Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03610 and ABIE40_RS03615 overlap by 1 nucleotides ABIE40_RS03615 and ABIE40_RS03620 overlap by 4 nucleotides ABIE40_RS03620 and ABIE40_RS03625 are separated by 183 nucleotides ABIE40_RS03625 and ABIE40_RS03630 are separated by 71 nucleotides
ABIE40_RS03610: ABIE40_RS03610 - hypothetical protein, at 716,338 to 716,862
_RS03610
ABIE40_RS03615: ABIE40_RS03615 - TadE/TadG family type IV pilus assembly protein, at 716,862 to 717,380
_RS03615
ABIE40_RS03620: ABIE40_RS03620 - TadE/TadG family type IV pilus assembly protein, at 717,377 to 718,681
_RS03620
ABIE40_RS03625: ABIE40_RS03625 - DUF305 domain-containing protein, at 718,865 to 719,221
_RS03625
ABIE40_RS03630: ABIE40_RS03630 - DUF2946 family protein, at 719,293 to 719,658
_RS03630
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 716.435 kb on + strand, within ABIE40_RS03610 at 716.436 kb on - strand, within ABIE40_RS03610 at 716.436 kb on - strand, within ABIE40_RS03610 at 716.436 kb on - strand, within ABIE40_RS03610 at 716.436 kb on - strand, within ABIE40_RS03610 at 716.456 kb on + strand, within ABIE40_RS03610 at 716.456 kb on + strand, within ABIE40_RS03610 at 716.456 kb on + strand, within ABIE40_RS03610 at 716.456 kb on + strand, within ABIE40_RS03610 at 716.456 kb on + strand, within ABIE40_RS03610 at 716.457 kb on - strand, within ABIE40_RS03610 at 716.457 kb on - strand, within ABIE40_RS03610 at 716.457 kb on - strand, within ABIE40_RS03610 at 716.457 kb on - strand, within ABIE40_RS03610 at 716.457 kb on - strand, within ABIE40_RS03610 at 716.457 kb on - strand, within ABIE40_RS03610 at 716.457 kb on - strand, within ABIE40_RS03610 at 716.561 kb on + strand, within ABIE40_RS03610 at 716.561 kb on + strand, within ABIE40_RS03610 at 716.561 kb on + strand, within ABIE40_RS03610 at 716.562 kb on - strand, within ABIE40_RS03610 at 716.562 kb on - strand, within ABIE40_RS03610 at 716.645 kb on + strand, within ABIE40_RS03610 at 716.645 kb on + strand, within ABIE40_RS03610 at 716.646 kb on - strand, within ABIE40_RS03610 at 716.646 kb on - strand, within ABIE40_RS03610 at 716.649 kb on + strand, within ABIE40_RS03610 at 716.649 kb on + strand, within ABIE40_RS03610 at 716.649 kb on + strand, within ABIE40_RS03610 at 716.649 kb on + strand, within ABIE40_RS03610 at 716.650 kb on - strand, within ABIE40_RS03610 at 716.650 kb on - strand, within ABIE40_RS03610 at 716.732 kb on + strand, within ABIE40_RS03610 at 716.732 kb on + strand, within ABIE40_RS03610 at 716.733 kb on - strand, within ABIE40_RS03610 at 716.733 kb on - strand, within ABIE40_RS03610 at 716.733 kb on - strand, within ABIE40_RS03610 at 716.733 kb on - strand, within ABIE40_RS03610 at 716.733 kb on - strand, within ABIE40_RS03610 at 716.777 kb on + strand, within ABIE40_RS03610 at 716.915 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.974 kb on + strand, within ABIE40_RS03615 at 716.975 kb on - strand, within ABIE40_RS03615 at 716.975 kb on - strand, within ABIE40_RS03615 at 716.975 kb on - strand, within ABIE40_RS03615 at 717.019 kb on + strand, within ABIE40_RS03615 at 717.019 kb on + strand, within ABIE40_RS03615 at 717.019 kb on + strand, within ABIE40_RS03615 at 717.019 kb on + strand, within ABIE40_RS03615 at 717.020 kb on - strand, within ABIE40_RS03615 at 717.020 kb on - strand, within ABIE40_RS03615 at 717.020 kb on - strand, within ABIE40_RS03615 at 717.020 kb on - strand, within ABIE40_RS03615 at 717.181 kb on + strand, within ABIE40_RS03615 at 717.181 kb on + strand, within ABIE40_RS03615 at 717.182 kb on - strand, within ABIE40_RS03615 at 717.457 kb on - strand at 717.459 kb on + strand at 717.460 kb on - strand at 717.460 kb on - strand at 717.460 kb on - strand at 717.645 kb on + strand, within ABIE40_RS03620 at 717.645 kb on + strand, within ABIE40_RS03620 at 717.646 kb on - strand, within ABIE40_RS03620 at 717.648 kb on + strand, within ABIE40_RS03620 at 717.660 kb on + strand, within ABIE40_RS03620 at 717.816 kb on + strand, within ABIE40_RS03620 at 717.816 kb on + strand, within ABIE40_RS03620 at 717.816 kb on + strand, within ABIE40_RS03620 at 717.816 kb on + strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.817 kb on - strand, within ABIE40_RS03620 at 717.889 kb on - strand, within ABIE40_RS03620 at 717.889 kb on - strand, within ABIE40_RS03620 at 717.889 kb on - strand, within ABIE40_RS03620 at 717.889 kb on - strand, within ABIE40_RS03620 at 717.889 kb on - strand, within ABIE40_RS03620 at 717.910 kb on - strand, within ABIE40_RS03620 at 717.910 kb on - strand, within ABIE40_RS03620 at 717.910 kb on - strand, within ABIE40_RS03620 at 717.910 kb on - strand, within ABIE40_RS03620 at 717.966 kb on + strand, within ABIE40_RS03620 at 717.967 kb on - strand, within ABIE40_RS03620 at 718.129 kb on - strand, within ABIE40_RS03620 at 718.152 kb on + strand, within ABIE40_RS03620 at 718.152 kb on + strand, within ABIE40_RS03620 at 718.153 kb on - strand, within ABIE40_RS03620 at 718.219 kb on + strand, within ABIE40_RS03620 at 718.219 kb on + strand, within ABIE40_RS03620 at 718.220 kb on - strand, within ABIE40_RS03620 at 718.359 kb on + strand, within ABIE40_RS03620 at 718.359 kb on + strand, within ABIE40_RS03620 at 718.359 kb on + strand, within ABIE40_RS03620 at 718.359 kb on + strand, within ABIE40_RS03620 at 718.360 kb on - strand, within ABIE40_RS03620 at 718.360 kb on - strand, within ABIE40_RS03620 at 718.360 kb on - strand, within ABIE40_RS03620 at 718.360 kb on - strand, within ABIE40_RS03620 at 718.434 kb on + strand, within ABIE40_RS03620 at 718.435 kb on - strand, within ABIE40_RS03620 at 718.465 kb on + strand, within ABIE40_RS03620 at 718.465 kb on + strand, within ABIE40_RS03620 at 718.466 kb on - strand, within ABIE40_RS03620 at 718.466 kb on - strand, within ABIE40_RS03620 at 718.466 kb on - strand, within ABIE40_RS03620 at 718.466 kb on - strand, within ABIE40_RS03620 at 718.555 kb on - strand at 718.555 kb on - strand at 718.691 kb on + strand at 718.747 kb on + strand at 718.748 kb on - strand at 718.750 kb on + strand at 718.751 kb on - strand at 718.870 kb on + strand at 718.968 kb on + strand, within ABIE40_RS03625 at 718.968 kb on + strand, within ABIE40_RS03625 at 719.143 kb on + strand, within ABIE40_RS03625 at 719.143 kb on + strand, within ABIE40_RS03625 at 719.143 kb on + strand, within ABIE40_RS03625 at 719.143 kb on + strand, within ABIE40_RS03625 at 719.143 kb on + strand, within ABIE40_RS03625 at 719.143 kb on + strand, within ABIE40_RS03625 at 719.143 kb on + strand, within ABIE40_RS03625 at 719.144 kb on - strand, within ABIE40_RS03625 at 719.144 kb on - strand, within ABIE40_RS03625 at 719.144 kb on - strand, within ABIE40_RS03625 at 719.144 kb on - strand, within ABIE40_RS03625 at 719.144 kb on - strand, within ABIE40_RS03625 at 719.144 kb on - strand, within ABIE40_RS03625 at 719.200 kb on + strand at 719.200 kb on + strand at 719.200 kb on + strand at 719.201 kb on - strand at 719.216 kb on - strand at 719.216 kb on - strand at 719.216 kb on - strand at 719.278 kb on + strand at 719.279 kb on - strand at 719.429 kb on + strand, within ABIE40_RS03630 at 719.429 kb on + strand, within ABIE40_RS03630 at 719.430 kb on - strand, within ABIE40_RS03630 at 719.508 kb on + strand, within ABIE40_RS03630 at 719.508 kb on + strand, within ABIE40_RS03630 at 719.508 kb on + strand, within ABIE40_RS03630 at 719.508 kb on + strand, within ABIE40_RS03630 at 719.508 kb on + strand, within ABIE40_RS03630 at 719.509 kb on - strand, within ABIE40_RS03630 at 719.509 kb on - strand, within ABIE40_RS03630 at 719.509 kb on - strand, within ABIE40_RS03630 at 719.509 kb on - strand, within ABIE40_RS03630 at 719.521 kb on - strand, within ABIE40_RS03630 at 719.629 kb on + strand at 719.629 kb on + strand at 719.629 kb on + strand at 719.629 kb on + strand at 719.630 kb on - strand at 719.669 kb on + strand at 719.669 kb on + strand at 719.669 kb on + strand at 719.669 kb on + strand at 719.669 kb on + strand at 719.670 kb on - strand at 719.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 716,435 + ABIE40_RS03610 0.18 -0.9 716,436 - ABIE40_RS03610 0.19 -0.4 716,436 - ABIE40_RS03610 0.19 +1.2 716,436 - ABIE40_RS03610 0.19 -1.0 716,436 - ABIE40_RS03610 0.19 +0.6 716,456 + ABIE40_RS03610 0.22 -0.2 716,456 + ABIE40_RS03610 0.22 +0.6 716,456 + ABIE40_RS03610 0.22 -2.2 716,456 + ABIE40_RS03610 0.22 -0.4 716,456 + ABIE40_RS03610 0.22 -0.6 716,457 - ABIE40_RS03610 0.23 +0.3 716,457 - ABIE40_RS03610 0.23 +1.0 716,457 - ABIE40_RS03610 0.23 -0.1 716,457 - ABIE40_RS03610 0.23 -1.4 716,457 - ABIE40_RS03610 0.23 +0.6 716,457 - ABIE40_RS03610 0.23 +1.1 716,457 - ABIE40_RS03610 0.23 -0.2 716,561 + ABIE40_RS03610 0.42 +0.0 716,561 + ABIE40_RS03610 0.42 -0.4 716,561 + ABIE40_RS03610 0.42 -1.3 716,562 - ABIE40_RS03610 0.43 -0.3 716,562 - ABIE40_RS03610 0.43 -0.9 716,645 + ABIE40_RS03610 0.58 -0.9 716,645 + ABIE40_RS03610 0.58 +1.9 716,646 - ABIE40_RS03610 0.59 +0.3 716,646 - ABIE40_RS03610 0.59 -0.1 716,649 + ABIE40_RS03610 0.59 -1.0 716,649 + ABIE40_RS03610 0.59 -3.5 716,649 + ABIE40_RS03610 0.59 -1.2 716,649 + ABIE40_RS03610 0.59 -0.8 716,650 - ABIE40_RS03610 0.59 -0.0 716,650 - ABIE40_RS03610 0.59 -0.3 716,732 + ABIE40_RS03610 0.75 +0.3 716,732 + ABIE40_RS03610 0.75 +0.3 716,733 - ABIE40_RS03610 0.75 +0.6 716,733 - ABIE40_RS03610 0.75 -0.3 716,733 - ABIE40_RS03610 0.75 -1.1 716,733 - ABIE40_RS03610 0.75 +0.5 716,733 - ABIE40_RS03610 0.75 -0.4 716,777 + ABIE40_RS03610 0.84 -0.6 716,915 + ABIE40_RS03615 0.10 -1.9 716,974 + ABIE40_RS03615 0.22 -0.3 716,974 + ABIE40_RS03615 0.22 -1.2 716,974 + ABIE40_RS03615 0.22 -0.8 716,974 + ABIE40_RS03615 0.22 -0.5 716,974 + ABIE40_RS03615 0.22 +0.5 716,974 + ABIE40_RS03615 0.22 +0.6 716,974 + ABIE40_RS03615 0.22 +1.6 716,974 + ABIE40_RS03615 0.22 -0.1 716,974 + ABIE40_RS03615 0.22 -1.5 716,975 - ABIE40_RS03615 0.22 -0.9 716,975 - ABIE40_RS03615 0.22 -0.7 716,975 - ABIE40_RS03615 0.22 -2.5 717,019 + ABIE40_RS03615 0.30 -0.3 717,019 + ABIE40_RS03615 0.30 +0.0 717,019 + ABIE40_RS03615 0.30 -0.2 717,019 + ABIE40_RS03615 0.30 -1.5 717,020 - ABIE40_RS03615 0.30 -2.5 717,020 - ABIE40_RS03615 0.30 -2.0 717,020 - ABIE40_RS03615 0.30 -2.4 717,020 - ABIE40_RS03615 0.30 -0.2 717,181 + ABIE40_RS03615 0.61 -0.1 717,181 + ABIE40_RS03615 0.61 -0.6 717,182 - ABIE40_RS03615 0.62 +1.8 717,457 - +0.6 717,459 + -0.3 717,460 - +0.2 717,460 - -0.7 717,460 - -1.1 717,645 + ABIE40_RS03620 0.21 -0.2 717,645 + ABIE40_RS03620 0.21 +0.0 717,646 - ABIE40_RS03620 0.21 -2.7 717,648 + ABIE40_RS03620 0.21 -0.4 717,660 + ABIE40_RS03620 0.22 -1.3 717,816 + ABIE40_RS03620 0.34 -3.7 717,816 + ABIE40_RS03620 0.34 -0.9 717,816 + ABIE40_RS03620 0.34 +1.7 717,816 + ABIE40_RS03620 0.34 -1.8 717,817 - ABIE40_RS03620 0.34 -0.4 717,817 - ABIE40_RS03620 0.34 -1.3 717,817 - ABIE40_RS03620 0.34 -0.9 717,817 - ABIE40_RS03620 0.34 +0.6 717,817 - ABIE40_RS03620 0.34 +0.4 717,817 - ABIE40_RS03620 0.34 -0.8 717,817 - ABIE40_RS03620 0.34 +0.6 717,817 - ABIE40_RS03620 0.34 -0.6 717,817 - ABIE40_RS03620 0.34 -0.4 717,889 - ABIE40_RS03620 0.39 +0.3 717,889 - ABIE40_RS03620 0.39 +0.7 717,889 - ABIE40_RS03620 0.39 -0.7 717,889 - ABIE40_RS03620 0.39 -0.3 717,889 - ABIE40_RS03620 0.39 -0.5 717,910 - ABIE40_RS03620 0.41 +0.6 717,910 - ABIE40_RS03620 0.41 +0.5 717,910 - ABIE40_RS03620 0.41 -0.5 717,910 - ABIE40_RS03620 0.41 +0.2 717,966 + ABIE40_RS03620 0.45 -3.0 717,967 - ABIE40_RS03620 0.45 -0.5 718,129 - ABIE40_RS03620 0.58 -0.1 718,152 + ABIE40_RS03620 0.59 -0.0 718,152 + ABIE40_RS03620 0.59 +0.3 718,153 - ABIE40_RS03620 0.59 -0.7 718,219 + ABIE40_RS03620 0.65 -2.6 718,219 + ABIE40_RS03620 0.65 +2.2 718,220 - ABIE40_RS03620 0.65 -2.8 718,359 + ABIE40_RS03620 0.75 -0.1 718,359 + ABIE40_RS03620 0.75 -0.5 718,359 + ABIE40_RS03620 0.75 +0.9 718,359 + ABIE40_RS03620 0.75 -0.7 718,360 - ABIE40_RS03620 0.75 -0.2 718,360 - ABIE40_RS03620 0.75 -1.1 718,360 - ABIE40_RS03620 0.75 -0.1 718,360 - ABIE40_RS03620 0.75 -0.1 718,434 + ABIE40_RS03620 0.81 -1.0 718,435 - ABIE40_RS03620 0.81 -2.4 718,465 + ABIE40_RS03620 0.83 -0.9 718,465 + ABIE40_RS03620 0.83 -0.7 718,466 - ABIE40_RS03620 0.83 -0.3 718,466 - ABIE40_RS03620 0.83 +0.1 718,466 - ABIE40_RS03620 0.83 +0.1 718,466 - ABIE40_RS03620 0.83 +0.5 718,555 - +1.0 718,555 - +0.6 718,691 + -1.3 718,747 + -1.7 718,748 - -0.8 718,750 + -0.7 718,751 - -1.8 718,870 + -0.4 718,968 + ABIE40_RS03625 0.29 -0.6 718,968 + ABIE40_RS03625 0.29 +0.9 719,143 + ABIE40_RS03625 0.78 +0.9 719,143 + ABIE40_RS03625 0.78 +0.1 719,143 + ABIE40_RS03625 0.78 -0.9 719,143 + ABIE40_RS03625 0.78 -0.8 719,143 + ABIE40_RS03625 0.78 +1.4 719,143 + ABIE40_RS03625 0.78 -0.9 719,143 + ABIE40_RS03625 0.78 +0.3 719,144 - ABIE40_RS03625 0.78 +0.1 719,144 - ABIE40_RS03625 0.78 +0.0 719,144 - ABIE40_RS03625 0.78 -0.0 719,144 - ABIE40_RS03625 0.78 +0.0 719,144 - ABIE40_RS03625 0.78 +1.1 719,144 - ABIE40_RS03625 0.78 +0.7 719,200 + +0.6 719,200 + +1.0 719,200 + -0.4 719,201 - -0.1 719,216 - -0.2 719,216 - -0.3 719,216 - -0.4 719,278 + -0.9 719,279 - +0.4 719,429 + ABIE40_RS03630 0.37 +1.0 719,429 + ABIE40_RS03630 0.37 -0.7 719,430 - ABIE40_RS03630 0.37 -2.7 719,508 + ABIE40_RS03630 0.59 -0.9 719,508 + ABIE40_RS03630 0.59 -0.4 719,508 + ABIE40_RS03630 0.59 +0.9 719,508 + ABIE40_RS03630 0.59 +1.0 719,508 + ABIE40_RS03630 0.59 +0.8 719,509 - ABIE40_RS03630 0.59 +0.3 719,509 - ABIE40_RS03630 0.59 +0.4 719,509 - ABIE40_RS03630 0.59 +3.2 719,509 - ABIE40_RS03630 0.59 -0.8 719,521 - ABIE40_RS03630 0.62 +0.6 719,629 + -0.3 719,629 + -1.3 719,629 + -1.0 719,629 + -1.0 719,630 - +0.3 719,669 + -0.9 719,669 + -2.1 719,669 + -0.4 719,669 + -1.7 719,669 + -0.7 719,670 - -0.9 719,670 - +0.5
Or see this region's nucleotide sequence