Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19175 and ABIE40_RS19180 are separated by 81 nucleotides ABIE40_RS19180 and ABIE40_RS19185 are separated by 200 nucleotides ABIE40_RS19185 and ABIE40_RS19190 overlap by 11 nucleotides ABIE40_RS19190 and ABIE40_RS19195 are separated by 10 nucleotides
ABIE40_RS19175: ABIE40_RS19175 - propionyl-CoA synthetase, at 3,848,107 to 3,850,017
_RS19175
ABIE40_RS19180: ABIE40_RS19180 - YggS family pyridoxal phosphate-dependent enzyme, at 3,850,099 to 3,850,758
_RS19180
ABIE40_RS19185: ABIE40_RS19185 - leucine--tRNA ligase, at 3,850,959 to 3,853,589
_RS19185
ABIE40_RS19190: ABIE40_RS19190 - LPS assembly lipoprotein LptE, at 3,853,579 to 3,854,100
_RS19190
ABIE40_RS19195: ABIE40_RS19195 - DNA polymerase III subunit delta, at 3,854,111 to 3,855,148
_RS19195
Position (kb)
3850
3851
3852
3853
3854 Strain fitness (log2 ratio)
-1
0
1
2 at 3849.992 kb on + strand at 3849.992 kb on + strand at 3849.992 kb on + strand at 3849.993 kb on - strand at 3849.993 kb on - strand at 3850.004 kb on + strand at 3850.043 kb on + strand at 3850.043 kb on + strand at 3850.043 kb on + strand at 3850.043 kb on + strand at 3850.043 kb on + strand at 3850.043 kb on + strand at 3850.043 kb on + strand at 3850.044 kb on - strand at 3850.044 kb on - strand at 3850.044 kb on - strand at 3850.044 kb on - strand at 3850.044 kb on - strand at 3850.044 kb on - strand at 3850.044 kb on - strand at 3850.044 kb on - strand at 3850.045 kb on + strand at 3850.045 kb on + strand at 3850.046 kb on - strand at 3850.046 kb on - strand at 3850.046 kb on - strand at 3850.057 kb on - strand at 3850.167 kb on - strand, within ABIE40_RS19180 at 3850.388 kb on + strand, within ABIE40_RS19180 at 3850.388 kb on + strand, within ABIE40_RS19180 at 3850.388 kb on + strand, within ABIE40_RS19180 at 3850.764 kb on - strand at 3850.780 kb on + strand at 3850.780 kb on + strand at 3850.780 kb on + strand at 3850.780 kb on + strand at 3850.780 kb on + strand at 3850.780 kb on + strand at 3850.780 kb on + strand at 3850.780 kb on + strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.781 kb on - strand at 3850.801 kb on + strand at 3850.802 kb on - strand at 3850.896 kb on + strand at 3850.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 3,849,992 + -1.5 3,849,992 + -0.6 3,849,992 + +1.3 3,849,993 - +0.2 3,849,993 - +1.1 3,850,004 + +0.2 3,850,043 + +0.8 3,850,043 + -0.5 3,850,043 + -0.9 3,850,043 + -1.5 3,850,043 + -0.2 3,850,043 + +2.1 3,850,043 + +0.6 3,850,044 - -0.0 3,850,044 - +0.9 3,850,044 - -0.7 3,850,044 - -0.4 3,850,044 - +0.5 3,850,044 - -0.2 3,850,044 - +0.3 3,850,044 - +0.0 3,850,045 + -0.5 3,850,045 + -0.0 3,850,046 - +1.1 3,850,046 - +1.6 3,850,046 - +0.5 3,850,057 - -0.5 3,850,167 - ABIE40_RS19180 0.10 -0.2 3,850,388 + ABIE40_RS19180 0.44 +0.9 3,850,388 + ABIE40_RS19180 0.44 -0.7 3,850,388 + ABIE40_RS19180 0.44 +2.1 3,850,764 - +0.2 3,850,780 + +1.1 3,850,780 + -0.7 3,850,780 + -0.0 3,850,780 + +0.5 3,850,780 + -1.2 3,850,780 + +0.2 3,850,780 + -1.1 3,850,780 + -1.1 3,850,781 - -0.4 3,850,781 - +1.1 3,850,781 - -0.3 3,850,781 - +1.7 3,850,781 - +1.2 3,850,781 - +0.4 3,850,781 - +0.9 3,850,781 - -0.1 3,850,781 - +1.2 3,850,801 + -0.9 3,850,802 - +0.6 3,850,896 + +1.6 3,850,896 + +0.6
Or see this region's nucleotide sequence