Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03440 and ABIE40_RS03445 are separated by 57 nucleotides ABIE40_RS03445 and ABIE40_RS03450 are separated by 1 nucleotides ABIE40_RS03450 and ABIE40_RS03455 are separated by 236 nucleotides
ABIE40_RS03440: ABIE40_RS03440 - RlmE family RNA methyltransferase, at 683,807 to 684,526
_RS03440
ABIE40_RS03445: ABIE40_RS03445 - VOC family protein, at 684,584 to 684,967
_RS03445
ABIE40_RS03450: ABIE40_RS03450 - DHA2 family efflux MFS transporter permease subunit, at 684,969 to 686,393
_RS03450
ABIE40_RS03455: ABIE40_RS03455 - MBL fold metallo-hydrolase, at 686,630 to 687,619
_RS03455
Position (kb) 684
685
686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 684.551 kb on - strand at 684.551 kb on - strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.638 kb on + strand, within ABIE40_RS03445 at 684.638 kb on + strand, within ABIE40_RS03445 at 684.639 kb on - strand, within ABIE40_RS03445 at 684.639 kb on - strand, within ABIE40_RS03445 at 684.639 kb on - strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.911 kb on + strand, within ABIE40_RS03445 at 684.911 kb on + strand, within ABIE40_RS03445 at 684.912 kb on - strand, within ABIE40_RS03445 at 684.912 kb on - strand, within ABIE40_RS03445 at 684.912 kb on - strand, within ABIE40_RS03445 at 684.970 kb on + strand at 684.971 kb on - strand at 684.971 kb on - strand at 684.971 kb on - strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.109 kb on - strand at 685.109 kb on - strand at 685.118 kb on + strand, within ABIE40_RS03450 at 685.119 kb on - strand, within ABIE40_RS03450 at 685.156 kb on + strand, within ABIE40_RS03450 at 685.156 kb on + strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.379 kb on + strand, within ABIE40_RS03450 at 685.687 kb on + strand, within ABIE40_RS03450 at 685.687 kb on + strand, within ABIE40_RS03450 at 685.727 kb on + strand, within ABIE40_RS03450 at 685.815 kb on + strand, within ABIE40_RS03450 at 685.816 kb on - strand, within ABIE40_RS03450 at 685.816 kb on - strand, within ABIE40_RS03450 at 685.904 kb on + strand, within ABIE40_RS03450 at 685.905 kb on - strand, within ABIE40_RS03450 at 685.933 kb on + strand, within ABIE40_RS03450 at 685.933 kb on + strand, within ABIE40_RS03450 at 685.933 kb on + strand, within ABIE40_RS03450 at 685.934 kb on - strand, within ABIE40_RS03450 at 685.934 kb on - strand, within ABIE40_RS03450 at 685.934 kb on - strand, within ABIE40_RS03450 at 685.934 kb on - strand, within ABIE40_RS03450 at 685.934 kb on - strand, within ABIE40_RS03450 at 685.934 kb on - strand, within ABIE40_RS03450 at 685.934 kb on - strand, within ABIE40_RS03450 at 686.013 kb on + strand, within ABIE40_RS03450 at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.251 kb on + strand at 686.252 kb on - strand at 686.252 kb on - strand at 686.252 kb on - strand at 686.252 kb on - strand at 686.252 kb on - strand at 686.252 kb on - strand at 686.252 kb on - strand at 686.252 kb on - strand at 686.255 kb on - strand at 686.437 kb on - strand at 686.447 kb on + strand at 686.447 kb on + strand at 686.448 kb on - strand at 686.480 kb on + strand at 686.481 kb on - strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.544 kb on + strand at 686.545 kb on - strand at 686.545 kb on - strand at 686.545 kb on - strand at 686.545 kb on - strand at 686.545 kb on - strand at 686.545 kb on - strand at 686.545 kb on - strand at 686.550 kb on + strand at 686.551 kb on - strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.627 kb on + strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.628 kb on - strand at 686.629 kb on + strand at 686.629 kb on + strand at 686.629 kb on + strand at 686.630 kb on - strand at 686.630 kb on - strand at 686.630 kb on - strand at 686.740 kb on + strand, within ABIE40_RS03455 at 686.740 kb on + strand, within ABIE40_RS03455 at 686.746 kb on + strand, within ABIE40_RS03455 at 686.747 kb on - strand, within ABIE40_RS03455 at 686.747 kb on - strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.089 kb on - strand, within ABIE40_RS03455 at 687.089 kb on - strand, within ABIE40_RS03455 at 687.103 kb on + strand, within ABIE40_RS03455 at 687.153 kb on - strand, within ABIE40_RS03455 at 687.153 kb on - strand, within ABIE40_RS03455 at 687.153 kb on - strand, within ABIE40_RS03455 at 687.173 kb on + strand, within ABIE40_RS03455 at 687.174 kb on - strand, within ABIE40_RS03455 at 687.307 kb on + strand, within ABIE40_RS03455 at 687.307 kb on + strand, within ABIE40_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 684,551 - +2.7 684,551 - -0.8 684,583 + +0.3 684,583 + +0.4 684,583 + -3.6 684,583 + +1.9 684,583 + +0.8 684,583 + -0.9 684,583 + +0.0 684,583 + +0.0 684,583 + +0.2 684,583 + -0.2 684,583 + +0.2 684,583 + -0.7 684,584 - -1.1 684,584 - -0.3 684,584 - -0.5 684,584 - -0.1 684,584 - +0.7 684,584 - +1.3 684,584 - +1.0 684,584 - -0.3 684,584 - -0.9 684,593 + +0.1 684,593 + +1.0 684,593 + +0.2 684,593 + +0.4 684,593 + +1.0 684,594 - +3.4 684,594 - +0.0 684,594 - +0.7 684,594 - +0.7 684,594 - -1.3 684,594 - +1.2 684,594 - -0.1 684,594 - -0.3 684,594 - +1.9 684,594 - -0.1 684,638 + ABIE40_RS03445 0.14 +0.6 684,638 + ABIE40_RS03445 0.14 +0.3 684,639 - ABIE40_RS03445 0.14 -0.3 684,639 - ABIE40_RS03445 0.14 -0.1 684,639 - ABIE40_RS03445 0.14 -2.2 684,830 + ABIE40_RS03445 0.64 -0.8 684,830 + ABIE40_RS03445 0.64 +0.7 684,830 + ABIE40_RS03445 0.64 +1.3 684,830 + ABIE40_RS03445 0.64 +1.1 684,831 - ABIE40_RS03445 0.64 -0.9 684,831 - ABIE40_RS03445 0.64 -0.4 684,831 - ABIE40_RS03445 0.64 -1.3 684,831 - ABIE40_RS03445 0.64 +0.8 684,831 - ABIE40_RS03445 0.64 +0.3 684,831 - ABIE40_RS03445 0.64 +0.3 684,911 + ABIE40_RS03445 0.85 -0.4 684,911 + ABIE40_RS03445 0.85 +0.4 684,912 - ABIE40_RS03445 0.85 -0.7 684,912 - ABIE40_RS03445 0.85 -0.2 684,912 - ABIE40_RS03445 0.85 +0.7 684,970 + +0.4 684,971 - -2.0 684,971 - +1.6 684,971 - +0.4 685,108 + +1.7 685,108 + +0.3 685,108 + -0.6 685,108 + +0.5 685,108 + -1.2 685,109 - +0.4 685,109 - -1.0 685,118 + ABIE40_RS03450 0.10 -0.6 685,119 - ABIE40_RS03450 0.11 -1.5 685,156 + ABIE40_RS03450 0.13 -0.3 685,156 + ABIE40_RS03450 0.13 -1.0 685,157 - ABIE40_RS03450 0.13 +0.7 685,157 - ABIE40_RS03450 0.13 -0.4 685,157 - ABIE40_RS03450 0.13 -0.7 685,157 - ABIE40_RS03450 0.13 +0.5 685,157 - ABIE40_RS03450 0.13 -1.1 685,379 + ABIE40_RS03450 0.29 -0.2 685,687 + ABIE40_RS03450 0.50 -2.0 685,687 + ABIE40_RS03450 0.50 +1.0 685,727 + ABIE40_RS03450 0.53 +0.7 685,815 + ABIE40_RS03450 0.59 -0.5 685,816 - ABIE40_RS03450 0.59 +0.2 685,816 - ABIE40_RS03450 0.59 -1.5 685,904 + ABIE40_RS03450 0.66 -2.0 685,905 - ABIE40_RS03450 0.66 -0.2 685,933 + ABIE40_RS03450 0.68 -1.9 685,933 + ABIE40_RS03450 0.68 -2.7 685,933 + ABIE40_RS03450 0.68 -2.2 685,934 - ABIE40_RS03450 0.68 +0.3 685,934 - ABIE40_RS03450 0.68 -0.8 685,934 - ABIE40_RS03450 0.68 -0.5 685,934 - ABIE40_RS03450 0.68 +1.2 685,934 - ABIE40_RS03450 0.68 -1.3 685,934 - ABIE40_RS03450 0.68 -0.9 685,934 - ABIE40_RS03450 0.68 +0.9 686,013 + ABIE40_RS03450 0.73 +1.9 686,251 + +1.1 686,251 + -1.0 686,251 + -2.6 686,251 + -0.7 686,251 + -1.0 686,251 + -2.9 686,251 + +0.4 686,251 + -0.2 686,251 + -0.3 686,251 + -2.2 686,251 + +0.6 686,251 + -0.1 686,252 - -2.1 686,252 - -0.5 686,252 - -0.8 686,252 - +0.1 686,252 - -0.1 686,252 - -0.5 686,252 - -1.7 686,252 - +0.3 686,255 - -1.5 686,437 - +0.3 686,447 + +0.4 686,447 + +2.3 686,448 - -2.5 686,480 + +0.9 686,481 - -1.5 686,544 + +0.9 686,544 + -2.8 686,544 + +0.6 686,544 + -0.5 686,544 + +0.2 686,544 + -0.6 686,544 + -0.7 686,544 + -0.2 686,544 + -2.7 686,544 + +0.6 686,545 - -0.7 686,545 - +0.9 686,545 - +0.0 686,545 - +1.9 686,545 - +2.1 686,545 - -0.3 686,545 - +1.9 686,550 + +0.1 686,551 - +0.2 686,627 + +0.5 686,627 + +0.1 686,627 + -0.3 686,627 + -0.7 686,627 + -0.7 686,627 + +1.9 686,627 + -0.9 686,627 + +1.1 686,627 + -0.6 686,627 + -1.3 686,627 + -2.2 686,627 + +0.2 686,627 + -2.5 686,628 - +2.4 686,628 - +0.3 686,628 - -1.1 686,628 - +0.7 686,628 - +1.9 686,628 - -0.4 686,628 - -0.0 686,628 - -2.3 686,628 - -0.1 686,628 - +1.5 686,628 - +0.5 686,628 - -1.2 686,629 + -0.2 686,629 + +2.0 686,629 + +0.9 686,630 - -1.2 686,630 - -0.9 686,630 - -1.0 686,740 + ABIE40_RS03455 0.11 -0.9 686,740 + ABIE40_RS03455 0.11 -1.4 686,746 + ABIE40_RS03455 0.12 -0.8 686,747 - ABIE40_RS03455 0.12 -1.0 686,747 - ABIE40_RS03455 0.12 -1.5 686,933 + ABIE40_RS03455 0.31 +1.3 686,933 + ABIE40_RS03455 0.31 +0.7 686,933 + ABIE40_RS03455 0.31 -0.3 686,933 + ABIE40_RS03455 0.31 -0.2 686,933 + ABIE40_RS03455 0.31 -3.0 686,933 + ABIE40_RS03455 0.31 -0.2 686,934 - ABIE40_RS03455 0.31 +0.3 686,934 - ABIE40_RS03455 0.31 +0.3 686,934 - ABIE40_RS03455 0.31 -0.2 686,934 - ABIE40_RS03455 0.31 -0.7 686,934 - ABIE40_RS03455 0.31 -1.2 687,088 + ABIE40_RS03455 0.46 -1.0 687,088 + ABIE40_RS03455 0.46 +0.4 687,088 + ABIE40_RS03455 0.46 -0.8 687,088 + ABIE40_RS03455 0.46 -1.7 687,088 + ABIE40_RS03455 0.46 +0.5 687,089 - ABIE40_RS03455 0.46 +0.0 687,089 - ABIE40_RS03455 0.46 -2.1 687,103 + ABIE40_RS03455 0.48 +0.6 687,153 - ABIE40_RS03455 0.53 -0.4 687,153 - ABIE40_RS03455 0.53 -0.3 687,153 - ABIE40_RS03455 0.53 -0.4 687,173 + ABIE40_RS03455 0.55 +0.1 687,174 - ABIE40_RS03455 0.55 -0.7 687,307 + ABIE40_RS03455 0.68 +1.2 687,307 + ABIE40_RS03455 0.68 -0.4
Or see this region's nucleotide sequence