Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01175 and ABIE40_RS01180 are separated by 0 nucleotides ABIE40_RS01180 and ABIE40_RS01185 overlap by 8 nucleotides ABIE40_RS01185 and ABIE40_RS01190 overlap by 4 nucleotides ABIE40_RS01190 and ABIE40_RS01195 are separated by 27 nucleotides
ABIE40_RS01175: ABIE40_RS01175 - Gfo/Idh/MocA family oxidoreductase, at 233,603 to 234,589
_RS01175
ABIE40_RS01180: ABIE40_RS01180 - GtrA family protein, at 234,590 to 234,982
_RS01180
ABIE40_RS01185: ABIE40_RS01185 - transporter, at 234,975 to 235,352
_RS01185
ABIE40_RS01190: ABIE40_RS01190 - class I SAM-dependent methyltransferase, at 235,349 to 236,053
_RS01190
ABIE40_RS01195: ABIE40_RS01195 - glycosyltransferase, at 236,081 to 237,082
_RS01195
Position (kb) 234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.978 kb on + strand, within ABIE40_RS01175 at 233.978 kb on + strand, within ABIE40_RS01175 at 233.978 kb on + strand, within ABIE40_RS01175 at 233.978 kb on + strand, within ABIE40_RS01175 at 233.979 kb on - strand, within ABIE40_RS01175 at 233.979 kb on - strand, within ABIE40_RS01175 at 233.979 kb on - strand, within ABIE40_RS01175 at 233.979 kb on - strand, within ABIE40_RS01175 at 233.979 kb on - strand, within ABIE40_RS01175 at 233.979 kb on - strand, within ABIE40_RS01175 at 234.062 kb on + strand, within ABIE40_RS01175 at 234.062 kb on + strand, within ABIE40_RS01175 at 234.063 kb on - strand, within ABIE40_RS01175 at 234.063 kb on - strand, within ABIE40_RS01175 at 234.063 kb on - strand, within ABIE40_RS01175 at 234.230 kb on + strand, within ABIE40_RS01175 at 234.230 kb on + strand, within ABIE40_RS01175 at 234.230 kb on + strand, within ABIE40_RS01175 at 234.230 kb on + strand, within ABIE40_RS01175 at 234.230 kb on + strand, within ABIE40_RS01175 at 234.231 kb on - strand, within ABIE40_RS01175 at 234.231 kb on - strand, within ABIE40_RS01175 at 234.275 kb on + strand, within ABIE40_RS01175 at 234.275 kb on + strand, within ABIE40_RS01175 at 234.275 kb on + strand, within ABIE40_RS01175 at 234.276 kb on - strand, within ABIE40_RS01175 at 234.276 kb on - strand, within ABIE40_RS01175 at 234.711 kb on + strand, within ABIE40_RS01180 at 234.712 kb on - strand, within ABIE40_RS01180 at 234.712 kb on - strand, within ABIE40_RS01180 at 234.712 kb on - strand, within ABIE40_RS01180 at 234.720 kb on + strand, within ABIE40_RS01180 at 234.720 kb on + strand, within ABIE40_RS01180 at 234.720 kb on + strand, within ABIE40_RS01180 at 234.739 kb on + strand, within ABIE40_RS01180 at 234.739 kb on + strand, within ABIE40_RS01180 at 234.740 kb on - strand, within ABIE40_RS01180 at 234.778 kb on + strand, within ABIE40_RS01180 at 234.778 kb on + strand, within ABIE40_RS01180 at 234.778 kb on + strand, within ABIE40_RS01180 at 234.779 kb on - strand, within ABIE40_RS01180 at 234.779 kb on - strand, within ABIE40_RS01180 at 234.779 kb on - strand, within ABIE40_RS01180 at 234.944 kb on + strand at 234.945 kb on - strand at 234.945 kb on - strand at 234.995 kb on + strand at 234.995 kb on + strand at 234.996 kb on - strand at 234.996 kb on - strand at 234.996 kb on - strand at 234.996 kb on - strand at 235.027 kb on + strand, within ABIE40_RS01185 at 235.027 kb on + strand, within ABIE40_RS01185 at 235.027 kb on + strand, within ABIE40_RS01185 at 235.028 kb on - strand, within ABIE40_RS01185 at 235.105 kb on + strand, within ABIE40_RS01185 at 235.106 kb on - strand, within ABIE40_RS01185 at 235.115 kb on + strand, within ABIE40_RS01185 at 235.116 kb on - strand, within ABIE40_RS01185 at 235.116 kb on - strand, within ABIE40_RS01185 at 235.116 kb on - strand, within ABIE40_RS01185 at 235.138 kb on + strand, within ABIE40_RS01185 at 235.139 kb on - strand, within ABIE40_RS01185 at 235.139 kb on - strand, within ABIE40_RS01185 at 235.166 kb on - strand, within ABIE40_RS01185 at 235.212 kb on + strand, within ABIE40_RS01185 at 235.212 kb on + strand, within ABIE40_RS01185 at 235.212 kb on + strand, within ABIE40_RS01185 at 235.213 kb on - strand, within ABIE40_RS01185 at 235.360 kb on + strand at 235.360 kb on + strand at 235.360 kb on + strand at 235.360 kb on + strand at 235.361 kb on - strand at 235.361 kb on - strand at 235.394 kb on + strand at 235.394 kb on + strand at 235.394 kb on + strand at 235.394 kb on + strand at 235.394 kb on + strand at 235.394 kb on + strand at 235.394 kb on + strand at 235.395 kb on - strand at 235.395 kb on - strand at 235.395 kb on - strand at 235.395 kb on - strand at 235.395 kb on - strand at 235.396 kb on + strand at 235.410 kb on + strand at 235.421 kb on + strand, within ABIE40_RS01190 at 235.453 kb on + strand, within ABIE40_RS01190 at 235.453 kb on + strand, within ABIE40_RS01190 at 235.454 kb on - strand, within ABIE40_RS01190 at 235.454 kb on - strand, within ABIE40_RS01190 at 235.454 kb on - strand, within ABIE40_RS01190 at 235.454 kb on - strand, within ABIE40_RS01190 at 235.454 kb on - strand, within ABIE40_RS01190 at 235.455 kb on + strand, within ABIE40_RS01190 at 235.455 kb on + strand, within ABIE40_RS01190 at 235.488 kb on + strand, within ABIE40_RS01190 at 235.489 kb on - strand, within ABIE40_RS01190 at 235.540 kb on + strand, within ABIE40_RS01190 at 235.586 kb on + strand, within ABIE40_RS01190 at 235.586 kb on + strand, within ABIE40_RS01190 at 235.586 kb on + strand, within ABIE40_RS01190 at 235.587 kb on - strand, within ABIE40_RS01190 at 235.587 kb on - strand, within ABIE40_RS01190 at 235.587 kb on - strand, within ABIE40_RS01190 at 235.659 kb on + strand, within ABIE40_RS01190 at 235.659 kb on + strand, within ABIE40_RS01190 at 235.660 kb on - strand, within ABIE40_RS01190 at 235.660 kb on - strand, within ABIE40_RS01190 at 235.660 kb on - strand, within ABIE40_RS01190 at 235.711 kb on + strand, within ABIE40_RS01190 at 235.712 kb on - strand, within ABIE40_RS01190 at 235.884 kb on + strand, within ABIE40_RS01190 at 235.884 kb on + strand, within ABIE40_RS01190 at 235.885 kb on - strand, within ABIE40_RS01190 at 235.953 kb on - strand, within ABIE40_RS01190 at 236.018 kb on + strand at 236.019 kb on - strand at 236.019 kb on - strand at 236.169 kb on + strand at 236.170 kb on - strand at 236.170 kb on - strand at 236.176 kb on + strand at 236.176 kb on + strand at 236.176 kb on + strand at 236.177 kb on - strand at 236.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 233,978 + ABIE40_RS01175 0.38 +1.5 233,978 + ABIE40_RS01175 0.38 +0.1 233,978 + ABIE40_RS01175 0.38 -1.0 233,978 + ABIE40_RS01175 0.38 -0.6 233,979 - ABIE40_RS01175 0.38 -0.7 233,979 - ABIE40_RS01175 0.38 -0.5 233,979 - ABIE40_RS01175 0.38 -2.8 233,979 - ABIE40_RS01175 0.38 -1.3 233,979 - ABIE40_RS01175 0.38 +0.2 233,979 - ABIE40_RS01175 0.38 -0.6 234,062 + ABIE40_RS01175 0.47 +0.8 234,062 + ABIE40_RS01175 0.47 -1.0 234,063 - ABIE40_RS01175 0.47 +0.0 234,063 - ABIE40_RS01175 0.47 -0.4 234,063 - ABIE40_RS01175 0.47 +1.0 234,230 + ABIE40_RS01175 0.64 -2.0 234,230 + ABIE40_RS01175 0.64 -0.4 234,230 + ABIE40_RS01175 0.64 -0.5 234,230 + ABIE40_RS01175 0.64 +1.7 234,230 + ABIE40_RS01175 0.64 -0.4 234,231 - ABIE40_RS01175 0.64 -1.9 234,231 - ABIE40_RS01175 0.64 -0.5 234,275 + ABIE40_RS01175 0.68 -2.2 234,275 + ABIE40_RS01175 0.68 -1.3 234,275 + ABIE40_RS01175 0.68 +0.3 234,276 - ABIE40_RS01175 0.68 -1.3 234,276 - ABIE40_RS01175 0.68 +1.1 234,711 + ABIE40_RS01180 0.31 +0.4 234,712 - ABIE40_RS01180 0.31 +0.0 234,712 - ABIE40_RS01180 0.31 -1.1 234,712 - ABIE40_RS01180 0.31 +0.6 234,720 + ABIE40_RS01180 0.33 +0.7 234,720 + ABIE40_RS01180 0.33 +2.1 234,720 + ABIE40_RS01180 0.33 -1.2 234,739 + ABIE40_RS01180 0.38 +1.6 234,739 + ABIE40_RS01180 0.38 +0.2 234,740 - ABIE40_RS01180 0.38 +0.6 234,778 + ABIE40_RS01180 0.48 +0.3 234,778 + ABIE40_RS01180 0.48 +0.4 234,778 + ABIE40_RS01180 0.48 -0.5 234,779 - ABIE40_RS01180 0.48 +0.4 234,779 - ABIE40_RS01180 0.48 +1.2 234,779 - ABIE40_RS01180 0.48 -1.1 234,944 + +0.2 234,945 - -2.0 234,945 - -1.2 234,995 + +0.5 234,995 + -0.7 234,996 - -1.1 234,996 - -0.9 234,996 - +1.5 234,996 - -2.4 235,027 + ABIE40_RS01185 0.14 -0.6 235,027 + ABIE40_RS01185 0.14 -1.0 235,027 + ABIE40_RS01185 0.14 -0.5 235,028 - ABIE40_RS01185 0.14 -1.7 235,105 + ABIE40_RS01185 0.34 -2.7 235,106 - ABIE40_RS01185 0.35 -1.8 235,115 + ABIE40_RS01185 0.37 -0.6 235,116 - ABIE40_RS01185 0.37 -2.6 235,116 - ABIE40_RS01185 0.37 -0.6 235,116 - ABIE40_RS01185 0.37 -0.2 235,138 + ABIE40_RS01185 0.43 +0.1 235,139 - ABIE40_RS01185 0.43 +2.0 235,139 - ABIE40_RS01185 0.43 -1.3 235,166 - ABIE40_RS01185 0.51 +0.5 235,212 + ABIE40_RS01185 0.63 +1.0 235,212 + ABIE40_RS01185 0.63 -3.1 235,212 + ABIE40_RS01185 0.63 +0.8 235,213 - ABIE40_RS01185 0.63 -0.7 235,360 + -1.0 235,360 + +0.4 235,360 + -0.1 235,360 + -0.2 235,361 - +0.8 235,361 - -0.6 235,394 + -1.8 235,394 + +0.4 235,394 + -0.8 235,394 + -1.2 235,394 + -0.9 235,394 + -2.0 235,394 + -0.5 235,395 - -1.0 235,395 - -0.9 235,395 - -0.7 235,395 - -1.2 235,395 - -0.9 235,396 + +0.7 235,410 + -0.1 235,421 + ABIE40_RS01190 0.10 +2.0 235,453 + ABIE40_RS01190 0.15 -0.7 235,453 + ABIE40_RS01190 0.15 +0.3 235,454 - ABIE40_RS01190 0.15 -0.9 235,454 - ABIE40_RS01190 0.15 +0.4 235,454 - ABIE40_RS01190 0.15 -1.3 235,454 - ABIE40_RS01190 0.15 -0.3 235,454 - ABIE40_RS01190 0.15 -3.3 235,455 + ABIE40_RS01190 0.15 -1.7 235,455 + ABIE40_RS01190 0.15 -1.9 235,488 + ABIE40_RS01190 0.20 -1.1 235,489 - ABIE40_RS01190 0.20 -1.7 235,540 + ABIE40_RS01190 0.27 -0.6 235,586 + ABIE40_RS01190 0.34 -1.9 235,586 + ABIE40_RS01190 0.34 -0.2 235,586 + ABIE40_RS01190 0.34 -0.3 235,587 - ABIE40_RS01190 0.34 -1.6 235,587 - ABIE40_RS01190 0.34 -0.1 235,587 - ABIE40_RS01190 0.34 +0.0 235,659 + ABIE40_RS01190 0.44 +2.4 235,659 + ABIE40_RS01190 0.44 -0.0 235,660 - ABIE40_RS01190 0.44 -0.6 235,660 - ABIE40_RS01190 0.44 +1.2 235,660 - ABIE40_RS01190 0.44 -1.0 235,711 + ABIE40_RS01190 0.51 -1.7 235,712 - ABIE40_RS01190 0.51 -0.2 235,884 + ABIE40_RS01190 0.76 +0.5 235,884 + ABIE40_RS01190 0.76 -0.6 235,885 - ABIE40_RS01190 0.76 -0.1 235,953 - ABIE40_RS01190 0.86 -0.1 236,018 + +0.5 236,019 - -0.5 236,019 - -2.2 236,169 + +0.8 236,170 - +1.5 236,170 - +0.6 236,176 + +0.6 236,176 + -1.6 236,176 + -0.0 236,177 - -1.6 236,177 - +1.5
Or see this region's nucleotide sequence