Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21470 and ABIE40_RS21475 are separated by 47 nucleotides ABIE40_RS21475 and ABIE40_RS21480 are separated by 78 nucleotides ABIE40_RS21480 and ABIE40_RS21485 are separated by 22 nucleotides
ABIE40_RS21470: ABIE40_RS21470 - M20/M25/M40 family metallo-hydrolase, at 413,069 to 414,439
_RS21470
ABIE40_RS21475: ABIE40_RS21475 - transporter substrate-binding domain-containing protein, at 414,487 to 415,266
_RS21475
ABIE40_RS21480: ABIE40_RS21480 - aminotransferase, at 415,345 to 416,478
_RS21480
ABIE40_RS21485: ABIE40_RS21485 - ornithine cyclodeaminase family protein, at 416,501 to 417,445
_RS21485
Position (kb) 415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 414.439 kb on + strand at 414.439 kb on + strand at 414.439 kb on + strand at 414.439 kb on + strand at 414.439 kb on + strand at 414.440 kb on - strand at 414.440 kb on - strand at 414.440 kb on - strand at 414.440 kb on - strand at 414.468 kb on + strand at 414.788 kb on + strand, within ABIE40_RS21475 at 414.788 kb on + strand, within ABIE40_RS21475 at 414.788 kb on + strand, within ABIE40_RS21475 at 414.853 kb on + strand, within ABIE40_RS21475 at 414.853 kb on + strand, within ABIE40_RS21475 at 414.853 kb on + strand, within ABIE40_RS21475 at 414.959 kb on + strand, within ABIE40_RS21475 at 414.960 kb on - strand, within ABIE40_RS21475 at 414.960 kb on - strand, within ABIE40_RS21475 at 414.960 kb on - strand, within ABIE40_RS21475 at 414.960 kb on - strand, within ABIE40_RS21475 at 415.064 kb on + strand, within ABIE40_RS21475 at 415.064 kb on + strand, within ABIE40_RS21475 at 415.064 kb on + strand, within ABIE40_RS21475 at 415.065 kb on - strand, within ABIE40_RS21475 at 415.065 kb on - strand, within ABIE40_RS21475 at 415.065 kb on - strand, within ABIE40_RS21475 at 415.247 kb on - strand at 415.266 kb on - strand at 415.427 kb on + strand at 415.427 kb on + strand at 415.428 kb on - strand at 415.443 kb on - strand at 415.443 kb on - strand at 415.443 kb on - strand at 415.443 kb on - strand at 415.539 kb on - strand, within ABIE40_RS21480 at 415.539 kb on - strand, within ABIE40_RS21480 at 415.727 kb on + strand, within ABIE40_RS21480 at 415.727 kb on + strand, within ABIE40_RS21480 at 415.805 kb on + strand, within ABIE40_RS21480 at 415.805 kb on + strand, within ABIE40_RS21480 at 415.805 kb on + strand, within ABIE40_RS21480 at 415.805 kb on + strand, within ABIE40_RS21480 at 415.805 kb on + strand, within ABIE40_RS21480 at 415.806 kb on - strand, within ABIE40_RS21480 at 415.806 kb on - strand, within ABIE40_RS21480 at 415.806 kb on - strand, within ABIE40_RS21480 at 415.844 kb on + strand, within ABIE40_RS21480 at 415.844 kb on + strand, within ABIE40_RS21480 at 415.901 kb on + strand, within ABIE40_RS21480 at 415.902 kb on - strand, within ABIE40_RS21480 at 415.965 kb on - strand, within ABIE40_RS21480 at 416.132 kb on + strand, within ABIE40_RS21480 at 416.144 kb on + strand, within ABIE40_RS21480 at 416.144 kb on + strand, within ABIE40_RS21480 at 416.145 kb on - strand, within ABIE40_RS21480 at 416.145 kb on - strand, within ABIE40_RS21480 at 416.145 kb on - strand, within ABIE40_RS21480 at 416.262 kb on - strand, within ABIE40_RS21480 at 416.262 kb on - strand, within ABIE40_RS21480 at 416.262 kb on - strand, within ABIE40_RS21480 at 416.312 kb on + strand, within ABIE40_RS21480 at 416.313 kb on - strand, within ABIE40_RS21480 at 416.313 kb on - strand, within ABIE40_RS21480 at 416.313 kb on - strand, within ABIE40_RS21480 at 416.436 kb on - strand at 416.496 kb on + strand at 416.718 kb on + strand, within ABIE40_RS21485 at 416.727 kb on + strand, within ABIE40_RS21485 at 416.728 kb on - strand, within ABIE40_RS21485 at 416.902 kb on + strand, within ABIE40_RS21485 at 417.059 kb on + strand, within ABIE40_RS21485 at 417.060 kb on - strand, within ABIE40_RS21485 at 417.182 kb on + strand, within ABIE40_RS21485 at 417.183 kb on - strand, within ABIE40_RS21485 at 417.225 kb on + strand, within ABIE40_RS21485 at 417.225 kb on + strand, within ABIE40_RS21485 at 417.225 kb on + strand, within ABIE40_RS21485 at 417.225 kb on + strand, within ABIE40_RS21485 at 417.225 kb on + strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.226 kb on - strand, within ABIE40_RS21485 at 417.276 kb on + strand, within ABIE40_RS21485 at 417.276 kb on + strand, within ABIE40_RS21485 at 417.276 kb on + strand, within ABIE40_RS21485 at 417.276 kb on + strand, within ABIE40_RS21485 at 417.276 kb on + strand, within ABIE40_RS21485 at 417.277 kb on - strand, within ABIE40_RS21485 at 417.277 kb on - strand, within ABIE40_RS21485 at 417.277 kb on - strand, within ABIE40_RS21485 at 417.460 kb on + strand at 417.460 kb on + strand at 417.461 kb on - strand at 417.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 414,439 + +0.1 414,439 + +0.0 414,439 + +0.8 414,439 + +0.2 414,439 + +0.6 414,440 - +1.1 414,440 - -2.2 414,440 - +2.1 414,440 - -0.7 414,468 + -0.2 414,788 + ABIE40_RS21475 0.39 -1.2 414,788 + ABIE40_RS21475 0.39 +0.1 414,788 + ABIE40_RS21475 0.39 -0.4 414,853 + ABIE40_RS21475 0.47 +0.0 414,853 + ABIE40_RS21475 0.47 -0.1 414,853 + ABIE40_RS21475 0.47 +1.6 414,959 + ABIE40_RS21475 0.61 -1.2 414,960 - ABIE40_RS21475 0.61 -0.5 414,960 - ABIE40_RS21475 0.61 +0.5 414,960 - ABIE40_RS21475 0.61 -0.0 414,960 - ABIE40_RS21475 0.61 +0.4 415,064 + ABIE40_RS21475 0.74 +1.8 415,064 + ABIE40_RS21475 0.74 +1.5 415,064 + ABIE40_RS21475 0.74 -0.0 415,065 - ABIE40_RS21475 0.74 +0.7 415,065 - ABIE40_RS21475 0.74 -0.5 415,065 - ABIE40_RS21475 0.74 +0.3 415,247 - -0.9 415,266 - -1.8 415,427 + +0.7 415,427 + +0.4 415,428 - +0.2 415,443 - +0.8 415,443 - +1.4 415,443 - +0.3 415,443 - -0.9 415,539 - ABIE40_RS21480 0.17 +0.9 415,539 - ABIE40_RS21480 0.17 -1.0 415,727 + ABIE40_RS21480 0.34 +0.4 415,727 + ABIE40_RS21480 0.34 -0.8 415,805 + ABIE40_RS21480 0.41 +0.9 415,805 + ABIE40_RS21480 0.41 +0.1 415,805 + ABIE40_RS21480 0.41 +0.2 415,805 + ABIE40_RS21480 0.41 -0.3 415,805 + ABIE40_RS21480 0.41 -0.6 415,806 - ABIE40_RS21480 0.41 -0.5 415,806 - ABIE40_RS21480 0.41 -2.5 415,806 - ABIE40_RS21480 0.41 +2.2 415,844 + ABIE40_RS21480 0.44 -1.0 415,844 + ABIE40_RS21480 0.44 -1.3 415,901 + ABIE40_RS21480 0.49 -1.4 415,902 - ABIE40_RS21480 0.49 -1.0 415,965 - ABIE40_RS21480 0.55 -0.6 416,132 + ABIE40_RS21480 0.69 -0.7 416,144 + ABIE40_RS21480 0.70 -0.7 416,144 + ABIE40_RS21480 0.70 -0.4 416,145 - ABIE40_RS21480 0.71 +2.8 416,145 - ABIE40_RS21480 0.71 -1.0 416,145 - ABIE40_RS21480 0.71 +1.0 416,262 - ABIE40_RS21480 0.81 +1.3 416,262 - ABIE40_RS21480 0.81 -1.9 416,262 - ABIE40_RS21480 0.81 +0.8 416,312 + ABIE40_RS21480 0.85 -0.8 416,313 - ABIE40_RS21480 0.85 -0.4 416,313 - ABIE40_RS21480 0.85 -1.3 416,313 - ABIE40_RS21480 0.85 -1.8 416,436 - -1.0 416,496 + +1.2 416,718 + ABIE40_RS21485 0.23 -0.2 416,727 + ABIE40_RS21485 0.24 -1.5 416,728 - ABIE40_RS21485 0.24 -0.6 416,902 + ABIE40_RS21485 0.42 +0.1 417,059 + ABIE40_RS21485 0.59 +0.8 417,060 - ABIE40_RS21485 0.59 -0.8 417,182 + ABIE40_RS21485 0.72 -1.9 417,183 - ABIE40_RS21485 0.72 -0.4 417,225 + ABIE40_RS21485 0.77 +2.0 417,225 + ABIE40_RS21485 0.77 +0.2 417,225 + ABIE40_RS21485 0.77 +0.1 417,225 + ABIE40_RS21485 0.77 -0.7 417,225 + ABIE40_RS21485 0.77 -0.8 417,226 - ABIE40_RS21485 0.77 +1.0 417,226 - ABIE40_RS21485 0.77 +1.4 417,226 - ABIE40_RS21485 0.77 -0.7 417,226 - ABIE40_RS21485 0.77 -0.4 417,226 - ABIE40_RS21485 0.77 -0.9 417,226 - ABIE40_RS21485 0.77 -0.4 417,226 - ABIE40_RS21485 0.77 +0.0 417,226 - ABIE40_RS21485 0.77 -0.0 417,276 + ABIE40_RS21485 0.82 +0.4 417,276 + ABIE40_RS21485 0.82 -0.0 417,276 + ABIE40_RS21485 0.82 -0.9 417,276 + ABIE40_RS21485 0.82 -0.5 417,276 + ABIE40_RS21485 0.82 +1.8 417,277 - ABIE40_RS21485 0.82 -1.0 417,277 - ABIE40_RS21485 0.82 -0.8 417,277 - ABIE40_RS21485 0.82 -0.5 417,460 + +0.2 417,460 + -1.3 417,461 - +4.4 417,461 - -1.0
Or see this region's nucleotide sequence