Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01595

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01590 and ABIE40_RS01595 are separated by 10 nucleotidesABIE40_RS01595 and ABIE40_RS01600 are separated by 193 nucleotides ABIE40_RS01590: ABIE40_RS01590 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 314,108 to 314,998 _RS01590 ABIE40_RS01595: ABIE40_RS01595 - enoyl-CoA hydratase, at 315,009 to 315,782 _RS01595 ABIE40_RS01600: ABIE40_RS01600 - 30S ribosomal protein S20, at 315,976 to 316,255 _RS01600 Position (kb) 315 316Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 314.017 kb on - strandat 314.017 kb on - strandat 314.017 kb on - strandat 314.023 kb on - strandat 314.023 kb on - strandat 314.059 kb on - strandat 314.059 kb on - strandat 314.093 kb on + strandat 314.094 kb on - strandat 314.094 kb on - strandat 314.094 kb on - strandat 314.283 kb on - strand, within ABIE40_RS01590at 314.283 kb on - strand, within ABIE40_RS01590at 314.283 kb on - strand, within ABIE40_RS01590at 314.350 kb on + strand, within ABIE40_RS01590at 314.351 kb on - strand, within ABIE40_RS01590at 314.352 kb on + strand, within ABIE40_RS01590at 314.353 kb on - strand, within ABIE40_RS01590at 314.353 kb on - strand, within ABIE40_RS01590at 314.353 kb on - strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.474 kb on - strand, within ABIE40_RS01590at 314.474 kb on - strand, within ABIE40_RS01590at 314.503 kb on + strand, within ABIE40_RS01590at 314.588 kb on + strand, within ABIE40_RS01590at 314.588 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.672 kb on - strand, within ABIE40_RS01590at 314.672 kb on - strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.812 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.930 kb on - strandat 314.935 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 315.015 kb on + strandat 315.015 kb on + strandat 315.015 kb on + strandat 315.015 kb on + strandat 315.016 kb on - strandat 315.126 kb on + strand, within ABIE40_RS01595at 315.127 kb on - strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.240 kb on - strand, within ABIE40_RS01595at 315.240 kb on - strand, within ABIE40_RS01595at 315.240 kb on - strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 316.253 kb on + strandat 316.253 kb on + strandat 316.253 kb on + strandat 316.340 kb on + strandat 316.686 kb on + strandat 316.693 kb on + strandat 316.778 kb on + strandat 316.778 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
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314,017 - -0.4
314,017 - -0.7
314,017 - -0.2
314,023 - +0.7
314,023 - -0.6
314,059 - +1.0
314,059 - -1.7
314,093 + -1.3
314,094 - -0.7
314,094 - +0.7
314,094 - -0.5
314,283 - ABIE40_RS01590 0.20 -0.4
314,283 - ABIE40_RS01590 0.20 -0.9
314,283 - ABIE40_RS01590 0.20 -1.4
314,350 + ABIE40_RS01590 0.27 -1.2
314,351 - ABIE40_RS01590 0.27 -0.6
314,352 + ABIE40_RS01590 0.27 -1.4
314,353 - ABIE40_RS01590 0.27 +1.3
314,353 - ABIE40_RS01590 0.27 -1.2
314,353 - ABIE40_RS01590 0.27 +0.6
314,471 + ABIE40_RS01590 0.41 -0.6
314,471 + ABIE40_RS01590 0.41 -1.8
314,471 + ABIE40_RS01590 0.41 +1.0
314,471 + ABIE40_RS01590 0.41 -1.1
314,471 + ABIE40_RS01590 0.41 +3.1
314,472 - ABIE40_RS01590 0.41 -1.3
314,472 - ABIE40_RS01590 0.41 +0.7
314,472 - ABIE40_RS01590 0.41 -0.5
314,472 - ABIE40_RS01590 0.41 +0.5
314,472 - ABIE40_RS01590 0.41 +4.0
314,472 - ABIE40_RS01590 0.41 +0.0
314,472 - ABIE40_RS01590 0.41 -0.3
314,472 - ABIE40_RS01590 0.41 -0.3
314,472 - ABIE40_RS01590 0.41 -0.8
314,472 - ABIE40_RS01590 0.41 -0.6
314,472 - ABIE40_RS01590 0.41 +2.4
314,474 - ABIE40_RS01590 0.41 -2.4
314,474 - ABIE40_RS01590 0.41 -0.4
314,503 + ABIE40_RS01590 0.44 -1.2
314,588 + ABIE40_RS01590 0.54 +0.0
314,588 + ABIE40_RS01590 0.54 -0.6
314,671 + ABIE40_RS01590 0.63 -0.0
314,671 + ABIE40_RS01590 0.63 -1.0
314,671 + ABIE40_RS01590 0.63 +0.2
314,671 + ABIE40_RS01590 0.63 -0.1
314,672 - ABIE40_RS01590 0.63 -1.3
314,672 - ABIE40_RS01590 0.63 -0.3
314,675 + ABIE40_RS01590 0.64 -1.2
314,675 + ABIE40_RS01590 0.64 -1.6
314,675 + ABIE40_RS01590 0.64 -1.6
314,675 + ABIE40_RS01590 0.64 -0.2
314,675 + ABIE40_RS01590 0.64 -0.4
314,675 + ABIE40_RS01590 0.64 -0.2
314,675 + ABIE40_RS01590 0.64 -0.4
314,675 + ABIE40_RS01590 0.64 -0.9
314,675 + ABIE40_RS01590 0.64 -1.6
314,675 + ABIE40_RS01590 0.64 -0.4
314,675 + ABIE40_RS01590 0.64 -1.2
314,675 + ABIE40_RS01590 0.64 +0.2
314,675 + ABIE40_RS01590 0.64 -3.3
314,675 + ABIE40_RS01590 0.64 +1.0
314,675 + ABIE40_RS01590 0.64 -2.3
314,675 + ABIE40_RS01590 0.64 -0.4
314,676 - ABIE40_RS01590 0.64 -0.2
314,676 - ABIE40_RS01590 0.64 -1.0
314,676 - ABIE40_RS01590 0.64 +0.3
314,676 - ABIE40_RS01590 0.64 -0.5
314,676 - ABIE40_RS01590 0.64 +0.9
314,676 - ABIE40_RS01590 0.64 +0.9
314,676 - ABIE40_RS01590 0.64 +0.8
314,676 - ABIE40_RS01590 0.64 -0.5
314,676 - ABIE40_RS01590 0.64 -0.3
314,676 - ABIE40_RS01590 0.64 +0.1
314,676 - ABIE40_RS01590 0.64 +0.4
314,676 - ABIE40_RS01590 0.64 -0.2
314,676 - ABIE40_RS01590 0.64 +0.1
314,676 - ABIE40_RS01590 0.64 -0.9
314,676 - ABIE40_RS01590 0.64 -1.0
314,676 - ABIE40_RS01590 0.64 +0.0
314,812 + ABIE40_RS01590 0.79 -0.6
314,891 + ABIE40_RS01590 0.88 +0.8
314,891 + ABIE40_RS01590 0.88 +1.2
314,891 + ABIE40_RS01590 0.88 +1.0
314,891 + ABIE40_RS01590 0.88 -0.5
314,892 - ABIE40_RS01590 0.88 +2.0
314,892 - ABIE40_RS01590 0.88 -0.6
314,892 - ABIE40_RS01590 0.88 -1.4
314,892 - ABIE40_RS01590 0.88 -2.6
314,892 - ABIE40_RS01590 0.88 -0.3
314,930 - -1.4
314,935 + +0.1
314,975 + -1.0
314,975 + -0.3
314,975 + +0.3
314,975 + -0.2
314,975 + -0.6
314,975 + -0.5
314,976 - -1.4
314,976 - -0.2
314,976 - +1.2
314,976 - +0.2
314,976 - -0.0
314,976 - -1.4
314,976 - +0.1
315,015 + -1.0
315,015 + -0.0
315,015 + -3.3
315,015 + -0.5
315,016 - -0.2
315,126 + ABIE40_RS01595 0.15 -0.3
315,127 - ABIE40_RS01595 0.15 -0.9
315,239 + ABIE40_RS01595 0.30 +1.0
315,239 + ABIE40_RS01595 0.30 +0.1
315,239 + ABIE40_RS01595 0.30 -0.7
315,239 + ABIE40_RS01595 0.30 +0.9
315,239 + ABIE40_RS01595 0.30 -0.3
315,239 + ABIE40_RS01595 0.30 -1.0
315,239 + ABIE40_RS01595 0.30 -0.3
315,239 + ABIE40_RS01595 0.30 -1.4
315,239 + ABIE40_RS01595 0.30 -1.0
315,240 - ABIE40_RS01595 0.30 -2.5
315,240 - ABIE40_RS01595 0.30 -0.4
315,240 - ABIE40_RS01595 0.30 -1.0
315,241 + ABIE40_RS01595 0.30 -0.1
315,241 + ABIE40_RS01595 0.30 +0.4
315,241 + ABIE40_RS01595 0.30 -0.6
315,241 + ABIE40_RS01595 0.30 +1.8
315,241 + ABIE40_RS01595 0.30 +0.2
315,241 + ABIE40_RS01595 0.30 -1.1
315,241 + ABIE40_RS01595 0.30 -0.1
315,242 - ABIE40_RS01595 0.30 -0.0
315,242 - ABIE40_RS01595 0.30 -0.1
315,242 - ABIE40_RS01595 0.30 -0.2
315,242 - ABIE40_RS01595 0.30 -0.6
315,242 - ABIE40_RS01595 0.30 -1.8
315,242 - ABIE40_RS01595 0.30 +2.0
315,242 - ABIE40_RS01595 0.30 -1.9
315,242 - ABIE40_RS01595 0.30 +3.5
315,242 - ABIE40_RS01595 0.30 -0.0
315,242 - ABIE40_RS01595 0.30 +0.4
315,242 - ABIE40_RS01595 0.30 -0.6
315,242 - ABIE40_RS01595 0.30 -1.7
315,242 - ABIE40_RS01595 0.30 -0.8
315,242 - ABIE40_RS01595 0.30 -2.2
315,242 - ABIE40_RS01595 0.30 -1.9
315,242 - ABIE40_RS01595 0.30 -1.9
315,242 - ABIE40_RS01595 0.30 -2.9
315,242 - ABIE40_RS01595 0.30 -1.3
315,242 - ABIE40_RS01595 0.30 +1.0
315,242 - ABIE40_RS01595 0.30 -1.6
315,243 + ABIE40_RS01595 0.30 -0.3
315,243 + ABIE40_RS01595 0.30 +0.7
315,243 + ABIE40_RS01595 0.30 -0.0
315,243 + ABIE40_RS01595 0.30 -0.7
315,243 + ABIE40_RS01595 0.30 -0.1
315,243 + ABIE40_RS01595 0.30 +0.0
315,243 + ABIE40_RS01595 0.30 +0.1
315,243 + ABIE40_RS01595 0.30 -0.9
315,243 + ABIE40_RS01595 0.30 -2.0
315,243 + ABIE40_RS01595 0.30 -1.5
315,243 + ABIE40_RS01595 0.30 +0.4
315,243 + ABIE40_RS01595 0.30 +0.4
315,243 + ABIE40_RS01595 0.30 +0.3
315,243 + ABIE40_RS01595 0.30 -1.0
315,243 + ABIE40_RS01595 0.30 +0.4
315,244 - ABIE40_RS01595 0.30 -1.8
315,244 - ABIE40_RS01595 0.30 -0.6
315,244 - ABIE40_RS01595 0.30 +2.3
315,244 - ABIE40_RS01595 0.30 -0.4
315,244 - ABIE40_RS01595 0.30 +1.0
315,245 + ABIE40_RS01595 0.30 -0.0
315,245 + ABIE40_RS01595 0.30 -0.1
315,245 + ABIE40_RS01595 0.30 +0.6
315,245 + ABIE40_RS01595 0.30 +0.2
315,245 + ABIE40_RS01595 0.30 +0.2
315,245 + ABIE40_RS01595 0.30 +0.7
315,245 + ABIE40_RS01595 0.30 -2.2
315,245 + ABIE40_RS01595 0.30 +0.2
315,246 - ABIE40_RS01595 0.31 -2.9
315,246 - ABIE40_RS01595 0.31 -2.8
315,246 - ABIE40_RS01595 0.31 -0.7
315,246 - ABIE40_RS01595 0.31 -0.6
315,246 - ABIE40_RS01595 0.31 -0.6
315,246 - ABIE40_RS01595 0.31 -1.8
315,246 - ABIE40_RS01595 0.31 -3.8
315,246 - ABIE40_RS01595 0.31 -0.7
315,246 - ABIE40_RS01595 0.31 -0.4
315,246 - ABIE40_RS01595 0.31 +1.2
315,246 - ABIE40_RS01595 0.31 +1.0
315,246 - ABIE40_RS01595 0.31 -2.4
316,253 + +1.4
316,253 + +0.8
316,253 + +1.0
316,340 + -0.6
316,686 + +0.8
316,693 + -0.6
316,778 + -1.0
316,778 + +0.0

Or see this region's nucleotide sequence