Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS17920 and ABIE40_RS17925 overlap by 1 nucleotides ABIE40_RS17925 and ABIE40_RS17930 are separated by 254 nucleotides ABIE40_RS17930 and ABIE40_RS17935 are separated by 82 nucleotides
ABIE40_RS17920: ABIE40_RS17920 - F0F1 ATP synthase subunit alpha, at 3,582,245 to 3,583,774
_RS17920
ABIE40_RS17925: ABIE40_RS17925 - F0F1 ATP synthase subunit delta, at 3,583,774 to 3,584,340
_RS17925
ABIE40_RS17930: ABIE40_RS17930 - DUF4345 domain-containing protein, at 3,584,595 to 3,584,984
_RS17930
ABIE40_RS17935: ABIE40_RS17935 - primosomal protein N', at 3,585,067 to 3,587,283
_RS17935
Position (kb)
3584
3585 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3584.503 kb on - strand at 3584.513 kb on + strand at 3584.514 kb on - strand at 3584.514 kb on - strand at 3584.591 kb on + strand at 3584.592 kb on - strand at 3584.617 kb on + strand at 3584.618 kb on - strand at 3584.620 kb on + strand at 3584.621 kb on - strand at 3584.755 kb on + strand, within ABIE40_RS17930 at 3584.755 kb on + strand, within ABIE40_RS17930 at 3584.755 kb on + strand, within ABIE40_RS17930 at 3584.755 kb on + strand, within ABIE40_RS17930 at 3584.755 kb on + strand, within ABIE40_RS17930 at 3584.755 kb on + strand, within ABIE40_RS17930 at 3584.756 kb on - strand, within ABIE40_RS17930 at 3584.756 kb on - strand, within ABIE40_RS17930 at 3584.756 kb on - strand, within ABIE40_RS17930 at 3584.756 kb on - strand, within ABIE40_RS17930 at 3584.756 kb on - strand, within ABIE40_RS17930 at 3584.756 kb on - strand, within ABIE40_RS17930 at 3584.804 kb on - strand, within ABIE40_RS17930 at 3584.833 kb on + strand, within ABIE40_RS17930 at 3584.833 kb on + strand, within ABIE40_RS17930 at 3584.834 kb on - strand, within ABIE40_RS17930 at 3584.884 kb on + strand, within ABIE40_RS17930 at 3584.885 kb on - strand, within ABIE40_RS17930 at 3584.975 kb on - strand at 3584.975 kb on - strand at 3585.021 kb on + strand at 3585.021 kb on + strand at 3585.022 kb on - strand at 3585.022 kb on - strand at 3585.022 kb on - strand at 3585.022 kb on - strand at 3585.068 kb on + strand at 3585.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 3,584,503 - +3.5 3,584,513 + +0.9 3,584,514 - +0.9 3,584,514 - -1.4 3,584,591 + +2.2 3,584,592 - +1.9 3,584,617 + -1.8 3,584,618 - +0.4 3,584,620 + -0.9 3,584,621 - -0.1 3,584,755 + ABIE40_RS17930 0.41 -0.9 3,584,755 + ABIE40_RS17930 0.41 +1.3 3,584,755 + ABIE40_RS17930 0.41 -1.8 3,584,755 + ABIE40_RS17930 0.41 -0.4 3,584,755 + ABIE40_RS17930 0.41 -2.4 3,584,755 + ABIE40_RS17930 0.41 -0.7 3,584,756 - ABIE40_RS17930 0.41 -0.1 3,584,756 - ABIE40_RS17930 0.41 -1.3 3,584,756 - ABIE40_RS17930 0.41 -0.7 3,584,756 - ABIE40_RS17930 0.41 +0.6 3,584,756 - ABIE40_RS17930 0.41 +1.0 3,584,756 - ABIE40_RS17930 0.41 -4.3 3,584,804 - ABIE40_RS17930 0.54 -1.2 3,584,833 + ABIE40_RS17930 0.61 +0.3 3,584,833 + ABIE40_RS17930 0.61 -0.6 3,584,834 - ABIE40_RS17930 0.61 -1.1 3,584,884 + ABIE40_RS17930 0.74 -1.4 3,584,885 - ABIE40_RS17930 0.74 +1.8 3,584,975 - +1.3 3,584,975 - +0.5 3,585,021 + -0.5 3,585,021 + -0.6 3,585,022 - -1.0 3,585,022 - -1.5 3,585,022 - -1.3 3,585,022 - -1.3 3,585,068 + -1.3 3,585,068 + -0.4
Or see this region's nucleotide sequence