Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS12270

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
2,388,354	+		ABIE40_RS12260	0.74	-0.7
2,388,355	-		ABIE40_RS12260	0.74	-0.5
2,388,383	+		ABIE40_RS12260	0.77	+1.7
2,388,606	-				-0.1
2,388,615	+				-0.4
2,388,615	+				-1.8
2,388,616	-				+0.3
2,388,678	+				+0.5
2,388,679	-				-0.8
2,388,679	-				-0.2
2,388,679	-				+2.1
2,388,679	-				+0.1
2,388,679	-				-1.1
2,388,680	+				-1.3
2,388,680	+				-0.2
2,388,681	-				-1.3
2,388,759	-		ABIE40_RS12265	0.11	+0.3
2,388,768	-		ABIE40_RS12265	0.13	-1.0
2,388,768	-		ABIE40_RS12265	0.13	+0.4
2,388,853	-		ABIE40_RS12265	0.32	-1.0
2,388,902	+		ABIE40_RS12265	0.43	+0.5
2,388,902	+		ABIE40_RS12265	0.43	-2.3
2,388,902	+		ABIE40_RS12265	0.43	-3.2
2,388,902	+		ABIE40_RS12265	0.43	-0.8
2,388,902	+		ABIE40_RS12265	0.43	-1.4
2,388,903	-		ABIE40_RS12265	0.43	-0.5
2,388,903	-		ABIE40_RS12265	0.43	-1.3
2,388,903	-		ABIE40_RS12265	0.43	+0.0
2,388,903	-		ABIE40_RS12265	0.43	-1.3
2,388,903	-		ABIE40_RS12265	0.43	-0.1
2,388,998	+		ABIE40_RS12265	0.64	+0.5
2,388,999	-		ABIE40_RS12265	0.64	-1.1
2,388,999	-		ABIE40_RS12265	0.64	+2.3
2,388,999	-		ABIE40_RS12265	0.64	+2.1
2,389,058	+		ABIE40_RS12265	0.77	+0.3
2,389,059	-		ABIE40_RS12265	0.78	+0.8
2,389,059	-		ABIE40_RS12265	0.78	-0.5
2,389,059	-		ABIE40_RS12265	0.78	-0.7
2,389,059	-		ABIE40_RS12265	0.78	+0.1
2,389,059	-		ABIE40_RS12265	0.78	-2.0
2,389,065	+		ABIE40_RS12265	0.79	+0.0
2,389,170	+				+0.6
2,389,171	-				+0.5
2,389,171	-				+0.4
2,389,187	+				-1.1
2,389,188	-				-1.1
2,389,188	-				+1.1
2,389,188	-				-0.5
2,389,193	+				+0.6
2,389,193	+				+1.8
2,389,193	+				+0.9
2,389,193	+				-0.3
2,389,193	+				+0.6
2,389,194	-				-1.1
2,389,194	-				-0.7
2,389,194	-				+0.1
2,389,194	-				-0.9
2,389,194	-				-0.7
2,389,194	-				+0.5
2,389,194	-				-2.4
2,389,194	-				+0.5
2,389,372	+		ABIE40_RS12270	0.20	+0.1
2,389,385	+		ABIE40_RS12270	0.21	-0.1
2,389,386	-		ABIE40_RS12270	0.21	-0.1
2,389,478	+		ABIE40_RS12270	0.29	-0.5
2,389,478	+		ABIE40_RS12270	0.29	+0.4
2,389,597	+		ABIE40_RS12270	0.40	+0.9
2,389,597	+		ABIE40_RS12270	0.40	+0.3
2,389,669	+		ABIE40_RS12270	0.47	+0.1
2,389,669	+		ABIE40_RS12270	0.47	+1.1
2,389,670	-		ABIE40_RS12270	0.47	-1.2
2,389,670	-		ABIE40_RS12270	0.47	-1.0
2,389,670	-		ABIE40_RS12270	0.47	+0.5
2,389,670	-		ABIE40_RS12270	0.47	+2.5
2,389,675	+		ABIE40_RS12270	0.48	+0.8
2,389,676	-		ABIE40_RS12270	0.48	+0.1
2,389,728	+		ABIE40_RS12270	0.52	+0.5
2,389,728	+		ABIE40_RS12270	0.52	+0.8
2,389,728	+		ABIE40_RS12270	0.52	-2.1
2,389,728	+		ABIE40_RS12270	0.52	-1.2
2,389,728	+		ABIE40_RS12270	0.52	-0.9
2,389,729	-		ABIE40_RS12270	0.52	+1.1
2,389,729	-		ABIE40_RS12270	0.52	-0.1
2,389,729	-		ABIE40_RS12270	0.52	-0.1
2,389,767	-		ABIE40_RS12270	0.56	-0.5
2,389,767	-		ABIE40_RS12270	0.56	+0.7
2,389,993	+		ABIE40_RS12270	0.77	-0.1
2,390,071	+		ABIE40_RS12270	0.84	+0.5
2,390,116	-		ABIE40_RS12270	0.88	-0.3
2,390,123	-		ABIE40_RS12270	0.89	-3.0
2,390,130	+		ABIE40_RS12270	0.89	-0.1
2,390,131	-		ABIE40_RS12270	0.89	-0.7
2,390,131	-		ABIE40_RS12270	0.89	+0.0
2,390,213	+				-0.1
2,390,213	+				-1.5
2,390,213	+				+0.1
2,390,214	-				+0.8
2,390,301	+				-0.3
2,390,302	-				+0.8
2,390,302	-				+2.9
2,390,310	+				+1.0
2,390,311	-				-1.2
2,390,325	+				+0.7
2,390,344	+		ABIE40_RS12275	0.10	-0.8
2,390,411	+		ABIE40_RS12275	0.17	+1.5
2,390,528	+		ABIE40_RS12275	0.28	+2.3
2,390,528	+		ABIE40_RS12275	0.28	+0.5
2,390,528	+		ABIE40_RS12275	0.28	-0.3
2,390,532	+		ABIE40_RS12275	0.28	-0.1
2,390,532	+		ABIE40_RS12275	0.28	-0.3
2,390,532	+		ABIE40_RS12275	0.28	+0.4
2,390,532	+		ABIE40_RS12275	0.28	-3.0
2,390,533	-		ABIE40_RS12275	0.29	-0.1
2,390,533	-		ABIE40_RS12275	0.29	-0.5
2,390,533	-		ABIE40_RS12275	0.29	-0.2
2,390,533	-		ABIE40_RS12275	0.29	+0.7
2,390,533	-		ABIE40_RS12275	0.29	+0.9
2,390,533	-		ABIE40_RS12275	0.29	-1.4
2,390,564	+		ABIE40_RS12275	0.32	+0.4
2,390,565	-		ABIE40_RS12275	0.32	-0.3
2,390,565	-		ABIE40_RS12275	0.32	+0.3
2,390,565	-		ABIE40_RS12275	0.32	-0.5
2,390,565	-		ABIE40_RS12275	0.32	+0.5
2,390,565	-		ABIE40_RS12275	0.32	-0.3
2,390,565	-		ABIE40_RS12275	0.32	-1.1
2,390,565	-		ABIE40_RS12275	0.32	-2.3
2,390,565	-		ABIE40_RS12275	0.32	-0.9
2,390,594	+		ABIE40_RS12275	0.35	-1.3
2,390,595	-		ABIE40_RS12275	0.35	-0.2
2,390,754	+		ABIE40_RS12275	0.50	+0.5
2,390,754	+		ABIE40_RS12275	0.50	+0.9
2,390,754	+		ABIE40_RS12275	0.50	-3.3
2,390,755	-		ABIE40_RS12275	0.50	+0.8
2,390,755	-		ABIE40_RS12275	0.50	-1.6
2,390,759	+		ABIE40_RS12275	0.51	+1.7
2,390,760	-		ABIE40_RS12275	0.51	-0.9
2,390,760	-		ABIE40_RS12275	0.51	+0.5
2,390,760	-		ABIE40_RS12275	0.51	-0.9
2,390,760	-		ABIE40_RS12275	0.51	+0.5
2,390,760	-		ABIE40_RS12275	0.51	-0.1
2,390,760	-		ABIE40_RS12275	0.51	+0.7
2,390,764	-		ABIE40_RS12275	0.51	-0.5
2,390,821	-		ABIE40_RS12275	0.57	-2.5
2,390,821	-		ABIE40_RS12275	0.57	-0.5
2,390,856	-		ABIE40_RS12275	0.60	+0.7
2,390,916	+		ABIE40_RS12275	0.66	-0.1
2,390,916	+		ABIE40_RS12275	0.66	+1.2
2,390,917	-		ABIE40_RS12275	0.66	+1.1
2,390,917	-		ABIE40_RS12275	0.66	-1.7
2,390,917	-		ABIE40_RS12275	0.66	-1.2
2,390,965	+		ABIE40_RS12275	0.71	+0.8
2,390,965	+		ABIE40_RS12275	0.71	-0.8
2,390,965	+		ABIE40_RS12275	0.71	-0.2
2,390,965	+		ABIE40_RS12275	0.71	+0.0
2,390,965	+		ABIE40_RS12275	0.71	-1.1
2,390,965	+		ABIE40_RS12275	0.71	+0.2
2,390,965	+		ABIE40_RS12275	0.71	-0.2
2,390,966	-		ABIE40_RS12275	0.71	+1.7
2,390,966	-		ABIE40_RS12275	0.71	+0.0
2,391,162	+		ABIE40_RS12275	0.90	+0.6