738 - -0.1
364,762 + -0.8
364,763 - -0.0
364,795 + +2.1
364,796 - +0.0
364,796 - -0.5
364,796 - +0.8
364,892 + +0.3
364,893 - -2.2
364,928 + -0.4
364,929 - +0.4
364,929 - -3.6
364,929 - -1.3
364,929 - +4.3
364,929 - -0.1
365,012 - ABIE40_RS21250 0.16 -2.5
365,012 - ABIE40_RS21250 0.16 -1.6
365,012 - ABIE40_RS21250 0.16 -2.1
365,051 + ABIE40_RS21250 0.20 -0.7
365,051 + ABIE40_RS21250 0.20 +0.1
365,051 + ABIE40_RS21250 0.20 -1.7
365,051 + ABIE40_RS21250 0.20 -2.5
365,051 + ABIE40_RS21250 0.20 +0.2
365,051 + ABIE40_RS21250 0.20 -1.8
365,051 + ABIE40_RS21250 0.20 +0.1
365,052 - ABIE40_RS21250 0.20 +1.0
365,052 - ABIE40_RS21250 0.20 +0.3
365,052 - ABIE40_RS21250 0.20 -1.4
365,075 + ABIE40_RS21250 0.22 -2.3
365,135 + ABIE40_RS21250 0.27 -0.4
365,136 - ABIE40_RS21250 0.27 -1.9
365,136 - ABIE40_RS21250 0.27 -0.6
365,139 - ABIE40_RS21250 0.27 +0.5
365,216 + ABIE40_RS21250 0.33 -0.6
365,390 + ABIE40_RS21250 0.48 -0.8
365,392 + ABIE40_RS21250 0.48 +1.6
365,392 + ABIE40_RS21250 0.48 -0.4
365,393 - ABIE40_RS21250 0.48 -0.6
365,393 - ABIE40_RS21250 0.48 -0.7
365,399 - ABIE40_RS21250 0.49 -0.6
365,399 - ABIE40_RS21250 0.49 +0.0
365,471 + ABIE40_RS21250 0.54 +0.8
365,472 - ABIE40_RS21250 0.55 -1.2
365,472 - ABIE40_RS21250 0.55 +1.4
365,472 - ABIE40_RS21250 0.55 -0.2
365,489 + ABIE40_RS21250 0.56 -0.2
365,513 + ABIE40_RS21250 0.58 +0.0
365,513 + ABIE40_RS21250 0.58 -0.4
365,513 + ABIE40_RS21250 0.58 -0.9
365,513 + ABIE40_RS21250 0.58 -0.9
365,738 + ABIE40_RS21250 0.77 -1.1
365,738 + ABIE40_RS21250 0.77 +0.3
365,738 + ABIE40_RS21250 0.77 -2.0
365,738 + ABIE40_RS21250 0.77 -0.4
365,739 - ABIE40_RS21250 0.77 +0.1
365,739 - ABIE40_RS21250 0.77 +0.9
365,739 - ABIE40_RS21250 0.77 -1.3
365,739 - ABIE40_RS21250 0.77 +0.5
365,739 - ABIE40_RS21250 0.77 +1.3
365,739 - ABIE40_RS21250 0.77 +0.2

Or see this region's nucleotide sequence