Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19745

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS19740 and ABIE40_RS19745 overlap by 11 nucleotidesABIE40_RS19745 and ABIE40_RS19750 are separated by 442 nucleotides ABIE40_RS19740: ABIE40_RS19740 - DUF3095 domain-containing protein, at 42,942 to 44,114 _RS19740 ABIE40_RS19745: ABIE40_RS19745 - nucleotide sugar dehydrogenase, at 44,104 to 45,444 _RS19745 ABIE40_RS19750: ABIE40_RS19750 - adenylate/guanylate cyclase domain-containing protein, at 45,887 to 47,230 _RS19750 Position (kb) 44 45 46Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 43.357 kb on - strand, within ABIE40_RS19740at 43.371 kb on + strand, within ABIE40_RS19740at 43.371 kb on + strand, within ABIE40_RS19740at 43.371 kb on + strand, within ABIE40_RS19740at 43.371 kb on + strand, within ABIE40_RS19740at 43.371 kb on + strand, within ABIE40_RS19740at 43.372 kb on - strand, within ABIE40_RS19740at 43.372 kb on - strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.380 kb on + strand, within ABIE40_RS19740at 43.381 kb on - strand, within ABIE40_RS19740at 43.381 kb on - strand, within ABIE40_RS19740at 43.381 kb on - strand, within ABIE40_RS19740at 43.381 kb on - strand, within ABIE40_RS19740at 43.381 kb on - strand, within ABIE40_RS19740at 43.440 kb on + strand, within ABIE40_RS19740at 43.440 kb on + strand, within ABIE40_RS19740at 43.440 kb on + strand, within ABIE40_RS19740at 43.440 kb on + strand, within ABIE40_RS19740at 43.440 kb on + strand, within ABIE40_RS19740at 43.440 kb on + strand, within ABIE40_RS19740at 43.441 kb on - strand, within ABIE40_RS19740at 43.441 kb on - strand, within ABIE40_RS19740at 43.441 kb on - strand, within ABIE40_RS19740at 43.441 kb on - strand, within ABIE40_RS19740at 43.441 kb on - strand, within ABIE40_RS19740at 43.441 kb on - strand, within ABIE40_RS19740at 43.441 kb on - strand, within ABIE40_RS19740at 43.442 kb on + strand, within ABIE40_RS19740at 43.442 kb on + strand, within ABIE40_RS19740at 43.442 kb on + strand, within ABIE40_RS19740at 43.443 kb on - strand, within ABIE40_RS19740at 43.443 kb on - strand, within ABIE40_RS19740at 43.683 kb on - strand, within ABIE40_RS19740at 43.768 kb on + strand, within ABIE40_RS19740at 43.768 kb on + strand, within ABIE40_RS19740at 43.769 kb on - strand, within ABIE40_RS19740at 43.769 kb on - strand, within ABIE40_RS19740at 43.769 kb on - strand, within ABIE40_RS19740at 43.769 kb on - strand, within ABIE40_RS19740at 43.769 kb on - strand, within ABIE40_RS19740at 43.773 kb on + strand, within ABIE40_RS19740at 43.816 kb on - strand, within ABIE40_RS19740at 43.918 kb on + strand, within ABIE40_RS19740at 44.199 kb on - strandat 44.199 kb on - strandat 44.240 kb on + strand, within ABIE40_RS19745at 44.240 kb on + strand, within ABIE40_RS19745at 44.240 kb on + strand, within ABIE40_RS19745at 44.254 kb on - strand, within ABIE40_RS19745at 44.424 kb on - strand, within ABIE40_RS19745at 44.511 kb on - strand, within ABIE40_RS19745at 44.594 kb on + strand, within ABIE40_RS19745at 44.594 kb on + strand, within ABIE40_RS19745at 44.594 kb on + strand, within ABIE40_RS19745at 44.594 kb on + strand, within ABIE40_RS19745at 44.595 kb on - strand, within ABIE40_RS19745at 44.595 kb on - strand, within ABIE40_RS19745at 44.595 kb on - strand, within ABIE40_RS19745at 44.642 kb on + strand, within ABIE40_RS19745at 44.643 kb on - strand, within ABIE40_RS19745at 44.654 kb on + strand, within ABIE40_RS19745at 44.655 kb on - strand, within ABIE40_RS19745at 44.749 kb on - strand, within ABIE40_RS19745at 44.912 kb on + strand, within ABIE40_RS19745at 44.912 kb on + strand, within ABIE40_RS19745at 44.912 kb on + strand, within ABIE40_RS19745at 44.912 kb on + strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.913 kb on - strand, within ABIE40_RS19745at 44.997 kb on + strand, within ABIE40_RS19745at 45.029 kb on + strand, within ABIE40_RS19745at 45.030 kb on - strand, within ABIE40_RS19745at 45.030 kb on - strand, within ABIE40_RS19745at 45.104 kb on + strand, within ABIE40_RS19745at 45.104 kb on + strand, within ABIE40_RS19745at 45.105 kb on - strand, within ABIE40_RS19745at 45.257 kb on + strand, within ABIE40_RS19745at 45.257 kb on + strand, within ABIE40_RS19745at 45.257 kb on + strand, within ABIE40_RS19745at 45.258 kb on - strand, within ABIE40_RS19745at 45.363 kb on - strandat 45.363 kb on - strandat 45.481 kb on + strandat 45.482 kb on - strandat 45.482 kb on - strandat 45.503 kb on - strandat 45.674 kb on + strandat 45.674 kb on + strandat 45.674 kb on + strandat 45.674 kb on + strandat 45.675 kb on - strandat 45.675 kb on - strandat 45.675 kb on - strandat 45.675 kb on - strandat 45.681 kb on - strandat 45.681 kb on - strandat 45.681 kb on - strandat 45.688 kb on + strandat 45.689 kb on - strandat 45.693 kb on + strandat 45.782 kb on + strandat 45.782 kb on + strandat 45.782 kb on + strandat 45.782 kb on + strandat 45.783 kb on - strandat 45.783 kb on - strandat 45.785 kb on + strandat 45.877 kb on - strandat 45.879 kb on + strandat 45.880 kb on - strandat 45.880 kb on - strandat 45.983 kb on - strandat 46.070 kb on + strand, within ABIE40_RS19750at 46.071 kb on - strand, within ABIE40_RS19750at 46.071 kb on - strand, within ABIE40_RS19750at 46.071 kb on - strand, within ABIE40_RS19750at 46.173 kb on - strand, within ABIE40_RS19750at 46.175 kb on + strand, within ABIE40_RS19750at 46.175 kb on + strand, within ABIE40_RS19750at 46.175 kb on + strand, within ABIE40_RS19750at 46.175 kb on + strand, within ABIE40_RS19750at 46.175 kb on + strand, within ABIE40_RS19750at 46.176 kb on - strand, within ABIE40_RS19750at 46.176 kb on - strand, within ABIE40_RS19750at 46.176 kb on - strand, within ABIE40_RS19750at 46.176 kb on - strand, within ABIE40_RS19750at 46.179 kb on - strand, within ABIE40_RS19750at 46.283 kb on + strand, within ABIE40_RS19750at 46.284 kb on - strand, within ABIE40_RS19750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
remove
43,357 - ABIE40_RS19740 0.35 +0.0
43,371 + ABIE40_RS19740 0.37 +0.7
43,371 + ABIE40_RS19740 0.37 -0.6
43,371 + ABIE40_RS19740 0.37 -1.5
43,371 + ABIE40_RS19740 0.37 +1.2
43,371 + ABIE40_RS19740 0.37 +0.4
43,372 - ABIE40_RS19740 0.37 +0.4
43,372 - ABIE40_RS19740 0.37 -2.1
43,380 + ABIE40_RS19740 0.37 -0.3
43,380 + ABIE40_RS19740 0.37 +0.6
43,380 + ABIE40_RS19740 0.37 -0.8
43,380 + ABIE40_RS19740 0.37 +0.4
43,380 + ABIE40_RS19740 0.37 +2.0
43,380 + ABIE40_RS19740 0.37 +0.6
43,380 + ABIE40_RS19740 0.37 -0.7
43,380 + ABIE40_RS19740 0.37 -0.3
43,381 - ABIE40_RS19740 0.37 +3.4
43,381 - ABIE40_RS19740 0.37 -1.3
43,381 - ABIE40_RS19740 0.37 -0.5
43,381 - ABIE40_RS19740 0.37 -0.8
43,381 - ABIE40_RS19740 0.37 -0.0
43,440 + ABIE40_RS19740 0.42 +1.9
43,440 + ABIE40_RS19740 0.42 -1.0
43,440 + ABIE40_RS19740 0.42 -0.3
43,440 + ABIE40_RS19740 0.42 -1.1
43,440 + ABIE40_RS19740 0.42 -1.4
43,440 + ABIE40_RS19740 0.42 +1.4
43,441 - ABIE40_RS19740 0.43 -0.3
43,441 - ABIE40_RS19740 0.43 -1.4
43,441 - ABIE40_RS19740 0.43 +1.9
43,441 - ABIE40_RS19740 0.43 -0.9
43,441 - ABIE40_RS19740 0.43 -1.0
43,441 - ABIE40_RS19740 0.43 -1.3
43,441 - ABIE40_RS19740 0.43 -2.1
43,442 + ABIE40_RS19740 0.43 -0.0
43,442 + ABIE40_RS19740 0.43 -2.6
43,442 + ABIE40_RS19740 0.43 -1.6
43,443 - ABIE40_RS19740 0.43 -2.0
43,443 - ABIE40_RS19740 0.43 -3.1
43,683 - ABIE40_RS19740 0.63 +0.1
43,768 + ABIE40_RS19740 0.70 +1.9
43,768 + ABIE40_RS19740 0.70 +0.3
43,769 - ABIE40_RS19740 0.71 +0.0
43,769 - ABIE40_RS19740 0.71 +1.1
43,769 - ABIE40_RS19740 0.71 -1.4
43,769 - ABIE40_RS19740 0.71 -0.3
43,769 - ABIE40_RS19740 0.71 +1.1
43,773 + ABIE40_RS19740 0.71 -1.2
43,816 - ABIE40_RS19740 0.75 -0.1
43,918 + ABIE40_RS19740 0.83 +0.3
44,199 - -3.0
44,199 - -2.7
44,240 + ABIE40_RS19745 0.10 -0.1
44,240 + ABIE40_RS19745 0.10 -2.7
44,240 + ABIE40_RS19745 0.10 +0.3
44,254 - ABIE40_RS19745 0.11 -1.0
44,424 - ABIE40_RS19745 0.24 -2.6
44,511 - ABIE40_RS19745 0.30 -0.7
44,594 + ABIE40_RS19745 0.37 -3.4
44,594 + ABIE40_RS19745 0.37 -4.4
44,594 + ABIE40_RS19745 0.37 -3.4
44,594 + ABIE40_RS19745 0.37 -2.8
44,595 - ABIE40_RS19745 0.37 -1.1
44,595 - ABIE40_RS19745 0.37 +1.9
44,595 - ABIE40_RS19745 0.37 -2.2
44,642 + ABIE40_RS19745 0.40 -2.0
44,643 - ABIE40_RS19745 0.40 -1.1
44,654 + ABIE40_RS19745 0.41 -2.0
44,655 - ABIE40_RS19745 0.41 -1.1
44,749 - ABIE40_RS19745 0.48 -1.3
44,912 + ABIE40_RS19745 0.60 -2.9
44,912 + ABIE40_RS19745 0.60 -0.1
44,912 + ABIE40_RS19745 0.60 -5.1
44,912 + ABIE40_RS19745 0.60 -2.1
44,913 - ABIE40_RS19745 0.60 -2.0
44,913 - ABIE40_RS19745 0.60 +0.3
44,913 - ABIE40_RS19745 0.60 -3.4
44,913 - ABIE40_RS19745 0.60 -2.5
44,913 - ABIE40_RS19745 0.60 -0.1
44,913 - ABIE40_RS19745 0.60 -3.5
44,913 - ABIE40_RS19745 0.60 -4.2
44,913 - ABIE40_RS19745 0.60 -3.0
44,913 - ABIE40_RS19745 0.60 -2.9
44,997 + ABIE40_RS19745 0.67 -2.1
45,029 + ABIE40_RS19745 0.69 -3.3
45,030 - ABIE40_RS19745 0.69 -0.1
45,030 - ABIE40_RS19745 0.69 -2.1
45,104 + ABIE40_RS19745 0.75 -2.7
45,104 + ABIE40_RS19745 0.75 -3.4
45,105 - ABIE40_RS19745 0.75 -2.2
45,257 + ABIE40_RS19745 0.86 -1.7
45,257 + ABIE40_RS19745 0.86 -3.6
45,257 + ABIE40_RS19745 0.86 -3.7
45,258 - ABIE40_RS19745 0.86 -6.1
45,363 - -2.6
45,363 - -2.6
45,481 + -1.5
45,482 - -1.1
45,482 - -1.5
45,503 - +0.3
45,674 + +2.9
45,674 + -0.5
45,674 + -0.5
45,674 + +0.4
45,675 - -1.5
45,675 - -2.3
45,675 - -0.3
45,675 - -1.3
45,681 - +0.9
45,681 - -1.0
45,681 - -0.5
45,688 + +1.0
45,689 - +1.9
45,693 + +0.7
45,782 + +2.1
45,782 + -0.5
45,782 + -0.3
45,782 + -2.3
45,783 - -2.0
45,783 - +1.1
45,785 + -0.4
45,877 - +1.5
45,879 + +0.3
45,880 - +0.6
45,880 - +0.9
45,983 - -1.1
46,070 + ABIE40_RS19750 0.14 -0.4
46,071 - ABIE40_RS19750 0.14 +0.9
46,071 - ABIE40_RS19750 0.14 +0.1
46,071 - ABIE40_RS19750 0.14 +0.2
46,173 - ABIE40_RS19750 0.21 +1.1
46,175 + ABIE40_RS19750 0.21 -1.9
46,175 + ABIE40_RS19750 0.21 -1.3
46,175 + ABIE40_RS19750 0.21 -2.4
46,175 + ABIE40_RS19750 0.21 -0.9
46,175 + ABIE40_RS19750 0.21 -1.8
46,176 - ABIE40_RS19750 0.22 -2.1
46,176 - ABIE40_RS19750 0.22 -0.1
46,176 - ABIE40_RS19750 0.22 -2.3
46,176 - ABIE40_RS19750 0.22 -0.7
46,179 - ABIE40_RS19750 0.22 +0.5
46,283 + ABIE40_RS19750 0.29 -0.7
46,284 - ABIE40_RS19750 0.30 +0.3

Or see this region's nucleotide sequence