Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19185

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19175 and ABIE40_RS19180 are separated by 81 nucleotidesABIE40_RS19180 and ABIE40_RS19185 are separated by 200 nucleotidesABIE40_RS19185 and ABIE40_RS19190 overlap by 11 nucleotidesABIE40_RS19190 and ABIE40_RS19195 are separated by 10 nucleotides ABIE40_RS19175: ABIE40_RS19175 - propionyl-CoA synthetase, at 3,848,107 to 3,850,017 _RS19175 ABIE40_RS19180: ABIE40_RS19180 - YggS family pyridoxal phosphate-dependent enzyme, at 3,850,099 to 3,850,758 _RS19180 ABIE40_RS19185: ABIE40_RS19185 - leucine--tRNA ligase, at 3,850,959 to 3,853,589 _RS19185 ABIE40_RS19190: ABIE40_RS19190 - LPS assembly lipoprotein LptE, at 3,853,579 to 3,854,100 _RS19190 ABIE40_RS19195: ABIE40_RS19195 - DNA polymerase III subunit delta, at 3,854,111 to 3,855,148 _RS19195 Position (kb) 3850 3851 3852 3853 3854Strain fitness (log2 ratio) -1 0 1 2at 3849.992 kb on + strandat 3849.992 kb on + strandat 3849.992 kb on + strandat 3849.993 kb on - strandat 3849.993 kb on - strandat 3850.004 kb on + strandat 3850.043 kb on + strandat 3850.043 kb on + strandat 3850.043 kb on + strandat 3850.043 kb on + strandat 3850.043 kb on + strandat 3850.043 kb on + strandat 3850.043 kb on + strandat 3850.044 kb on - strandat 3850.044 kb on - strandat 3850.044 kb on - strandat 3850.044 kb on - strandat 3850.044 kb on - strandat 3850.044 kb on - strandat 3850.044 kb on - strandat 3850.044 kb on - strandat 3850.045 kb on + strandat 3850.045 kb on + strandat 3850.046 kb on - strandat 3850.046 kb on - strandat 3850.046 kb on - strandat 3850.057 kb on - strandat 3850.167 kb on - strand, within ABIE40_RS19180at 3850.388 kb on + strand, within ABIE40_RS19180at 3850.388 kb on + strand, within ABIE40_RS19180at 3850.388 kb on + strand, within ABIE40_RS19180at 3850.764 kb on - strandat 3850.780 kb on + strandat 3850.780 kb on + strandat 3850.780 kb on + strandat 3850.780 kb on + strandat 3850.780 kb on + strandat 3850.780 kb on + strandat 3850.780 kb on + strandat 3850.780 kb on + strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.781 kb on - strandat 3850.801 kb on + strandat 3850.802 kb on - strandat 3850.896 kb on + strandat 3850.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
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3,849,992 + -1.5
3,849,992 + -0.6
3,849,992 + +1.3
3,849,993 - +0.2
3,849,993 - +1.1
3,850,004 + +0.2
3,850,043 + +0.8
3,850,043 + -0.5
3,850,043 + -0.9
3,850,043 + -1.5
3,850,043 + -0.2
3,850,043 + +2.1
3,850,043 + +0.6
3,850,044 - -0.0
3,850,044 - +0.9
3,850,044 - -0.7
3,850,044 - -0.4
3,850,044 - +0.5
3,850,044 - -0.2
3,850,044 - +0.3
3,850,044 - +0.0
3,850,045 + -0.5
3,850,045 + -0.0
3,850,046 - +1.1
3,850,046 - +1.6
3,850,046 - +0.5
3,850,057 - -0.5
3,850,167 - ABIE40_RS19180 0.10 -0.2
3,850,388 + ABIE40_RS19180 0.44 +0.9
3,850,388 + ABIE40_RS19180 0.44 -0.7
3,850,388 + ABIE40_RS19180 0.44 +2.1
3,850,764 - +0.2
3,850,780 + +1.1
3,850,780 + -0.7
3,850,780 + -0.0
3,850,780 + +0.5
3,850,780 + -1.2
3,850,780 + +0.2
3,850,780 + -1.1
3,850,780 + -1.1
3,850,781 - -0.4
3,850,781 - +1.1
3,850,781 - -0.3
3,850,781 - +1.7
3,850,781 - +1.2
3,850,781 - +0.4
3,850,781 - +0.9
3,850,781 - -0.1
3,850,781 - +1.2
3,850,801 + -0.9
3,850,802 - +0.6
3,850,896 + +1.6
3,850,896 + +0.6

Or see this region's nucleotide sequence