Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30970 and ABIE40_RS30975 are separated by 12 nucleotides ABIE40_RS30975 and ABIE40_RS30980 are separated by 2 nucleotides ABIE40_RS30980 and ABIE40_RS30985 are separated by 66 nucleotides
ABIE40_RS30970: ABIE40_RS30970 - glycosyltransferase, at 890,156 to 891,268
_RS30970
ABIE40_RS30975: ABIE40_RS30975 - UDP-glucuronic acid decarboxylase family protein, at 891,281 to 892,315
_RS30975
ABIE40_RS30980: ABIE40_RS30980 - TIGR04290 family methyltransferase, at 892,318 to 893,073
_RS30980
ABIE40_RS30985: ABIE40_RS30985 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 893,140 to 893,523
_RS30985
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 890.355 kb on - strand, within ABIE40_RS30970 at 890.430 kb on - strand, within ABIE40_RS30970 at 890.496 kb on - strand, within ABIE40_RS30970 at 890.549 kb on + strand, within ABIE40_RS30970 at 890.736 kb on - strand, within ABIE40_RS30970 at 890.944 kb on + strand, within ABIE40_RS30970 at 890.944 kb on + strand, within ABIE40_RS30970 at 890.944 kb on + strand, within ABIE40_RS30970 at 890.945 kb on - strand, within ABIE40_RS30970 at 890.945 kb on - strand, within ABIE40_RS30970 at 890.945 kb on - strand, within ABIE40_RS30970 at 891.521 kb on + strand, within ABIE40_RS30975 at 891.521 kb on + strand, within ABIE40_RS30975 at 891.521 kb on + strand, within ABIE40_RS30975 at 891.522 kb on - strand, within ABIE40_RS30975 at 891.522 kb on - strand, within ABIE40_RS30975 at 891.555 kb on - strand, within ABIE40_RS30975 at 891.555 kb on - strand, within ABIE40_RS30975 at 891.555 kb on - strand, within ABIE40_RS30975 at 891.833 kb on - strand, within ABIE40_RS30975 at 891.836 kb on + strand, within ABIE40_RS30975 at 891.837 kb on - strand, within ABIE40_RS30975 at 891.874 kb on - strand, within ABIE40_RS30975 at 891.920 kb on + strand, within ABIE40_RS30975 at 891.920 kb on + strand, within ABIE40_RS30975 at 891.953 kb on + strand, within ABIE40_RS30975 at 892.314 kb on - strand at 892.346 kb on + strand at 892.395 kb on + strand, within ABIE40_RS30980 at 892.431 kb on - strand, within ABIE40_RS30980 at 892.594 kb on + strand, within ABIE40_RS30980 at 892.594 kb on + strand, within ABIE40_RS30980 at 892.599 kb on - strand, within ABIE40_RS30980 at 892.663 kb on + strand, within ABIE40_RS30980 at 892.721 kb on - strand, within ABIE40_RS30980 at 892.880 kb on - strand, within ABIE40_RS30980 at 893.042 kb on - strand at 893.042 kb on - strand at 893.042 kb on - strand at 893.141 kb on + strand at 893.142 kb on - strand at 893.262 kb on - strand, within ABIE40_RS30985 at 893.262 kb on - strand, within ABIE40_RS30985 at 893.262 kb on - strand, within ABIE40_RS30985 at 893.262 kb on - strand, within ABIE40_RS30985 at 893.299 kb on + strand, within ABIE40_RS30985 at 893.299 kb on + strand, within ABIE40_RS30985 at 893.300 kb on - strand, within ABIE40_RS30985
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 890,355 - ABIE40_RS30970 0.18 +1.1 890,430 - ABIE40_RS30970 0.25 +1.0 890,496 - ABIE40_RS30970 0.31 -0.5 890,549 + ABIE40_RS30970 0.35 +1.3 890,736 - ABIE40_RS30970 0.52 +2.3 890,944 + ABIE40_RS30970 0.71 -0.2 890,944 + ABIE40_RS30970 0.71 -0.5 890,944 + ABIE40_RS30970 0.71 +0.2 890,945 - ABIE40_RS30970 0.71 +0.8 890,945 - ABIE40_RS30970 0.71 +0.7 890,945 - ABIE40_RS30970 0.71 -0.5 891,521 + ABIE40_RS30975 0.23 -1.8 891,521 + ABIE40_RS30975 0.23 -0.1 891,521 + ABIE40_RS30975 0.23 +0.3 891,522 - ABIE40_RS30975 0.23 +0.3 891,522 - ABIE40_RS30975 0.23 -1.4 891,555 - ABIE40_RS30975 0.26 -0.4 891,555 - ABIE40_RS30975 0.26 +2.3 891,555 - ABIE40_RS30975 0.26 -0.0 891,833 - ABIE40_RS30975 0.53 -1.2 891,836 + ABIE40_RS30975 0.54 -1.0 891,837 - ABIE40_RS30975 0.54 -0.3 891,874 - ABIE40_RS30975 0.57 +1.3 891,920 + ABIE40_RS30975 0.62 +0.7 891,920 + ABIE40_RS30975 0.62 -0.6 891,953 + ABIE40_RS30975 0.65 -1.0 892,314 - +0.2 892,346 + +0.2 892,395 + ABIE40_RS30980 0.10 -1.9 892,431 - ABIE40_RS30980 0.15 +1.3 892,594 + ABIE40_RS30980 0.37 -0.5 892,594 + ABIE40_RS30980 0.37 -0.5 892,599 - ABIE40_RS30980 0.37 -1.3 892,663 + ABIE40_RS30980 0.46 +0.7 892,721 - ABIE40_RS30980 0.53 +1.3 892,880 - ABIE40_RS30980 0.74 +2.3 893,042 - -0.0 893,042 - -1.0 893,042 - -0.5 893,141 + -1.3 893,142 - -2.5 893,262 - ABIE40_RS30985 0.32 +0.5 893,262 - ABIE40_RS30985 0.32 -2.1 893,262 - ABIE40_RS30985 0.32 +2.3 893,262 - ABIE40_RS30985 0.32 +1.3 893,299 + ABIE40_RS30985 0.41 +3.3 893,299 + ABIE40_RS30985 0.41 +2.3 893,300 - ABIE40_RS30985 0.42 -1.7
Or see this region's nucleotide sequence