Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30470 and ABIE40_RS30475 are separated by 50 nucleotides ABIE40_RS30475 and ABIE40_RS30480 are separated by 408 nucleotides ABIE40_RS30480 and ABIE40_RS30485 are separated by 210 nucleotides
ABIE40_RS30470: ABIE40_RS30470 - cation:proton antiporter, at 778,591 to 779,865
_RS30470
ABIE40_RS30475: ABIE40_RS30475 - metalloregulator ArsR/SmtB family transcription factor, at 779,916 to 780,221
_RS30475
ABIE40_RS30480: ABIE40_RS30480 - YMGG-like glycine zipper-containing protein, at 780,630 to 780,896
_RS30480
ABIE40_RS30485: ABIE40_RS30485 - DNA polymerase III subunit epsilon, at 781,107 to 781,859
_RS30485
Position (kb) 779
780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 779.246 kb on - strand, within ABIE40_RS30470 at 779.256 kb on + strand, within ABIE40_RS30470 at 779.256 kb on + strand, within ABIE40_RS30470 at 779.356 kb on + strand, within ABIE40_RS30470 at 779.453 kb on + strand, within ABIE40_RS30470 at 779.663 kb on + strand, within ABIE40_RS30470 at 779.674 kb on + strand, within ABIE40_RS30470 at 779.674 kb on + strand, within ABIE40_RS30470 at 779.674 kb on + strand, within ABIE40_RS30470 at 779.675 kb on - strand, within ABIE40_RS30470 at 779.675 kb on - strand, within ABIE40_RS30470 at 779.678 kb on - strand, within ABIE40_RS30470 at 779.687 kb on - strand, within ABIE40_RS30470 at 779.687 kb on - strand, within ABIE40_RS30470 at 779.687 kb on - strand, within ABIE40_RS30470 at 779.687 kb on - strand, within ABIE40_RS30470 at 779.726 kb on + strand, within ABIE40_RS30470 at 779.726 kb on + strand, within ABIE40_RS30470 at 779.726 kb on + strand, within ABIE40_RS30470 at 779.867 kb on + strand at 779.996 kb on - strand, within ABIE40_RS30475 at 780.114 kb on + strand, within ABIE40_RS30475 at 780.142 kb on - strand, within ABIE40_RS30475 at 780.142 kb on - strand, within ABIE40_RS30475 at 780.214 kb on - strand at 780.214 kb on - strand at 780.214 kb on - strand at 780.214 kb on - strand at 780.244 kb on + strand at 780.244 kb on + strand at 780.267 kb on + strand at 780.267 kb on + strand at 780.268 kb on - strand at 780.297 kb on - strand at 780.311 kb on - strand at 780.331 kb on + strand at 780.378 kb on + strand at 780.402 kb on - strand at 780.643 kb on + strand at 780.643 kb on + strand at 780.761 kb on + strand, within ABIE40_RS30480 at 780.761 kb on + strand, within ABIE40_RS30480 at 780.761 kb on + strand, within ABIE40_RS30480 at 780.762 kb on - strand, within ABIE40_RS30480 at 780.762 kb on - strand, within ABIE40_RS30480 at 780.836 kb on + strand, within ABIE40_RS30480 at 780.836 kb on + strand, within ABIE40_RS30480 at 780.837 kb on - strand, within ABIE40_RS30480 at 780.837 kb on - strand, within ABIE40_RS30480 at 780.837 kb on - strand, within ABIE40_RS30480 at 780.837 kb on - strand, within ABIE40_RS30480 at 780.837 kb on - strand, within ABIE40_RS30480 at 780.853 kb on - strand, within ABIE40_RS30480 at 780.853 kb on - strand, within ABIE40_RS30480 at 780.853 kb on - strand, within ABIE40_RS30480 at 780.877 kb on - strand at 780.931 kb on - strand at 780.931 kb on - strand at 780.931 kb on - strand at 781.071 kb on - strand at 781.071 kb on - strand at 781.071 kb on - strand at 781.171 kb on + strand at 781.171 kb on + strand at 781.172 kb on - strand at 781.172 kb on - strand at 781.172 kb on - strand at 781.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 779,246 - ABIE40_RS30470 0.51 +2.3 779,256 + ABIE40_RS30470 0.52 +2.3 779,256 + ABIE40_RS30470 0.52 -0.1 779,356 + ABIE40_RS30470 0.60 +0.1 779,453 + ABIE40_RS30470 0.68 -0.3 779,663 + ABIE40_RS30470 0.84 -1.7 779,674 + ABIE40_RS30470 0.85 -0.3 779,674 + ABIE40_RS30470 0.85 +0.4 779,674 + ABIE40_RS30470 0.85 -0.6 779,675 - ABIE40_RS30470 0.85 -1.5 779,675 - ABIE40_RS30470 0.85 +2.3 779,678 - ABIE40_RS30470 0.85 +0.5 779,687 - ABIE40_RS30470 0.86 +0.0 779,687 - ABIE40_RS30470 0.86 -0.7 779,687 - ABIE40_RS30470 0.86 +0.4 779,687 - ABIE40_RS30470 0.86 -1.6 779,726 + ABIE40_RS30470 0.89 +0.4 779,726 + ABIE40_RS30470 0.89 -0.8 779,726 + ABIE40_RS30470 0.89 -0.8 779,867 + +1.4 779,996 - ABIE40_RS30475 0.26 +0.1 780,114 + ABIE40_RS30475 0.65 -0.0 780,142 - ABIE40_RS30475 0.74 +0.7 780,142 - ABIE40_RS30475 0.74 +0.5 780,214 - -0.5 780,214 - +0.1 780,214 - +1.3 780,214 - +1.3 780,244 + +0.7 780,244 + +1.0 780,267 + +0.5 780,267 + +0.5 780,268 - +2.3 780,297 - +0.7 780,311 - -3.1 780,331 + -1.6 780,378 + -0.5 780,402 - -1.0 780,643 + -0.7 780,643 + -0.5 780,761 + ABIE40_RS30480 0.49 +0.8 780,761 + ABIE40_RS30480 0.49 +0.2 780,761 + ABIE40_RS30480 0.49 +0.5 780,762 - ABIE40_RS30480 0.49 -1.8 780,762 - ABIE40_RS30480 0.49 +0.7 780,836 + ABIE40_RS30480 0.77 -0.1 780,836 + ABIE40_RS30480 0.77 +0.5 780,837 - ABIE40_RS30480 0.78 -2.0 780,837 - ABIE40_RS30480 0.78 +1.0 780,837 - ABIE40_RS30480 0.78 -2.2 780,837 - ABIE40_RS30480 0.78 -0.2 780,837 - ABIE40_RS30480 0.78 -0.5 780,853 - ABIE40_RS30480 0.84 +0.6 780,853 - ABIE40_RS30480 0.84 +0.0 780,853 - ABIE40_RS30480 0.84 -1.0 780,877 - +0.7 780,931 - -0.5 780,931 - -0.6 780,931 - -1.8 781,071 - -1.2 781,071 - -0.3 781,071 - +1.1 781,171 + +0.7 781,171 + +2.3 781,172 - +3.3 781,172 - -1.2 781,172 - +1.3 781,172 - +1.0
Or see this region's nucleotide sequence