Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS24965 and ABIE40_RS24970 are separated by 196 nucleotides ABIE40_RS24970 and ABIE40_RS24975 overlap by 14 nucleotides ABIE40_RS24975 and ABIE40_RS24980 are separated by 95 nucleotides ABIE40_RS24980 and ABIE40_RS24985 are separated by 47 nucleotides
ABIE40_RS24965: ABIE40_RS24965 - hypothetical protein, at 1,161,752 to 1,162,015
_RS24965
ABIE40_RS24970: ABIE40_RS24970 - winged helix-turn-helix domain-containing protein, at 1,162,212 to 1,162,889
_RS24970
ABIE40_RS24975: ABIE40_RS24975 - HAMP domain-containing sensor histidine kinase, at 1,162,876 to 1,164,243
_RS24975
ABIE40_RS24980: ABIE40_RS24980 - dual specificity protein phosphatase family protein, at 1,164,339 to 1,164,908
_RS24980
ABIE40_RS24985: ABIE40_RS24985 - glycosyltransferase family 25 protein, at 1,164,956 to 1,165,765
_RS24985
Position (kb) 1162
1163
1164
1165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1162.001 kb on + strand at 1162.002 kb on - strand at 1162.075 kb on + strand at 1162.089 kb on + strand at 1162.089 kb on + strand at 1162.089 kb on + strand at 1162.089 kb on + strand at 1162.090 kb on - strand at 1162.090 kb on - strand at 1162.090 kb on - strand at 1162.090 kb on - strand at 1162.111 kb on + strand at 1162.122 kb on - strand at 1162.145 kb on + strand at 1162.145 kb on + strand at 1162.145 kb on + strand at 1162.146 kb on - strand at 1162.146 kb on - strand at 1162.146 kb on - strand at 1162.152 kb on + strand at 1162.153 kb on - strand at 1162.153 kb on - strand at 1162.153 kb on - strand at 1162.254 kb on + strand at 1162.254 kb on + strand at 1162.255 kb on - strand at 1162.255 kb on - strand at 1162.255 kb on - strand at 1162.344 kb on + strand, within ABIE40_RS24970 at 1162.484 kb on - strand, within ABIE40_RS24970 at 1162.484 kb on - strand, within ABIE40_RS24970 at 1162.503 kb on + strand, within ABIE40_RS24970 at 1162.504 kb on - strand, within ABIE40_RS24970 at 1162.504 kb on - strand, within ABIE40_RS24970 at 1162.504 kb on - strand, within ABIE40_RS24970 at 1162.504 kb on - strand, within ABIE40_RS24970 at 1162.762 kb on + strand, within ABIE40_RS24970 at 1162.848 kb on - strand at 1162.848 kb on - strand at 1162.869 kb on - strand at 1162.869 kb on - strand at 1162.887 kb on + strand at 1162.975 kb on + strand at 1162.975 kb on + strand at 1162.975 kb on + strand at 1162.976 kb on - strand at 1162.976 kb on - strand at 1162.976 kb on - strand at 1163.053 kb on + strand, within ABIE40_RS24975 at 1163.053 kb on + strand, within ABIE40_RS24975 at 1163.053 kb on + strand, within ABIE40_RS24975 at 1163.053 kb on + strand, within ABIE40_RS24975 at 1163.053 kb on + strand, within ABIE40_RS24975 at 1163.053 kb on + strand, within ABIE40_RS24975 at 1163.054 kb on - strand, within ABIE40_RS24975 at 1163.098 kb on + strand, within ABIE40_RS24975 at 1163.098 kb on + strand, within ABIE40_RS24975 at 1163.098 kb on + strand, within ABIE40_RS24975 at 1163.098 kb on + strand, within ABIE40_RS24975 at 1163.099 kb on - strand, within ABIE40_RS24975 at 1163.099 kb on - strand, within ABIE40_RS24975 at 1163.099 kb on - strand, within ABIE40_RS24975 at 1163.132 kb on - strand, within ABIE40_RS24975 at 1163.203 kb on + strand, within ABIE40_RS24975 at 1163.203 kb on + strand, within ABIE40_RS24975 at 1163.203 kb on + strand, within ABIE40_RS24975 at 1163.204 kb on - strand, within ABIE40_RS24975 at 1163.204 kb on - strand, within ABIE40_RS24975 at 1163.204 kb on - strand, within ABIE40_RS24975 at 1163.204 kb on - strand, within ABIE40_RS24975 at 1163.830 kb on + strand, within ABIE40_RS24975 at 1163.830 kb on + strand, within ABIE40_RS24975 at 1163.830 kb on + strand, within ABIE40_RS24975 at 1163.830 kb on + strand, within ABIE40_RS24975 at 1163.830 kb on + strand, within ABIE40_RS24975 at 1163.830 kb on + strand, within ABIE40_RS24975 at 1163.831 kb on - strand, within ABIE40_RS24975 at 1163.831 kb on - strand, within ABIE40_RS24975 at 1163.831 kb on - strand, within ABIE40_RS24975 at 1163.896 kb on - strand, within ABIE40_RS24975 at 1164.137 kb on + strand at 1164.137 kb on + strand at 1164.137 kb on + strand at 1164.137 kb on + strand at 1164.138 kb on - strand at 1164.156 kb on - strand at 1164.156 kb on - strand at 1164.156 kb on - strand at 1164.241 kb on + strand at 1164.241 kb on + strand at 1164.241 kb on + strand at 1164.358 kb on + strand at 1164.359 kb on - strand at 1164.359 kb on - strand at 1164.409 kb on - strand, within ABIE40_RS24980 at 1164.409 kb on - strand, within ABIE40_RS24980 at 1164.417 kb on + strand, within ABIE40_RS24980 at 1164.417 kb on + strand, within ABIE40_RS24980 at 1164.417 kb on + strand, within ABIE40_RS24980 at 1164.417 kb on + strand, within ABIE40_RS24980 at 1164.443 kb on + strand, within ABIE40_RS24980 at 1164.444 kb on - strand, within ABIE40_RS24980 at 1164.444 kb on - strand, within ABIE40_RS24980 at 1164.504 kb on + strand, within ABIE40_RS24980 at 1164.504 kb on + strand, within ABIE40_RS24980 at 1164.505 kb on - strand, within ABIE40_RS24980 at 1164.615 kb on - strand, within ABIE40_RS24980 at 1164.756 kb on + strand, within ABIE40_RS24980 at 1164.757 kb on - strand, within ABIE40_RS24980 at 1164.757 kb on - strand, within ABIE40_RS24980 at 1164.759 kb on - strand, within ABIE40_RS24980 at 1164.805 kb on + strand, within ABIE40_RS24980 at 1164.805 kb on + strand, within ABIE40_RS24980 at 1164.806 kb on - strand, within ABIE40_RS24980 at 1164.806 kb on - strand, within ABIE40_RS24980 at 1164.806 kb on - strand, within ABIE40_RS24980 at 1164.806 kb on - strand, within ABIE40_RS24980 at 1164.813 kb on + strand, within ABIE40_RS24980 at 1164.813 kb on + strand, within ABIE40_RS24980 at 1164.814 kb on - strand, within ABIE40_RS24980 at 1164.814 kb on - strand, within ABIE40_RS24980 at 1164.814 kb on - strand, within ABIE40_RS24980 at 1164.816 kb on + strand, within ABIE40_RS24980 at 1164.817 kb on - strand, within ABIE40_RS24980 at 1165.021 kb on - strand at 1165.021 kb on - strand at 1165.051 kb on - strand, within ABIE40_RS24985 at 1165.051 kb on - strand, within ABIE40_RS24985 at 1165.188 kb on + strand, within ABIE40_RS24985
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 1,162,001 + +0.1 1,162,002 - -0.9 1,162,075 + +0.7 1,162,089 + -0.6 1,162,089 + -0.4 1,162,089 + +0.4 1,162,089 + +1.0 1,162,090 - -0.9 1,162,090 - -2.7 1,162,090 - +0.6 1,162,090 - +0.1 1,162,111 + -0.3 1,162,122 - +0.8 1,162,145 + -1.3 1,162,145 + +1.2 1,162,145 + -2.2 1,162,146 - +1.9 1,162,146 - +0.6 1,162,146 - -0.1 1,162,152 + +0.4 1,162,153 - +0.3 1,162,153 - +0.3 1,162,153 - -2.0 1,162,254 + +0.0 1,162,254 + +1.1 1,162,255 - -0.9 1,162,255 - -0.9 1,162,255 - -1.9 1,162,344 + ABIE40_RS24970 0.19 -1.1 1,162,484 - ABIE40_RS24970 0.40 +1.1 1,162,484 - ABIE40_RS24970 0.40 +0.4 1,162,503 + ABIE40_RS24970 0.43 -0.1 1,162,504 - ABIE40_RS24970 0.43 +0.1 1,162,504 - ABIE40_RS24970 0.43 +0.1 1,162,504 - ABIE40_RS24970 0.43 -0.3 1,162,504 - ABIE40_RS24970 0.43 +3.5 1,162,762 + ABIE40_RS24970 0.81 +1.2 1,162,848 - +2.6 1,162,848 - +0.5 1,162,869 - +0.9 1,162,869 - +0.6 1,162,887 + -1.1 1,162,975 + -2.7 1,162,975 + +1.4 1,162,975 + -2.0 1,162,976 - +0.9 1,162,976 - +0.4 1,162,976 - +0.3 1,163,053 + ABIE40_RS24975 0.13 +0.9 1,163,053 + ABIE40_RS24975 0.13 -1.4 1,163,053 + ABIE40_RS24975 0.13 +1.9 1,163,053 + ABIE40_RS24975 0.13 +1.3 1,163,053 + ABIE40_RS24975 0.13 -0.8 1,163,053 + ABIE40_RS24975 0.13 -1.3 1,163,054 - ABIE40_RS24975 0.13 -0.4 1,163,098 + ABIE40_RS24975 0.16 -0.3 1,163,098 + ABIE40_RS24975 0.16 -0.0 1,163,098 + ABIE40_RS24975 0.16 -0.9 1,163,098 + ABIE40_RS24975 0.16 -1.6 1,163,099 - ABIE40_RS24975 0.16 +0.7 1,163,099 - ABIE40_RS24975 0.16 +0.2 1,163,099 - ABIE40_RS24975 0.16 +0.9 1,163,132 - ABIE40_RS24975 0.19 -1.0 1,163,203 + ABIE40_RS24975 0.24 -0.1 1,163,203 + ABIE40_RS24975 0.24 -0.3 1,163,203 + ABIE40_RS24975 0.24 +0.3 1,163,204 - ABIE40_RS24975 0.24 -1.9 1,163,204 - ABIE40_RS24975 0.24 -1.3 1,163,204 - ABIE40_RS24975 0.24 -1.9 1,163,204 - ABIE40_RS24975 0.24 -0.4 1,163,830 + ABIE40_RS24975 0.70 -2.9 1,163,830 + ABIE40_RS24975 0.70 -2.6 1,163,830 + ABIE40_RS24975 0.70 -0.9 1,163,830 + ABIE40_RS24975 0.70 +0.5 1,163,830 + ABIE40_RS24975 0.70 -1.4 1,163,830 + ABIE40_RS24975 0.70 -2.1 1,163,831 - ABIE40_RS24975 0.70 -0.4 1,163,831 - ABIE40_RS24975 0.70 +0.0 1,163,831 - ABIE40_RS24975 0.70 -0.9 1,163,896 - ABIE40_RS24975 0.75 +0.4 1,164,137 + -2.5 1,164,137 + -0.4 1,164,137 + -0.0 1,164,137 + -0.7 1,164,138 - +0.6 1,164,156 - +1.7 1,164,156 - -0.9 1,164,156 - -1.8 1,164,241 + +0.8 1,164,241 + -2.2 1,164,241 + -0.1 1,164,358 + -0.2 1,164,359 - +0.3 1,164,359 - -0.1 1,164,409 - ABIE40_RS24980 0.12 -0.9 1,164,409 - ABIE40_RS24980 0.12 +1.9 1,164,417 + ABIE40_RS24980 0.14 -1.3 1,164,417 + ABIE40_RS24980 0.14 -1.3 1,164,417 + ABIE40_RS24980 0.14 -1.3 1,164,417 + ABIE40_RS24980 0.14 -0.5 1,164,443 + ABIE40_RS24980 0.18 +1.5 1,164,444 - ABIE40_RS24980 0.18 -1.1 1,164,444 - ABIE40_RS24980 0.18 -0.4 1,164,504 + ABIE40_RS24980 0.29 -1.7 1,164,504 + ABIE40_RS24980 0.29 -0.4 1,164,505 - ABIE40_RS24980 0.29 -0.1 1,164,615 - ABIE40_RS24980 0.48 -0.9 1,164,756 + ABIE40_RS24980 0.73 -0.3 1,164,757 - ABIE40_RS24980 0.73 +1.1 1,164,757 - ABIE40_RS24980 0.73 -0.4 1,164,759 - ABIE40_RS24980 0.74 +0.9 1,164,805 + ABIE40_RS24980 0.82 +0.1 1,164,805 + ABIE40_RS24980 0.82 -0.9 1,164,806 - ABIE40_RS24980 0.82 -1.4 1,164,806 - ABIE40_RS24980 0.82 +0.6 1,164,806 - ABIE40_RS24980 0.82 +0.1 1,164,806 - ABIE40_RS24980 0.82 +2.9 1,164,813 + ABIE40_RS24980 0.83 +0.1 1,164,813 + ABIE40_RS24980 0.83 -1.0 1,164,814 - ABIE40_RS24980 0.83 +2.2 1,164,814 - ABIE40_RS24980 0.83 +1.2 1,164,814 - ABIE40_RS24980 0.83 +0.8 1,164,816 + ABIE40_RS24980 0.84 -2.3 1,164,817 - ABIE40_RS24980 0.84 +0.2 1,165,021 - -1.3 1,165,021 - +0.3 1,165,051 - ABIE40_RS24985 0.12 -2.6 1,165,051 - ABIE40_RS24985 0.12 -0.1 1,165,188 + ABIE40_RS24985 0.29 -1.1
Or see this region's nucleotide sequence