Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS26590 and ABIE40_RS26595 are separated by 224 nucleotides ABIE40_RS26595 and ABIE40_RS26600 are separated by 493 nucleotides
ABIE40_RS26590: ABIE40_RS26590 - MOSC domain-containing protein, at 33,532 to 34,431
_RS26590
ABIE40_RS26595: ABIE40_RS26595 - pilus assembly protein TadG-related protein, at 34,656 to 36,011
_RS26595
ABIE40_RS26600: ABIE40_RS26600 - L,D-transpeptidase, at 36,505 to 37,143
_RS26600
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 33.843 kb on + strand, within ABIE40_RS26590 at 33.843 kb on + strand, within ABIE40_RS26590 at 33.844 kb on - strand, within ABIE40_RS26590 at 33.883 kb on + strand, within ABIE40_RS26590 at 33.883 kb on + strand, within ABIE40_RS26590 at 33.884 kb on - strand, within ABIE40_RS26590 at 33.908 kb on + strand, within ABIE40_RS26590 at 33.970 kb on + strand, within ABIE40_RS26590 at 34.178 kb on - strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.253 kb on - strand, within ABIE40_RS26590 at 34.253 kb on - strand, within ABIE40_RS26590 at 34.253 kb on - strand, within ABIE40_RS26590 at 34.254 kb on + strand, within ABIE40_RS26590 at 34.312 kb on + strand, within ABIE40_RS26590 at 34.333 kb on + strand, within ABIE40_RS26590 at 34.334 kb on - strand, within ABIE40_RS26590 at 34.432 kb on + strand at 34.432 kb on + strand at 34.534 kb on - strand at 34.606 kb on - strand at 34.657 kb on + strand at 34.658 kb on - strand at 34.658 kb on - strand at 34.658 kb on - strand at 34.658 kb on - strand at 34.739 kb on - strand at 34.903 kb on + strand, within ABIE40_RS26595 at 34.916 kb on + strand, within ABIE40_RS26595 at 34.916 kb on + strand, within ABIE40_RS26595 at 34.948 kb on - strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.051 kb on - strand, within ABIE40_RS26595 at 35.076 kb on - strand, within ABIE40_RS26595 at 35.079 kb on + strand, within ABIE40_RS26595 at 35.080 kb on - strand, within ABIE40_RS26595 at 35.100 kb on - strand, within ABIE40_RS26595 at 35.100 kb on - strand, within ABIE40_RS26595 at 35.102 kb on - strand, within ABIE40_RS26595 at 35.102 kb on - strand, within ABIE40_RS26595 at 35.142 kb on - strand, within ABIE40_RS26595 at 35.159 kb on - strand, within ABIE40_RS26595 at 35.159 kb on - strand, within ABIE40_RS26595 at 35.159 kb on - strand, within ABIE40_RS26595 at 35.229 kb on - strand, within ABIE40_RS26595 at 35.229 kb on - strand, within ABIE40_RS26595 at 35.230 kb on + strand, within ABIE40_RS26595 at 35.230 kb on + strand, within ABIE40_RS26595 at 35.230 kb on + strand, within ABIE40_RS26595 at 35.231 kb on - strand, within ABIE40_RS26595 at 35.272 kb on + strand, within ABIE40_RS26595 at 35.272 kb on + strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.277 kb on - strand, within ABIE40_RS26595 at 35.277 kb on - strand, within ABIE40_RS26595 at 35.277 kb on - strand, within ABIE40_RS26595 at 35.278 kb on + strand, within ABIE40_RS26595 at 35.278 kb on + strand, within ABIE40_RS26595 at 35.279 kb on - strand, within ABIE40_RS26595 at 35.327 kb on + strand, within ABIE40_RS26595 at 35.328 kb on - strand, within ABIE40_RS26595 at 35.328 kb on - strand, within ABIE40_RS26595 at 35.381 kb on + strand, within ABIE40_RS26595 at 35.409 kb on - strand, within ABIE40_RS26595 at 35.409 kb on - strand, within ABIE40_RS26595 at 35.409 kb on - strand, within ABIE40_RS26595 at 35.414 kb on + strand, within ABIE40_RS26595 at 35.414 kb on + strand, within ABIE40_RS26595 at 35.414 kb on + strand, within ABIE40_RS26595 at 35.415 kb on - strand, within ABIE40_RS26595 at 35.415 kb on - strand, within ABIE40_RS26595 at 35.419 kb on - strand, within ABIE40_RS26595 at 35.423 kb on + strand, within ABIE40_RS26595 at 35.423 kb on + strand, within ABIE40_RS26595 at 35.423 kb on + strand, within ABIE40_RS26595 at 35.424 kb on - strand, within ABIE40_RS26595 at 35.464 kb on + strand, within ABIE40_RS26595 at 35.465 kb on - strand, within ABIE40_RS26595 at 35.465 kb on - strand, within ABIE40_RS26595 at 35.466 kb on - strand, within ABIE40_RS26595 at 35.525 kb on + strand, within ABIE40_RS26595 at 35.526 kb on - strand, within ABIE40_RS26595 at 35.585 kb on + strand, within ABIE40_RS26595 at 35.586 kb on - strand, within ABIE40_RS26595 at 35.586 kb on - strand, within ABIE40_RS26595 at 35.721 kb on - strand, within ABIE40_RS26595 at 35.721 kb on - strand, within ABIE40_RS26595 at 35.721 kb on - strand, within ABIE40_RS26595 at 35.721 kb on - strand, within ABIE40_RS26595 at 35.725 kb on + strand, within ABIE40_RS26595 at 35.725 kb on + strand, within ABIE40_RS26595 at 35.726 kb on - strand, within ABIE40_RS26595 at 35.726 kb on - strand, within ABIE40_RS26595 at 35.726 kb on - strand, within ABIE40_RS26595 at 35.726 kb on - strand, within ABIE40_RS26595 at 35.726 kb on - strand, within ABIE40_RS26595 at 35.773 kb on - strand, within ABIE40_RS26595 at 35.773 kb on - strand, within ABIE40_RS26595 at 35.973 kb on - strand at 35.985 kb on - strand at 35.993 kb on + strand at 35.993 kb on + strand at 35.993 kb on + strand at 35.993 kb on + strand at 35.994 kb on - strand at 35.994 kb on - strand at 35.994 kb on - strand at 36.068 kb on + strand at 36.211 kb on - strand at 36.296 kb on + strand at 36.297 kb on - strand at 36.297 kb on - strand at 36.470 kb on + strand at 36.470 kb on + strand at 36.471 kb on - strand at 36.471 kb on - strand at 36.471 kb on - strand at 36.473 kb on + strand at 36.473 kb on + strand at 36.473 kb on + strand at 36.474 kb on - strand at 36.474 kb on - strand at 36.545 kb on + strand at 36.545 kb on + strand at 36.569 kb on + strand, within ABIE40_RS26600 at 36.656 kb on + strand, within ABIE40_RS26600 at 36.657 kb on - strand, within ABIE40_RS26600 at 36.857 kb on + strand, within ABIE40_RS26600 at 36.858 kb on - strand, within ABIE40_RS26600 at 36.858 kb on - strand, within ABIE40_RS26600 at 36.858 kb on - strand, within ABIE40_RS26600 at 36.978 kb on - strand, within ABIE40_RS26600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 33,843 + ABIE40_RS26590 0.35 -1.5 33,843 + ABIE40_RS26590 0.35 -1.5 33,844 - ABIE40_RS26590 0.35 -0.6 33,883 + ABIE40_RS26590 0.39 -2.4 33,883 + ABIE40_RS26590 0.39 -0.2 33,884 - ABIE40_RS26590 0.39 +0.0 33,908 + ABIE40_RS26590 0.42 +0.4 33,970 + ABIE40_RS26590 0.49 +0.8 34,178 - ABIE40_RS26590 0.72 -0.5 34,252 + ABIE40_RS26590 0.80 +0.8 34,252 + ABIE40_RS26590 0.80 -1.8 34,252 + ABIE40_RS26590 0.80 +0.8 34,252 + ABIE40_RS26590 0.80 +0.0 34,253 - ABIE40_RS26590 0.80 -2.0 34,253 - ABIE40_RS26590 0.80 +1.4 34,253 - ABIE40_RS26590 0.80 +1.2 34,254 + ABIE40_RS26590 0.80 -0.2 34,312 + ABIE40_RS26590 0.87 +0.4 34,333 + ABIE40_RS26590 0.89 -1.6 34,334 - ABIE40_RS26590 0.89 -0.5 34,432 + +2.4 34,432 + -1.1 34,534 - -0.5 34,606 - +0.4 34,657 + -0.8 34,658 - -1.3 34,658 - +0.4 34,658 - -0.8 34,658 - -2.4 34,739 - +1.4 34,903 + ABIE40_RS26595 0.18 +1.4 34,916 + ABIE40_RS26595 0.19 -0.5 34,916 + ABIE40_RS26595 0.19 -0.2 34,948 - ABIE40_RS26595 0.22 -1.3 35,050 + ABIE40_RS26595 0.29 -2.5 35,050 + ABIE40_RS26595 0.29 +1.4 35,050 + ABIE40_RS26595 0.29 -0.5 35,050 + ABIE40_RS26595 0.29 +0.8 35,050 + ABIE40_RS26595 0.29 -0.8 35,051 - ABIE40_RS26595 0.29 +1.4 35,076 - ABIE40_RS26595 0.31 +0.2 35,079 + ABIE40_RS26595 0.31 -0.8 35,080 - ABIE40_RS26595 0.31 -1.1 35,100 - ABIE40_RS26595 0.33 -0.5 35,100 - ABIE40_RS26595 0.33 +2.4 35,102 - ABIE40_RS26595 0.33 +0.0 35,102 - ABIE40_RS26595 0.33 -2.5 35,142 - ABIE40_RS26595 0.36 +2.4 35,159 - ABIE40_RS26595 0.37 +1.4 35,159 - ABIE40_RS26595 0.37 -0.9 35,159 - ABIE40_RS26595 0.37 +1.4 35,229 - ABIE40_RS26595 0.42 -1.4 35,229 - ABIE40_RS26595 0.42 +1.0 35,230 + ABIE40_RS26595 0.42 +1.3 35,230 + ABIE40_RS26595 0.42 +1.4 35,230 + ABIE40_RS26595 0.42 +1.9 35,231 - ABIE40_RS26595 0.42 -0.6 35,272 + ABIE40_RS26595 0.45 -3.0 35,272 + ABIE40_RS26595 0.45 +0.4 35,273 - ABIE40_RS26595 0.46 -0.6 35,273 - ABIE40_RS26595 0.46 -1.2 35,273 - ABIE40_RS26595 0.46 -0.6 35,273 - ABIE40_RS26595 0.46 -1.8 35,276 + ABIE40_RS26595 0.46 +0.6 35,276 + ABIE40_RS26595 0.46 -1.0 35,276 + ABIE40_RS26595 0.46 -1.8 35,276 + ABIE40_RS26595 0.46 -3.0 35,276 + ABIE40_RS26595 0.46 +0.2 35,276 + ABIE40_RS26595 0.46 +2.4 35,276 + ABIE40_RS26595 0.46 -2.3 35,276 + ABIE40_RS26595 0.46 +0.7 35,277 - ABIE40_RS26595 0.46 -1.5 35,277 - ABIE40_RS26595 0.46 -1.0 35,277 - ABIE40_RS26595 0.46 +0.6 35,278 + ABIE40_RS26595 0.46 +2.4 35,278 + ABIE40_RS26595 0.46 -1.2 35,279 - ABIE40_RS26595 0.46 +3.9 35,327 + ABIE40_RS26595 0.49 -0.6 35,328 - ABIE40_RS26595 0.50 -1.5 35,328 - ABIE40_RS26595 0.50 +0.9 35,381 + ABIE40_RS26595 0.53 +0.0 35,409 - ABIE40_RS26595 0.56 +0.4 35,409 - ABIE40_RS26595 0.56 -1.0 35,409 - ABIE40_RS26595 0.56 -0.0 35,414 + ABIE40_RS26595 0.56 +2.4 35,414 + ABIE40_RS26595 0.56 -1.5 35,414 + ABIE40_RS26595 0.56 +0.0 35,415 - ABIE40_RS26595 0.56 +1.4 35,415 - ABIE40_RS26595 0.56 -0.5 35,419 - ABIE40_RS26595 0.56 +2.4 35,423 + ABIE40_RS26595 0.57 -1.7 35,423 + ABIE40_RS26595 0.57 +0.2 35,423 + ABIE40_RS26595 0.57 +0.6 35,424 - ABIE40_RS26595 0.57 -0.1 35,464 + ABIE40_RS26595 0.60 +2.4 35,465 - ABIE40_RS26595 0.60 +1.5 35,465 - ABIE40_RS26595 0.60 +0.8 35,466 - ABIE40_RS26595 0.60 +0.5 35,525 + ABIE40_RS26595 0.64 -1.3 35,526 - ABIE40_RS26595 0.64 -0.3 35,585 + ABIE40_RS26595 0.69 +0.4 35,586 - ABIE40_RS26595 0.69 +2.4 35,586 - ABIE40_RS26595 0.69 -1.5 35,721 - ABIE40_RS26595 0.79 +3.4 35,721 - ABIE40_RS26595 0.79 -2.5 35,721 - ABIE40_RS26595 0.79 +1.4 35,721 - ABIE40_RS26595 0.79 +1.1 35,725 + ABIE40_RS26595 0.79 +2.8 35,725 + ABIE40_RS26595 0.79 +1.4 35,726 - ABIE40_RS26595 0.79 +1.4 35,726 - ABIE40_RS26595 0.79 -0.8 35,726 - ABIE40_RS26595 0.79 -0.8 35,726 - ABIE40_RS26595 0.79 +1.4 35,726 - ABIE40_RS26595 0.79 +2.4 35,773 - ABIE40_RS26595 0.82 -1.6 35,773 - ABIE40_RS26595 0.82 +0.7 35,973 - -0.2 35,985 - +0.4 35,993 + -1.7 35,993 + +0.8 35,993 + -0.4 35,993 + -1.3 35,994 - +1.5 35,994 - +0.2 35,994 - -0.3 36,068 + +0.9 36,211 - +0.5 36,296 + +1.5 36,297 - -1.5 36,297 - -0.5 36,470 + +0.8 36,470 + -0.5 36,471 - -2.3 36,471 - +2.4 36,471 - +0.8 36,473 + +0.8 36,473 + +1.9 36,473 + +2.4 36,474 - +0.6 36,474 - +2.4 36,545 + +0.1 36,545 + +1.9 36,569 + ABIE40_RS26600 0.10 +0.4 36,656 + ABIE40_RS26600 0.24 -1.0 36,657 - ABIE40_RS26600 0.24 -1.5 36,857 + ABIE40_RS26600 0.55 +4.7 36,858 - ABIE40_RS26600 0.55 -1.5 36,858 - ABIE40_RS26600 0.55 +1.2 36,858 - ABIE40_RS26600 0.55 -0.0 36,978 - ABIE40_RS26600 0.74 +2.4
Or see this region's nucleotide sequence