Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30855 and ABIE40_RS30860 are separated by 225 nucleotides ABIE40_RS30860 and ABIE40_RS30865 are separated by 772 nucleotides ABIE40_RS30865 and ABIE40_RS30870 overlap by 37 nucleotides
ABIE40_RS30855: ABIE40_RS30855 - DEAD/DEAH box helicase, at 862,700 to 865,693
_RS30855
ABIE40_RS30860: ABIE40_RS30860 - SDR family oxidoreductase, at 865,919 to 866,788
_RS30860
ABIE40_RS30865: ABIE40_RS30865 - CheR family methyltransferase, at 867,561 to 867,689
_RS30865
ABIE40_RS30870: ABIE40_RS30870 - hypothetical protein, at 867,653 to 868,021
_RS30870
Position (kb) 865
866
867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 864.938 kb on - strand, within ABIE40_RS30855 at 864.946 kb on + strand, within ABIE40_RS30855 at 865.031 kb on + strand, within ABIE40_RS30855 at 865.083 kb on + strand, within ABIE40_RS30855 at 865.083 kb on + strand, within ABIE40_RS30855 at 865.083 kb on + strand, within ABIE40_RS30855 at 865.084 kb on - strand, within ABIE40_RS30855 at 865.084 kb on - strand, within ABIE40_RS30855 at 865.087 kb on + strand, within ABIE40_RS30855 at 865.088 kb on - strand, within ABIE40_RS30855 at 865.088 kb on - strand, within ABIE40_RS30855 at 865.088 kb on - strand, within ABIE40_RS30855 at 865.217 kb on + strand, within ABIE40_RS30855 at 865.325 kb on + strand, within ABIE40_RS30855 at 865.449 kb on + strand at 865.450 kb on - strand at 865.451 kb on + strand at 865.585 kb on + strand at 865.585 kb on + strand at 865.585 kb on + strand at 865.692 kb on - strand at 865.807 kb on + strand at 865.857 kb on + strand at 865.857 kb on + strand at 865.968 kb on + strand at 865.969 kb on - strand at 865.969 kb on - strand at 865.969 kb on - strand at 865.994 kb on + strand at 865.994 kb on + strand at 865.995 kb on - strand at 865.995 kb on - strand at 865.995 kb on - strand at 865.995 kb on - strand at 865.998 kb on + strand at 865.999 kb on - strand at 866.205 kb on + strand, within ABIE40_RS30860 at 866.317 kb on - strand, within ABIE40_RS30860 at 866.320 kb on + strand, within ABIE40_RS30860 at 866.321 kb on - strand, within ABIE40_RS30860 at 866.321 kb on - strand, within ABIE40_RS30860 at 866.321 kb on - strand, within ABIE40_RS30860 at 866.368 kb on + strand, within ABIE40_RS30860 at 866.369 kb on - strand, within ABIE40_RS30860 at 866.376 kb on + strand, within ABIE40_RS30860 at 866.376 kb on + strand, within ABIE40_RS30860 at 866.376 kb on + strand, within ABIE40_RS30860 at 866.376 kb on + strand, within ABIE40_RS30860 at 866.376 kb on + strand, within ABIE40_RS30860 at 866.376 kb on + strand, within ABIE40_RS30860 at 866.377 kb on - strand, within ABIE40_RS30860 at 866.377 kb on - strand, within ABIE40_RS30860 at 866.377 kb on - strand, within ABIE40_RS30860 at 866.377 kb on - strand, within ABIE40_RS30860 at 866.377 kb on - strand, within ABIE40_RS30860 at 866.473 kb on + strand, within ABIE40_RS30860 at 866.563 kb on - strand, within ABIE40_RS30860 at 866.618 kb on + strand, within ABIE40_RS30860 at 866.618 kb on + strand, within ABIE40_RS30860 at 866.619 kb on - strand, within ABIE40_RS30860 at 866.679 kb on + strand, within ABIE40_RS30860 at 866.754 kb on + strand at 866.774 kb on + strand at 866.774 kb on + strand at 866.775 kb on - strand at 866.775 kb on - strand at 866.775 kb on - strand at 866.775 kb on - strand at 866.802 kb on - strand at 866.802 kb on - strand at 866.893 kb on - strand at 866.893 kb on - strand at 866.991 kb on + strand at 866.992 kb on - strand at 866.992 kb on - strand at 867.064 kb on + strand at 867.065 kb on - strand at 867.178 kb on + strand at 867.267 kb on + strand at 867.267 kb on + strand at 867.364 kb on - strand at 867.391 kb on - strand at 867.525 kb on + strand at 867.526 kb on - strand at 867.574 kb on + strand, within ABIE40_RS30865 at 867.574 kb on + strand, within ABIE40_RS30865 at 867.600 kb on - strand, within ABIE40_RS30865 at 867.699 kb on - strand, within ABIE40_RS30870
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 864,938 - ABIE40_RS30855 0.75 -1.2 864,946 + ABIE40_RS30855 0.75 +0.2 865,031 + ABIE40_RS30855 0.78 -0.4 865,083 + ABIE40_RS30855 0.80 -0.5 865,083 + ABIE40_RS30855 0.80 +0.9 865,083 + ABIE40_RS30855 0.80 -0.7 865,084 - ABIE40_RS30855 0.80 +0.3 865,084 - ABIE40_RS30855 0.80 -0.0 865,087 + ABIE40_RS30855 0.80 -1.6 865,088 - ABIE40_RS30855 0.80 -1.0 865,088 - ABIE40_RS30855 0.80 -0.7 865,088 - ABIE40_RS30855 0.80 -2.5 865,217 + ABIE40_RS30855 0.84 -0.4 865,325 + ABIE40_RS30855 0.88 -0.5 865,449 + +0.3 865,450 - +1.5 865,451 + +1.3 865,585 + +0.7 865,585 + -1.3 865,585 + -1.1 865,692 - +2.3 865,807 + -0.0 865,857 + -2.9 865,857 + +0.6 865,968 + -1.3 865,969 - +1.3 865,969 - +0.4 865,969 - -0.4 865,994 + -1.2 865,994 + -0.3 865,995 - +0.1 865,995 - +0.3 865,995 - -0.9 865,995 - +0.0 865,998 + +1.7 865,999 - +1.5 866,205 + ABIE40_RS30860 0.33 +0.7 866,317 - ABIE40_RS30860 0.46 -0.7 866,320 + ABIE40_RS30860 0.46 +1.3 866,321 - ABIE40_RS30860 0.46 -2.0 866,321 - ABIE40_RS30860 0.46 +1.0 866,321 - ABIE40_RS30860 0.46 +0.8 866,368 + ABIE40_RS30860 0.52 -1.1 866,369 - ABIE40_RS30860 0.52 -1.2 866,376 + ABIE40_RS30860 0.53 -0.9 866,376 + ABIE40_RS30860 0.53 -0.0 866,376 + ABIE40_RS30860 0.53 -1.1 866,376 + ABIE40_RS30860 0.53 -2.0 866,376 + ABIE40_RS30860 0.53 -1.8 866,376 + ABIE40_RS30860 0.53 -0.3 866,377 - ABIE40_RS30860 0.53 -0.9 866,377 - ABIE40_RS30860 0.53 -1.5 866,377 - ABIE40_RS30860 0.53 -0.2 866,377 - ABIE40_RS30860 0.53 +0.1 866,377 - ABIE40_RS30860 0.53 -1.3 866,473 + ABIE40_RS30860 0.64 -0.8 866,563 - ABIE40_RS30860 0.74 +2.5 866,618 + ABIE40_RS30860 0.80 +0.7 866,618 + ABIE40_RS30860 0.80 -1.7 866,619 - ABIE40_RS30860 0.80 -0.5 866,679 + ABIE40_RS30860 0.87 -0.9 866,754 + +0.4 866,774 + +3.3 866,774 + +0.4 866,775 - -0.9 866,775 - +0.4 866,775 - -1.0 866,775 - -0.5 866,802 - +1.0 866,802 - +2.5 866,893 - -1.0 866,893 - -1.3 866,991 + +0.9 866,992 - -1.1 866,992 - -1.9 867,064 + -0.8 867,065 - -1.1 867,178 + +0.3 867,267 + -1.5 867,267 + +0.7 867,364 - -0.9 867,391 - +0.6 867,525 + +2.3 867,526 - -2.1 867,574 + ABIE40_RS30865 0.10 +1.3 867,574 + ABIE40_RS30865 0.10 -0.3 867,600 - ABIE40_RS30865 0.30 +0.7 867,699 - ABIE40_RS30870 0.12 -2.1
Or see this region's nucleotide sequence