Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30860

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS30855 and ABIE40_RS30860 are separated by 225 nucleotidesABIE40_RS30860 and ABIE40_RS30865 are separated by 772 nucleotidesABIE40_RS30865 and ABIE40_RS30870 overlap by 37 nucleotides ABIE40_RS30855: ABIE40_RS30855 - DEAD/DEAH box helicase, at 862,700 to 865,693 _RS30855 ABIE40_RS30860: ABIE40_RS30860 - SDR family oxidoreductase, at 865,919 to 866,788 _RS30860 ABIE40_RS30865: ABIE40_RS30865 - CheR family methyltransferase, at 867,561 to 867,689 _RS30865 ABIE40_RS30870: ABIE40_RS30870 - hypothetical protein, at 867,653 to 868,021 _RS30870 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 864.938 kb on - strand, within ABIE40_RS30855at 864.946 kb on + strand, within ABIE40_RS30855at 865.031 kb on + strand, within ABIE40_RS30855at 865.083 kb on + strand, within ABIE40_RS30855at 865.083 kb on + strand, within ABIE40_RS30855at 865.083 kb on + strand, within ABIE40_RS30855at 865.084 kb on - strand, within ABIE40_RS30855at 865.084 kb on - strand, within ABIE40_RS30855at 865.087 kb on + strand, within ABIE40_RS30855at 865.088 kb on - strand, within ABIE40_RS30855at 865.088 kb on - strand, within ABIE40_RS30855at 865.088 kb on - strand, within ABIE40_RS30855at 865.217 kb on + strand, within ABIE40_RS30855at 865.325 kb on + strand, within ABIE40_RS30855at 865.449 kb on + strandat 865.450 kb on - strandat 865.451 kb on + strandat 865.585 kb on + strandat 865.585 kb on + strandat 865.585 kb on + strandat 865.692 kb on - strandat 865.807 kb on + strandat 865.857 kb on + strandat 865.857 kb on + strandat 865.968 kb on + strandat 865.969 kb on - strandat 865.969 kb on - strandat 865.969 kb on - strandat 865.994 kb on + strandat 865.994 kb on + strandat 865.995 kb on - strandat 865.995 kb on - strandat 865.995 kb on - strandat 865.995 kb on - strandat 865.998 kb on + strandat 865.999 kb on - strandat 866.205 kb on + strand, within ABIE40_RS30860at 866.317 kb on - strand, within ABIE40_RS30860at 866.320 kb on + strand, within ABIE40_RS30860at 866.321 kb on - strand, within ABIE40_RS30860at 866.321 kb on - strand, within ABIE40_RS30860at 866.321 kb on - strand, within ABIE40_RS30860at 866.368 kb on + strand, within ABIE40_RS30860at 866.369 kb on - strand, within ABIE40_RS30860at 866.376 kb on + strand, within ABIE40_RS30860at 866.376 kb on + strand, within ABIE40_RS30860at 866.376 kb on + strand, within ABIE40_RS30860at 866.376 kb on + strand, within ABIE40_RS30860at 866.376 kb on + strand, within ABIE40_RS30860at 866.376 kb on + strand, within ABIE40_RS30860at 866.377 kb on - strand, within ABIE40_RS30860at 866.377 kb on - strand, within ABIE40_RS30860at 866.377 kb on - strand, within ABIE40_RS30860at 866.377 kb on - strand, within ABIE40_RS30860at 866.377 kb on - strand, within ABIE40_RS30860at 866.473 kb on + strand, within ABIE40_RS30860at 866.563 kb on - strand, within ABIE40_RS30860at 866.618 kb on + strand, within ABIE40_RS30860at 866.618 kb on + strand, within ABIE40_RS30860at 866.619 kb on - strand, within ABIE40_RS30860at 866.679 kb on + strand, within ABIE40_RS30860at 866.754 kb on + strandat 866.774 kb on + strandat 866.774 kb on + strandat 866.775 kb on - strandat 866.775 kb on - strandat 866.775 kb on - strandat 866.775 kb on - strandat 866.802 kb on - strandat 866.802 kb on - strandat 866.893 kb on - strandat 866.893 kb on - strandat 866.991 kb on + strandat 866.992 kb on - strandat 866.992 kb on - strandat 867.064 kb on + strandat 867.065 kb on - strandat 867.178 kb on + strandat 867.267 kb on + strandat 867.267 kb on + strandat 867.364 kb on - strandat 867.391 kb on - strandat 867.525 kb on + strandat 867.526 kb on - strandat 867.574 kb on + strand, within ABIE40_RS30865at 867.574 kb on + strand, within ABIE40_RS30865at 867.600 kb on - strand, within ABIE40_RS30865at 867.699 kb on - strand, within ABIE40_RS30870

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
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864,938 - ABIE40_RS30855 0.75 -1.4
864,946 + ABIE40_RS30855 0.75 +0.3
865,031 + ABIE40_RS30855 0.78 -1.9
865,083 + ABIE40_RS30855 0.80 -0.4
865,083 + ABIE40_RS30855 0.80 +0.5
865,083 + ABIE40_RS30855 0.80 -0.6
865,084 - ABIE40_RS30855 0.80 +0.4
865,084 - ABIE40_RS30855 0.80 +0.0
865,087 + ABIE40_RS30855 0.80 -0.6
865,088 - ABIE40_RS30855 0.80 -1.0
865,088 - ABIE40_RS30855 0.80 +0.9
865,088 - ABIE40_RS30855 0.80 -2.5
865,217 + ABIE40_RS30855 0.84 -1.3
865,325 + ABIE40_RS30855 0.88 -0.4
865,449 + +0.4
865,450 - +0.6
865,451 + +1.4
865,585 + +0.8
865,585 + -0.2
865,585 + -1.1
865,692 - +2.4
865,807 + +1.0
865,857 + -1.8
865,857 + -0.4
865,968 + -1.9
865,969 - +0.2
865,969 - +1.1
865,969 - +0.2
865,994 + +0.2
865,994 + +0.8
865,995 - +0.5
865,995 - -1.2
865,995 - +1.7
865,995 - -0.4
865,998 + +2.4
865,999 - +0.8
866,205 + ABIE40_RS30860 0.33 +0.1
866,317 - ABIE40_RS30860 0.46 -0.6
866,320 + ABIE40_RS30860 0.46 +1.4
866,321 - ABIE40_RS30860 0.46 -0.5
866,321 - ABIE40_RS30860 0.46 +0.0
866,321 - ABIE40_RS30860 0.46 -1.7
866,368 + ABIE40_RS30860 0.52 -0.1
866,369 - ABIE40_RS30860 0.52 -1.6
866,376 + ABIE40_RS30860 0.53 -0.8
866,376 + ABIE40_RS30860 0.53 +0.0
866,376 + ABIE40_RS30860 0.53 +0.5
866,376 + ABIE40_RS30860 0.53 -2.0
866,376 + ABIE40_RS30860 0.53 -0.5
866,376 + ABIE40_RS30860 0.53 -0.2
866,377 - ABIE40_RS30860 0.53 -0.2
866,377 - ABIE40_RS30860 0.53 -0.7
866,377 - ABIE40_RS30860 0.53 -1.7
866,377 - ABIE40_RS30860 0.53 +1.2
866,377 - ABIE40_RS30860 0.53 -0.2
866,473 + ABIE40_RS30860 0.64 -1.7
866,563 - ABIE40_RS30860 0.74 +1.4
866,618 + ABIE40_RS30860 0.80 +0.8
866,618 + ABIE40_RS30860 0.80 -1.6
866,619 - ABIE40_RS30860 0.80 -2.5
866,679 + ABIE40_RS30860 0.87 -2.4
866,754 + -0.5
866,774 + +2.4
866,774 + -2.1
866,775 - -0.8
866,775 - -1.1
866,775 - -1.0
866,775 - -0.4
866,802 - -1.5
866,802 - +2.4
866,893 - -1.0
866,893 - -1.2
866,991 + +0.8
866,992 - -1.1
866,992 - -1.8
867,064 + -2.3
867,065 - -2.1
867,178 + +2.7
867,267 + +0.9
867,267 + +2.4
867,364 - -0.4
867,391 - +1.0
867,525 + +2.4
867,526 - +0.6
867,574 + ABIE40_RS30865 0.10 +1.4
867,574 + ABIE40_RS30865 0.10 -1.2
867,600 - ABIE40_RS30865 0.30 +1.8
867,699 - ABIE40_RS30870 0.12 -0.5

Or see this region's nucleotide sequence