Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27140

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27135 and ABIE40_RS27140 are separated by 69 nucleotidesABIE40_RS27140 and ABIE40_RS27145 are separated by 108 nucleotidesABIE40_RS27145 and ABIE40_RS27150 are separated by 61 nucleotides ABIE40_RS27135: ABIE40_RS27135 - CHAD domain-containing protein, at 145,724 to 147,178 _RS27135 ABIE40_RS27140: ABIE40_RS27140 - DUF2934 domain-containing protein, at 147,248 to 147,652 _RS27140 ABIE40_RS27145: ABIE40_RS27145 - hypothetical protein, at 147,761 to 148,021 _RS27145 ABIE40_RS27150: ABIE40_RS27150 - NUDIX hydrolase, at 148,083 to 148,550 _RS27150 Position (kb) 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 146.333 kb on + strand, within ABIE40_RS27135at 146.333 kb on + strand, within ABIE40_RS27135at 146.423 kb on - strand, within ABIE40_RS27135at 146.536 kb on - strand, within ABIE40_RS27135at 146.658 kb on - strand, within ABIE40_RS27135at 146.909 kb on + strand, within ABIE40_RS27135at 146.910 kb on - strand, within ABIE40_RS27135at 146.965 kb on + strand, within ABIE40_RS27135at 146.965 kb on + strand, within ABIE40_RS27135at 146.966 kb on - strand, within ABIE40_RS27135at 147.092 kb on + strandat 147.092 kb on + strandat 147.092 kb on + strandat 147.093 kb on - strandat 147.177 kb on - strandat 147.203 kb on + strandat 147.204 kb on - strandat 147.204 kb on - strandat 147.338 kb on - strand, within ABIE40_RS27140at 147.440 kb on - strand, within ABIE40_RS27140at 147.442 kb on - strand, within ABIE40_RS27140at 147.505 kb on + strand, within ABIE40_RS27140at 147.505 kb on + strand, within ABIE40_RS27140at 147.505 kb on + strand, within ABIE40_RS27140at 147.505 kb on + strand, within ABIE40_RS27140at 147.505 kb on + strand, within ABIE40_RS27140at 147.506 kb on - strand, within ABIE40_RS27140at 147.506 kb on - strand, within ABIE40_RS27140at 147.506 kb on - strand, within ABIE40_RS27140at 147.506 kb on - strand, within ABIE40_RS27140at 147.506 kb on - strand, within ABIE40_RS27140at 147.593 kb on - strand, within ABIE40_RS27140at 147.593 kb on - strand, within ABIE40_RS27140at 147.602 kb on + strand, within ABIE40_RS27140at 147.706 kb on + strandat 147.707 kb on - strandat 147.707 kb on - strandat 147.734 kb on - strandat 147.790 kb on + strand, within ABIE40_RS27145at 147.790 kb on + strand, within ABIE40_RS27145at 147.790 kb on + strand, within ABIE40_RS27145at 147.790 kb on + strand, within ABIE40_RS27145at 147.791 kb on - strand, within ABIE40_RS27145at 147.791 kb on - strand, within ABIE40_RS27145at 147.911 kb on + strand, within ABIE40_RS27145at 147.911 kb on + strand, within ABIE40_RS27145at 147.912 kb on - strand, within ABIE40_RS27145at 147.960 kb on + strand, within ABIE40_RS27145at 147.986 kb on - strand, within ABIE40_RS27145at 148.093 kb on + strandat 148.094 kb on - strandat 148.094 kb on - strandat 148.097 kb on + strandat 148.097 kb on + strandat 148.097 kb on + strandat 148.097 kb on + strandat 148.098 kb on - strandat 148.098 kb on - strandat 148.098 kb on - strandat 148.141 kb on + strand, within ABIE40_RS27150at 148.141 kb on + strand, within ABIE40_RS27150at 148.141 kb on + strand, within ABIE40_RS27150at 148.141 kb on + strand, within ABIE40_RS27150at 148.142 kb on - strand, within ABIE40_RS27150at 148.185 kb on - strand, within ABIE40_RS27150at 148.329 kb on + strand, within ABIE40_RS27150at 148.353 kb on - strand, within ABIE40_RS27150at 148.380 kb on + strand, within ABIE40_RS27150at 148.380 kb on + strand, within ABIE40_RS27150at 148.380 kb on + strand, within ABIE40_RS27150at 148.381 kb on - strand, within ABIE40_RS27150at 148.381 kb on - strand, within ABIE40_RS27150at 148.386 kb on - strand, within ABIE40_RS27150at 148.441 kb on + strand, within ABIE40_RS27150at 148.441 kb on + strand, within ABIE40_RS27150at 148.442 kb on - strand, within ABIE40_RS27150at 148.481 kb on - strand, within ABIE40_RS27150at 148.556 kb on + strandat 148.556 kb on + strandat 148.557 kb on - strandat 148.561 kb on - strandat 148.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
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146,333 + ABIE40_RS27135 0.42 -1.8
146,333 + ABIE40_RS27135 0.42 -0.6
146,423 - ABIE40_RS27135 0.48 -1.8
146,536 - ABIE40_RS27135 0.56 -1.4
146,658 - ABIE40_RS27135 0.64 -0.7
146,909 + ABIE40_RS27135 0.81 -1.4
146,910 - ABIE40_RS27135 0.82 -0.8
146,965 + ABIE40_RS27135 0.85 -0.9
146,965 + ABIE40_RS27135 0.85 -0.7
146,966 - ABIE40_RS27135 0.85 -1.6
147,092 + -1.1
147,092 + -0.3
147,092 + -0.3
147,093 - -0.6
147,177 - -1.5
147,203 + -0.8
147,204 - +0.0
147,204 - -0.2
147,338 - ABIE40_RS27140 0.22 +2.3
147,440 - ABIE40_RS27140 0.47 -0.6
147,442 - ABIE40_RS27140 0.48 +0.7
147,505 + ABIE40_RS27140 0.63 +0.0
147,505 + ABIE40_RS27140 0.63 +1.7
147,505 + ABIE40_RS27140 0.63 +0.6
147,505 + ABIE40_RS27140 0.63 +0.5
147,505 + ABIE40_RS27140 0.63 -0.1
147,506 - ABIE40_RS27140 0.64 +1.3
147,506 - ABIE40_RS27140 0.64 -2.1
147,506 - ABIE40_RS27140 0.64 +1.6
147,506 - ABIE40_RS27140 0.64 -0.6
147,506 - ABIE40_RS27140 0.64 -2.1
147,593 - ABIE40_RS27140 0.85 -0.7
147,593 - ABIE40_RS27140 0.85 +0.6
147,602 + ABIE40_RS27140 0.87 -0.9
147,706 + -0.1
147,707 - +1.3
147,707 - +0.0
147,734 - +2.3
147,790 + ABIE40_RS27145 0.11 +0.1
147,790 + ABIE40_RS27145 0.11 +0.0
147,790 + ABIE40_RS27145 0.11 -1.1
147,790 + ABIE40_RS27145 0.11 +0.3
147,791 - ABIE40_RS27145 0.11 -1.5
147,791 - ABIE40_RS27145 0.11 +0.7
147,911 + ABIE40_RS27145 0.57 +0.5
147,911 + ABIE40_RS27145 0.57 -1.2
147,912 - ABIE40_RS27145 0.58 +0.7
147,960 + ABIE40_RS27145 0.76 +1.3
147,986 - ABIE40_RS27145 0.86 -0.8
148,093 + +0.6
148,094 - +2.3
148,094 - -1.3
148,097 + -0.1
148,097 + -0.5
148,097 + +0.5
148,097 + -0.3
148,098 - -0.2
148,098 - +2.0
148,098 - +1.3
148,141 + ABIE40_RS27150 0.12 -0.3
148,141 + ABIE40_RS27150 0.12 +0.7
148,141 + ABIE40_RS27150 0.12 +0.3
148,141 + ABIE40_RS27150 0.12 -1.7
148,142 - ABIE40_RS27150 0.13 -0.3
148,185 - ABIE40_RS27150 0.22 -1.1
148,329 + ABIE40_RS27150 0.53 -1.8
148,353 - ABIE40_RS27150 0.58 +2.3
148,380 + ABIE40_RS27150 0.63 +1.0
148,380 + ABIE40_RS27150 0.63 +0.7
148,380 + ABIE40_RS27150 0.63 +0.7
148,381 - ABIE40_RS27150 0.64 +0.8
148,381 - ABIE40_RS27150 0.64 +1.1
148,386 - ABIE40_RS27150 0.65 -1.1
148,441 + ABIE40_RS27150 0.76 -0.9
148,441 + ABIE40_RS27150 0.76 +2.3
148,442 - ABIE40_RS27150 0.77 -0.1
148,481 - ABIE40_RS27150 0.85 +2.3
148,556 + +0.6
148,556 + +1.7
148,557 - +0.4
148,561 - +0.7
148,561 - +2.3

Or see this region's nucleotide sequence