Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05375

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS05370 and ABIE40_RS05375 are separated by 108 nucleotidesABIE40_RS05375 and ABIE40_RS05380 are separated by 4 nucleotidesABIE40_RS05380 and ABIE40_RS05385 overlap by 4 nucleotides ABIE40_RS05370: ABIE40_RS05370 - polyprenyl synthetase family protein, at 1,051,707 to 1,052,723 _RS05370 ABIE40_RS05375: ABIE40_RS05375 - DUF2007 domain-containing protein, at 1,052,832 to 1,053,059 _RS05375 ABIE40_RS05380: ABIE40_RS05380 - methyltransferase, at 1,053,064 to 1,053,840 _RS05380 ABIE40_RS05385: ABIE40_RS05385 - Nramp family divalent metal transporter, at 1,053,837 to 1,055,177 _RS05385 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1 2at 1052.761 kb on - strandat 1052.761 kb on - strandat 1052.801 kb on + strandat 1052.843 kb on + strandat 1052.843 kb on + strandat 1052.843 kb on + strandat 1052.844 kb on - strandat 1052.890 kb on + strand, within ABIE40_RS05375at 1052.891 kb on - strand, within ABIE40_RS05375at 1053.310 kb on + strand, within ABIE40_RS05380at 1053.311 kb on - strand, within ABIE40_RS05380at 1053.462 kb on + strand, within ABIE40_RS05380at 1053.463 kb on - strand, within ABIE40_RS05380at 1053.826 kb on + strandat 1053.826 kb on + strandat 1053.826 kb on + strandat 1053.826 kb on + strandat 1053.827 kb on - strandat 1053.827 kb on - strandat 1053.827 kb on - strandat 1053.827 kb on - strandat 1053.902 kb on - strandat 1054.055 kb on - strand, within ABIE40_RS05385

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
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1,052,761 - -0.9
1,052,761 - +0.5
1,052,801 + +0.2
1,052,843 + -1.1
1,052,843 + +0.4
1,052,843 + -0.8
1,052,844 - +0.4
1,052,890 + ABIE40_RS05375 0.25 +2.3
1,052,891 - ABIE40_RS05375 0.26 +0.9
1,053,310 + ABIE40_RS05380 0.32 -0.6
1,053,311 - ABIE40_RS05380 0.32 -0.1
1,053,462 + ABIE40_RS05380 0.51 +0.3
1,053,463 - ABIE40_RS05380 0.51 +0.6
1,053,826 + +1.9
1,053,826 + +1.4
1,053,826 + -1.6
1,053,826 + -2.6
1,053,827 - -2.3
1,053,827 - -0.9
1,053,827 - +0.4
1,053,827 - -0.1
1,053,902 - +1.9
1,054,055 - ABIE40_RS05385 0.16 +0.9

Or see this region's nucleotide sequence