Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04960 and ABIE40_RS04965 are separated by 0 nucleotides ABIE40_RS04965 and ABIE40_RS04970 are separated by 127 nucleotides ABIE40_RS04970 and ABIE40_RS04975 overlap by 4 nucleotides ABIE40_RS04975 and ABIE40_RS04980 are separated by 4 nucleotides
ABIE40_RS04960: ABIE40_RS04960 - hemolysin III family protein, at 972,064 to 972,726
_RS04960
ABIE40_RS04965: ABIE40_RS04965 - hypothetical protein, at 972,727 to 973,203
_RS04965
ABIE40_RS04970: ABIE40_RS04970 - GNAT family N-acetyltransferase, at 973,331 to 973,837
_RS04970
ABIE40_RS04975: ABIE40_RS04975 - AAA family ATPase, at 973,834 to 974,343
_RS04975
ABIE40_RS04980: ABIE40_RS04980 - peptide-methionine (R)-S-oxide reductase MsrB, at 974,348 to 974,758
_RS04980
Position (kb) 973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 972.355 kb on + strand, within ABIE40_RS04960 at 972.355 kb on + strand, within ABIE40_RS04960 at 972.355 kb on + strand, within ABIE40_RS04960 at 972.355 kb on + strand, within ABIE40_RS04960 at 972.355 kb on + strand, within ABIE40_RS04960 at 972.356 kb on - strand, within ABIE40_RS04960 at 972.356 kb on - strand, within ABIE40_RS04960 at 972.356 kb on - strand, within ABIE40_RS04960 at 972.356 kb on - strand, within ABIE40_RS04960 at 972.356 kb on - strand, within ABIE40_RS04960 at 972.356 kb on - strand, within ABIE40_RS04960 at 972.469 kb on + strand, within ABIE40_RS04960 at 972.469 kb on + strand, within ABIE40_RS04960 at 972.470 kb on - strand, within ABIE40_RS04960 at 972.470 kb on - strand, within ABIE40_RS04960 at 972.470 kb on - strand, within ABIE40_RS04960 at 972.493 kb on + strand, within ABIE40_RS04960 at 972.493 kb on + strand, within ABIE40_RS04960 at 972.493 kb on + strand, within ABIE40_RS04960 at 972.493 kb on + strand, within ABIE40_RS04960 at 972.494 kb on - strand, within ABIE40_RS04960 at 972.592 kb on + strand, within ABIE40_RS04960 at 972.592 kb on + strand, within ABIE40_RS04960 at 972.592 kb on + strand, within ABIE40_RS04960 at 972.592 kb on + strand, within ABIE40_RS04960 at 972.593 kb on - strand, within ABIE40_RS04960 at 972.724 kb on + strand at 972.785 kb on + strand, within ABIE40_RS04965 at 972.785 kb on + strand, within ABIE40_RS04965 at 972.786 kb on - strand, within ABIE40_RS04965 at 972.786 kb on - strand, within ABIE40_RS04965 at 972.786 kb on - strand, within ABIE40_RS04965 at 972.809 kb on + strand, within ABIE40_RS04965 at 972.809 kb on + strand, within ABIE40_RS04965 at 972.825 kb on - strand, within ABIE40_RS04965 at 972.863 kb on + strand, within ABIE40_RS04965 at 972.863 kb on + strand, within ABIE40_RS04965 at 972.864 kb on - strand, within ABIE40_RS04965 at 972.864 kb on - strand, within ABIE40_RS04965 at 972.864 kb on - strand, within ABIE40_RS04965 at 972.864 kb on - strand, within ABIE40_RS04965 at 972.864 kb on - strand, within ABIE40_RS04965 at 972.924 kb on - strand, within ABIE40_RS04965 at 972.973 kb on - strand, within ABIE40_RS04965 at 972.974 kb on + strand, within ABIE40_RS04965 at 972.975 kb on - strand, within ABIE40_RS04965 at 973.112 kb on + strand, within ABIE40_RS04965 at 973.113 kb on - strand, within ABIE40_RS04965 at 973.113 kb on - strand, within ABIE40_RS04965 at 973.113 kb on - strand, within ABIE40_RS04965 at 973.133 kb on + strand, within ABIE40_RS04965 at 973.134 kb on - strand, within ABIE40_RS04965 at 973.232 kb on - strand at 973.273 kb on + strand at 973.274 kb on - strand at 973.295 kb on - strand at 973.305 kb on + strand at 973.306 kb on - strand at 973.307 kb on + strand at 973.307 kb on + strand at 973.307 kb on + strand at 973.307 kb on + strand at 973.307 kb on + strand at 973.307 kb on + strand at 973.307 kb on + strand at 973.308 kb on - strand at 973.308 kb on - strand at 973.308 kb on - strand at 973.394 kb on + strand, within ABIE40_RS04970 at 973.394 kb on + strand, within ABIE40_RS04970 at 973.394 kb on + strand, within ABIE40_RS04970 at 973.394 kb on + strand, within ABIE40_RS04970 at 973.395 kb on - strand, within ABIE40_RS04970 at 973.395 kb on - strand, within ABIE40_RS04970 at 973.395 kb on - strand, within ABIE40_RS04970 at 973.395 kb on - strand, within ABIE40_RS04970 at 973.395 kb on - strand, within ABIE40_RS04970 at 973.395 kb on - strand, within ABIE40_RS04970 at 973.535 kb on + strand, within ABIE40_RS04970 at 973.545 kb on - strand, within ABIE40_RS04970 at 973.593 kb on + strand, within ABIE40_RS04970 at 973.598 kb on + strand, within ABIE40_RS04970 at 973.599 kb on - strand, within ABIE40_RS04970 at 973.599 kb on - strand, within ABIE40_RS04970 at 973.599 kb on - strand, within ABIE40_RS04970 at 973.612 kb on + strand, within ABIE40_RS04970 at 974.280 kb on + strand, within ABIE40_RS04975 at 974.280 kb on + strand, within ABIE40_RS04975 at 974.281 kb on - strand, within ABIE40_RS04975 at 974.349 kb on + strand at 974.349 kb on + strand at 974.349 kb on + strand at 974.350 kb on - strand at 974.350 kb on - strand at 974.350 kb on - strand at 974.350 kb on - strand at 974.391 kb on + strand, within ABIE40_RS04980 at 974.391 kb on + strand, within ABIE40_RS04980 at 974.392 kb on - strand, within ABIE40_RS04980 at 974.392 kb on - strand, within ABIE40_RS04980 at 974.484 kb on + strand, within ABIE40_RS04980 at 974.484 kb on + strand, within ABIE40_RS04980 at 974.484 kb on + strand, within ABIE40_RS04980 at 974.484 kb on + strand, within ABIE40_RS04980 at 974.484 kb on + strand, within ABIE40_RS04980 at 974.484 kb on + strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.485 kb on - strand, within ABIE40_RS04980 at 974.535 kb on + strand, within ABIE40_RS04980 at 974.536 kb on - strand, within ABIE40_RS04980 at 974.610 kb on + strand, within ABIE40_RS04980 at 974.610 kb on + strand, within ABIE40_RS04980 at 974.611 kb on - strand, within ABIE40_RS04980 at 974.611 kb on - strand, within ABIE40_RS04980 at 974.629 kb on + strand, within ABIE40_RS04980 at 974.630 kb on - strand, within ABIE40_RS04980 at 974.637 kb on + strand, within ABIE40_RS04980 at 974.638 kb on - strand, within ABIE40_RS04980 at 974.638 kb on - strand, within ABIE40_RS04980
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 972,355 + ABIE40_RS04960 0.44 -2.0 972,355 + ABIE40_RS04960 0.44 +3.2 972,355 + ABIE40_RS04960 0.44 -0.1 972,355 + ABIE40_RS04960 0.44 +0.7 972,355 + ABIE40_RS04960 0.44 -0.2 972,356 - ABIE40_RS04960 0.44 -0.9 972,356 - ABIE40_RS04960 0.44 +0.0 972,356 - ABIE40_RS04960 0.44 +0.5 972,356 - ABIE40_RS04960 0.44 -1.8 972,356 - ABIE40_RS04960 0.44 +0.9 972,356 - ABIE40_RS04960 0.44 -0.2 972,469 + ABIE40_RS04960 0.61 +0.6 972,469 + ABIE40_RS04960 0.61 +1.9 972,470 - ABIE40_RS04960 0.61 -0.8 972,470 - ABIE40_RS04960 0.61 +0.8 972,470 - ABIE40_RS04960 0.61 +0.4 972,493 + ABIE40_RS04960 0.65 -0.3 972,493 + ABIE40_RS04960 0.65 -2.8 972,493 + ABIE40_RS04960 0.65 -0.7 972,493 + ABIE40_RS04960 0.65 +1.9 972,494 - ABIE40_RS04960 0.65 -2.1 972,592 + ABIE40_RS04960 0.80 -1.2 972,592 + ABIE40_RS04960 0.80 +0.5 972,592 + ABIE40_RS04960 0.80 -0.3 972,592 + ABIE40_RS04960 0.80 -2.3 972,593 - ABIE40_RS04960 0.80 +0.2 972,724 + -0.7 972,785 + ABIE40_RS04965 0.12 -0.1 972,785 + ABIE40_RS04965 0.12 -0.5 972,786 - ABIE40_RS04965 0.12 +1.2 972,786 - ABIE40_RS04965 0.12 -1.0 972,786 - ABIE40_RS04965 0.12 +0.3 972,809 + ABIE40_RS04965 0.17 +0.4 972,809 + ABIE40_RS04965 0.17 -0.7 972,825 - ABIE40_RS04965 0.21 -1.1 972,863 + ABIE40_RS04965 0.29 -0.8 972,863 + ABIE40_RS04965 0.29 -0.1 972,864 - ABIE40_RS04965 0.29 -0.1 972,864 - ABIE40_RS04965 0.29 +0.2 972,864 - ABIE40_RS04965 0.29 -0.5 972,864 - ABIE40_RS04965 0.29 +0.3 972,864 - ABIE40_RS04965 0.29 -0.1 972,924 - ABIE40_RS04965 0.41 -0.2 972,973 - ABIE40_RS04965 0.52 -0.9 972,974 + ABIE40_RS04965 0.52 -2.3 972,975 - ABIE40_RS04965 0.52 -0.4 973,112 + ABIE40_RS04965 0.81 +0.9 973,113 - ABIE40_RS04965 0.81 -0.9 973,113 - ABIE40_RS04965 0.81 -0.3 973,113 - ABIE40_RS04965 0.81 +0.5 973,133 + ABIE40_RS04965 0.85 +0.1 973,134 - ABIE40_RS04965 0.85 -1.7 973,232 - -1.1 973,273 + -0.2 973,274 - +1.2 973,295 - +1.9 973,305 + -1.1 973,306 - +0.5 973,307 + +0.0 973,307 + -0.8 973,307 + -0.2 973,307 + +0.3 973,307 + -2.6 973,307 + +0.2 973,307 + +0.3 973,308 - -0.8 973,308 - -0.9 973,308 - -0.7 973,394 + ABIE40_RS04970 0.12 -1.4 973,394 + ABIE40_RS04970 0.12 +0.6 973,394 + ABIE40_RS04970 0.12 -0.1 973,394 + ABIE40_RS04970 0.12 +1.4 973,395 - ABIE40_RS04970 0.13 +1.3 973,395 - ABIE40_RS04970 0.13 +2.6 973,395 - ABIE40_RS04970 0.13 +0.6 973,395 - ABIE40_RS04970 0.13 +1.3 973,395 - ABIE40_RS04970 0.13 +0.9 973,395 - ABIE40_RS04970 0.13 -0.1 973,535 + ABIE40_RS04970 0.40 +0.3 973,545 - ABIE40_RS04970 0.42 +0.9 973,593 + ABIE40_RS04970 0.52 -0.5 973,598 + ABIE40_RS04970 0.53 -0.3 973,599 - ABIE40_RS04970 0.53 -2.6 973,599 - ABIE40_RS04970 0.53 +1.6 973,599 - ABIE40_RS04970 0.53 -0.7 973,612 + ABIE40_RS04970 0.55 -1.1 974,280 + ABIE40_RS04975 0.87 +0.3 974,280 + ABIE40_RS04975 0.87 +1.0 974,281 - ABIE40_RS04975 0.88 -0.9 974,349 + -1.5 974,349 + -0.5 974,349 + +1.1 974,350 - -1.2 974,350 - +0.7 974,350 - -0.7 974,350 - +0.5 974,391 + ABIE40_RS04980 0.10 +0.3 974,391 + ABIE40_RS04980 0.10 +2.5 974,392 - ABIE40_RS04980 0.11 +1.0 974,392 - ABIE40_RS04980 0.11 -0.3 974,484 + ABIE40_RS04980 0.33 +1.1 974,484 + ABIE40_RS04980 0.33 -0.2 974,484 + ABIE40_RS04980 0.33 +0.3 974,484 + ABIE40_RS04980 0.33 -0.4 974,484 + ABIE40_RS04980 0.33 -1.1 974,484 + ABIE40_RS04980 0.33 -0.8 974,485 - ABIE40_RS04980 0.33 +0.9 974,485 - ABIE40_RS04980 0.33 +0.6 974,485 - ABIE40_RS04980 0.33 -0.1 974,485 - ABIE40_RS04980 0.33 +0.3 974,485 - ABIE40_RS04980 0.33 -0.5 974,485 - ABIE40_RS04980 0.33 +0.7 974,485 - ABIE40_RS04980 0.33 +0.5 974,485 - ABIE40_RS04980 0.33 -0.6 974,485 - ABIE40_RS04980 0.33 +0.9 974,485 - ABIE40_RS04980 0.33 +1.3 974,535 + ABIE40_RS04980 0.45 -1.3 974,536 - ABIE40_RS04980 0.46 +0.1 974,610 + ABIE40_RS04980 0.64 +1.0 974,610 + ABIE40_RS04980 0.64 +1.6 974,611 - ABIE40_RS04980 0.64 -0.4 974,611 - ABIE40_RS04980 0.64 -0.2 974,629 + ABIE40_RS04980 0.68 -0.9 974,630 - ABIE40_RS04980 0.69 -1.5 974,637 + ABIE40_RS04980 0.70 +0.2 974,638 - ABIE40_RS04980 0.71 -1.5 974,638 - ABIE40_RS04980 0.71 -1.4
Or see this region's nucleotide sequence