Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS06105 and ABIE40_RS06110 are separated by 9 nucleotides ABIE40_RS06110 and ABIE40_RS06115 are separated by 265 nucleotides ABIE40_RS06115 and ABIE40_RS06120 are separated by 115 nucleotides ABIE40_RS06120 and ABIE40_RS06125 are separated by 123 nucleotides
ABIE40_RS06105: ABIE40_RS06105 - MOSC domain-containing protein, at 1,200,286 to 1,201,143
_RS06105
ABIE40_RS06110: ABIE40_RS06110 - HD domain-containing protein, at 1,201,153 to 1,201,797
_RS06110
ABIE40_RS06115: ABIE40_RS06115 - hypothetical protein, at 1,202,063 to 1,202,377
_RS06115
ABIE40_RS06120: ABIE40_RS06120 - superoxide dismutase family protein, at 1,202,493 to 1,203,008
_RS06120
ABIE40_RS06125: ABIE40_RS06125 - hypothetical protein, at 1,203,132 to 1,203,707
_RS06125
Position (kb) 1202
1203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1201.118 kb on + strand at 1201.119 kb on - strand at 1201.119 kb on - strand at 1201.119 kb on - strand at 1201.154 kb on + strand at 1201.154 kb on + strand at 1201.155 kb on - strand at 1201.286 kb on + strand, within ABIE40_RS06110 at 1201.287 kb on - strand, within ABIE40_RS06110 at 1201.337 kb on + strand, within ABIE40_RS06110 at 1201.337 kb on + strand, within ABIE40_RS06110 at 1201.337 kb on + strand, within ABIE40_RS06110 at 1201.338 kb on - strand, within ABIE40_RS06110 at 1201.338 kb on - strand, within ABIE40_RS06110 at 1201.338 kb on - strand, within ABIE40_RS06110 at 1201.367 kb on + strand, within ABIE40_RS06110 at 1201.367 kb on + strand, within ABIE40_RS06110 at 1201.367 kb on + strand, within ABIE40_RS06110 at 1201.367 kb on + strand, within ABIE40_RS06110 at 1201.367 kb on + strand, within ABIE40_RS06110 at 1201.368 kb on + strand, within ABIE40_RS06110 at 1201.368 kb on - strand, within ABIE40_RS06110 at 1201.368 kb on - strand, within ABIE40_RS06110 at 1201.368 kb on - strand, within ABIE40_RS06110 at 1201.368 kb on - strand, within ABIE40_RS06110 at 1201.368 kb on - strand, within ABIE40_RS06110 at 1201.368 kb on - strand, within ABIE40_RS06110 at 1201.503 kb on + strand, within ABIE40_RS06110 at 1201.668 kb on + strand, within ABIE40_RS06110 at 1201.669 kb on - strand, within ABIE40_RS06110 at 1201.746 kb on + strand at 1201.746 kb on + strand at 1201.746 kb on + strand at 1201.746 kb on + strand at 1201.747 kb on - strand at 1201.747 kb on - strand at 1201.747 kb on - strand at 1201.747 kb on - strand at 1201.834 kb on + strand at 1201.834 kb on + strand at 1201.834 kb on + strand at 1201.834 kb on + strand at 1201.835 kb on - strand at 1201.835 kb on - strand at 1201.835 kb on - strand at 1201.948 kb on - strand at 1201.948 kb on - strand at 1201.948 kb on - strand at 1201.955 kb on + strand at 1201.971 kb on + strand at 1201.981 kb on - strand at 1201.981 kb on - strand at 1202.023 kb on + strand at 1202.096 kb on + strand, within ABIE40_RS06115 at 1202.096 kb on + strand, within ABIE40_RS06115 at 1202.096 kb on + strand, within ABIE40_RS06115 at 1202.096 kb on + strand, within ABIE40_RS06115 at 1202.096 kb on + strand, within ABIE40_RS06115 at 1202.097 kb on - strand, within ABIE40_RS06115 at 1202.097 kb on - strand, within ABIE40_RS06115 at 1202.097 kb on - strand, within ABIE40_RS06115 at 1202.102 kb on + strand, within ABIE40_RS06115 at 1202.102 kb on + strand, within ABIE40_RS06115 at 1202.102 kb on + strand, within ABIE40_RS06115 at 1202.103 kb on - strand, within ABIE40_RS06115 at 1202.103 kb on - strand, within ABIE40_RS06115 at 1202.145 kb on + strand, within ABIE40_RS06115 at 1202.145 kb on + strand, within ABIE40_RS06115 at 1202.283 kb on + strand, within ABIE40_RS06115 at 1202.345 kb on + strand, within ABIE40_RS06115 at 1202.345 kb on + strand, within ABIE40_RS06115 at 1202.345 kb on + strand, within ABIE40_RS06115 at 1202.346 kb on - strand at 1202.354 kb on + strand at 1202.354 kb on + strand at 1202.354 kb on + strand at 1202.355 kb on - strand at 1202.375 kb on + strand at 1202.375 kb on + strand at 1202.376 kb on - strand at 1202.376 kb on - strand at 1202.376 kb on - strand at 1202.376 kb on - strand at 1202.376 kb on - strand at 1202.376 kb on - strand at 1202.376 kb on - strand at 1202.396 kb on + strand at 1202.396 kb on + strand at 1202.396 kb on + strand at 1202.396 kb on + strand at 1202.396 kb on + strand at 1202.397 kb on - strand at 1202.397 kb on - strand at 1202.397 kb on - strand at 1202.397 kb on - strand at 1202.398 kb on + strand at 1202.399 kb on - strand at 1202.399 kb on - strand at 1202.832 kb on + strand, within ABIE40_RS06120 at 1202.832 kb on + strand, within ABIE40_RS06120 at 1202.832 kb on + strand, within ABIE40_RS06120 at 1202.832 kb on + strand, within ABIE40_RS06120 at 1202.833 kb on - strand, within ABIE40_RS06120 at 1202.833 kb on - strand, within ABIE40_RS06120 at 1202.833 kb on - strand, within ABIE40_RS06120 at 1202.833 kb on - strand, within ABIE40_RS06120 at 1202.833 kb on - strand, within ABIE40_RS06120 at 1202.873 kb on + strand, within ABIE40_RS06120 at 1202.874 kb on - strand, within ABIE40_RS06120 at 1202.874 kb on - strand, within ABIE40_RS06120 at 1202.874 kb on - strand, within ABIE40_RS06120 at 1202.876 kb on + strand, within ABIE40_RS06120 at 1202.876 kb on + strand, within ABIE40_RS06120 at 1202.876 kb on + strand, within ABIE40_RS06120 at 1202.876 kb on + strand, within ABIE40_RS06120 at 1202.876 kb on + strand, within ABIE40_RS06120 at 1202.877 kb on - strand, within ABIE40_RS06120 at 1202.949 kb on + strand, within ABIE40_RS06120 at 1203.007 kb on - strand at 1203.081 kb on + strand at 1203.139 kb on + strand at 1203.139 kb on + strand at 1203.140 kb on - strand at 1203.140 kb on - strand at 1203.140 kb on - strand at 1203.140 kb on - strand at 1203.140 kb on - strand at 1203.142 kb on + strand at 1203.142 kb on + strand at 1203.142 kb on + strand at 1203.143 kb on - strand at 1203.143 kb on - strand at 1203.145 kb on + strand at 1203.157 kb on + strand at 1203.157 kb on + strand at 1203.157 kb on + strand at 1203.157 kb on + strand at 1203.158 kb on - strand at 1203.346 kb on + strand, within ABIE40_RS06125 at 1203.346 kb on + strand, within ABIE40_RS06125 at 1203.347 kb on - strand, within ABIE40_RS06125 at 1203.364 kb on + strand, within ABIE40_RS06125 at 1203.364 kb on + strand, within ABIE40_RS06125 at 1203.365 kb on - strand, within ABIE40_RS06125
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 1,201,118 + -2.0 1,201,119 - -0.6 1,201,119 - +0.8 1,201,119 - -0.3 1,201,154 + -1.2 1,201,154 + -0.6 1,201,155 - -0.8 1,201,286 + ABIE40_RS06110 0.21 +0.1 1,201,287 - ABIE40_RS06110 0.21 +0.1 1,201,337 + ABIE40_RS06110 0.29 +0.4 1,201,337 + ABIE40_RS06110 0.29 -0.6 1,201,337 + ABIE40_RS06110 0.29 +1.0 1,201,338 - ABIE40_RS06110 0.29 +0.2 1,201,338 - ABIE40_RS06110 0.29 -1.0 1,201,338 - ABIE40_RS06110 0.29 -0.5 1,201,367 + ABIE40_RS06110 0.33 -1.3 1,201,367 + ABIE40_RS06110 0.33 -0.5 1,201,367 + ABIE40_RS06110 0.33 +0.3 1,201,367 + ABIE40_RS06110 0.33 +1.8 1,201,367 + ABIE40_RS06110 0.33 +0.4 1,201,368 + ABIE40_RS06110 0.33 +0.4 1,201,368 - ABIE40_RS06110 0.33 +0.4 1,201,368 - ABIE40_RS06110 0.33 +0.3 1,201,368 - ABIE40_RS06110 0.33 +0.5 1,201,368 - ABIE40_RS06110 0.33 -0.7 1,201,368 - ABIE40_RS06110 0.33 -1.0 1,201,368 - ABIE40_RS06110 0.33 +0.4 1,201,503 + ABIE40_RS06110 0.54 +1.0 1,201,668 + ABIE40_RS06110 0.80 -2.3 1,201,669 - ABIE40_RS06110 0.80 -0.3 1,201,746 + -1.2 1,201,746 + -1.9 1,201,746 + +0.7 1,201,746 + -0.8 1,201,747 - -1.2 1,201,747 - -1.7 1,201,747 - -0.2 1,201,747 - -1.6 1,201,834 + -1.6 1,201,834 + +2.0 1,201,834 + +1.2 1,201,834 + -1.5 1,201,835 - -1.7 1,201,835 - +0.2 1,201,835 - +0.4 1,201,948 - -0.8 1,201,948 - +0.2 1,201,948 - +1.2 1,201,955 + +0.4 1,201,971 + +0.1 1,201,981 - -1.0 1,201,981 - -0.0 1,202,023 + +1.2 1,202,096 + ABIE40_RS06115 0.10 -1.8 1,202,096 + ABIE40_RS06115 0.10 +0.2 1,202,096 + ABIE40_RS06115 0.10 +0.1 1,202,096 + ABIE40_RS06115 0.10 +0.9 1,202,096 + ABIE40_RS06115 0.10 +0.5 1,202,097 - ABIE40_RS06115 0.11 +0.2 1,202,097 - ABIE40_RS06115 0.11 +0.2 1,202,097 - ABIE40_RS06115 0.11 -2.8 1,202,102 + ABIE40_RS06115 0.12 +0.1 1,202,102 + ABIE40_RS06115 0.12 +1.4 1,202,102 + ABIE40_RS06115 0.12 +0.5 1,202,103 - ABIE40_RS06115 0.13 +1.0 1,202,103 - ABIE40_RS06115 0.13 -1.3 1,202,145 + ABIE40_RS06115 0.26 +0.2 1,202,145 + ABIE40_RS06115 0.26 -0.7 1,202,283 + ABIE40_RS06115 0.70 +1.0 1,202,345 + ABIE40_RS06115 0.90 +0.5 1,202,345 + ABIE40_RS06115 0.90 -0.3 1,202,345 + ABIE40_RS06115 0.90 -0.1 1,202,346 - -0.0 1,202,354 + -0.1 1,202,354 + +0.3 1,202,354 + +1.3 1,202,355 - -0.8 1,202,375 + +0.7 1,202,375 + +0.1 1,202,376 - +2.0 1,202,376 - -2.2 1,202,376 - -0.3 1,202,376 - +0.5 1,202,376 - -0.0 1,202,376 - -3.2 1,202,376 - -3.2 1,202,396 + +0.3 1,202,396 + +0.8 1,202,396 + +0.8 1,202,396 + +0.8 1,202,396 + +0.2 1,202,397 - -1.0 1,202,397 - +0.4 1,202,397 - -3.3 1,202,397 - -2.4 1,202,398 + +0.4 1,202,399 - +0.4 1,202,399 - -0.8 1,202,832 + ABIE40_RS06120 0.66 +0.9 1,202,832 + ABIE40_RS06120 0.66 -1.1 1,202,832 + ABIE40_RS06120 0.66 -2.1 1,202,832 + ABIE40_RS06120 0.66 +0.0 1,202,833 - ABIE40_RS06120 0.66 +0.5 1,202,833 - ABIE40_RS06120 0.66 +2.5 1,202,833 - ABIE40_RS06120 0.66 +0.3 1,202,833 - ABIE40_RS06120 0.66 +0.7 1,202,833 - ABIE40_RS06120 0.66 +2.7 1,202,873 + ABIE40_RS06120 0.74 -1.4 1,202,874 - ABIE40_RS06120 0.74 -1.2 1,202,874 - ABIE40_RS06120 0.74 -1.6 1,202,874 - ABIE40_RS06120 0.74 -0.1 1,202,876 + ABIE40_RS06120 0.74 +0.5 1,202,876 + ABIE40_RS06120 0.74 +0.4 1,202,876 + ABIE40_RS06120 0.74 +1.3 1,202,876 + ABIE40_RS06120 0.74 +1.2 1,202,876 + ABIE40_RS06120 0.74 -0.5 1,202,877 - ABIE40_RS06120 0.74 -0.1 1,202,949 + ABIE40_RS06120 0.88 +0.4 1,203,007 - -1.0 1,203,081 + -0.0 1,203,139 + +0.8 1,203,139 + -1.0 1,203,140 - -1.5 1,203,140 - -1.2 1,203,140 - +0.3 1,203,140 - +0.8 1,203,140 - +1.2 1,203,142 + +0.4 1,203,142 + -0.3 1,203,142 + -0.7 1,203,143 - +0.2 1,203,143 - +1.6 1,203,145 + +0.5 1,203,157 + -0.0 1,203,157 + +0.1 1,203,157 + -1.2 1,203,157 + -1.9 1,203,158 - +0.9 1,203,346 + ABIE40_RS06125 0.37 +0.8 1,203,346 + ABIE40_RS06125 0.37 +2.5 1,203,347 - ABIE40_RS06125 0.37 +0.8 1,203,364 + ABIE40_RS06125 0.40 -0.7 1,203,364 + ABIE40_RS06125 0.40 -0.6 1,203,365 - ABIE40_RS06125 0.40 -0.2
Or see this region's nucleotide sequence