Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00845 and ABIE40_RS00850 are separated by 74 nucleotides ABIE40_RS00850 and ABIE40_RS00855 are separated by 401 nucleotides ABIE40_RS00855 and ABIE40_RS00860 are separated by 77 nucleotides ABIE40_RS00860 and ABIE40_RS00865 are separated by 110 nucleotides
ABIE40_RS00845: ABIE40_RS00845 - TadE/TadG family type IV pilus assembly protein, at 175,017 to 175,658
_RS00845
ABIE40_RS00850: ABIE40_RS00850 - pilus assembly protein N-terminal domain-containing protein, at 175,733 to 176,146
_RS00850
ABIE40_RS00855: ABIE40_RS00855 - Flp family type IVb pilin, at 176,548 to 176,739
_RS00855
ABIE40_RS00860: ABIE40_RS00860 - prepilin peptidase, at 176,817 to 177,329
_RS00860
ABIE40_RS00865: ABIE40_RS00865 - Flp pilus assembly protein CpaB, at 177,440 to 178,252
_RS00865
Position (kb) 176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.616 kb on + strand at 175.617 kb on - strand at 175.638 kb on - strand at 175.669 kb on + strand at 175.670 kb on - strand at 175.709 kb on + strand at 175.714 kb on + strand at 175.768 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.834 kb on + strand, within ABIE40_RS00850 at 175.835 kb on - strand, within ABIE40_RS00850 at 175.835 kb on - strand, within ABIE40_RS00850 at 175.959 kb on - strand, within ABIE40_RS00850 at 175.993 kb on + strand, within ABIE40_RS00850 at 175.993 kb on + strand, within ABIE40_RS00850 at 175.993 kb on + strand, within ABIE40_RS00850 at 176.015 kb on + strand, within ABIE40_RS00850 at 176.016 kb on - strand, within ABIE40_RS00850 at 176.020 kb on + strand, within ABIE40_RS00850 at 176.020 kb on + strand, within ABIE40_RS00850 at 176.021 kb on - strand, within ABIE40_RS00850 at 176.043 kb on + strand, within ABIE40_RS00850 at 176.044 kb on - strand, within ABIE40_RS00850 at 176.044 kb on - strand, within ABIE40_RS00850 at 176.090 kb on + strand, within ABIE40_RS00850 at 176.123 kb on + strand at 176.124 kb on - strand at 176.124 kb on - strand at 176.212 kb on - strand at 176.301 kb on + strand at 176.359 kb on + strand at 176.360 kb on - strand at 176.360 kb on - strand at 176.360 kb on - strand at 176.378 kb on + strand at 176.381 kb on - strand at 176.381 kb on - strand at 176.436 kb on + strand at 176.449 kb on + strand at 176.450 kb on - strand at 176.474 kb on + strand at 176.475 kb on - strand at 176.536 kb on + strand at 176.536 kb on + strand at 176.537 kb on - strand at 176.537 kb on - strand at 176.537 kb on - strand at 176.543 kb on + strand at 176.543 kb on + strand at 176.544 kb on - strand at 176.544 kb on - strand at 176.562 kb on + strand at 176.605 kb on + strand, within ABIE40_RS00855 at 176.606 kb on - strand, within ABIE40_RS00855 at 176.606 kb on - strand, within ABIE40_RS00855 at 176.757 kb on + strand at 176.758 kb on - strand at 176.811 kb on + strand at 176.811 kb on + strand at 176.812 kb on - strand at 176.812 kb on - strand at 176.833 kb on + strand at 176.834 kb on - strand at 176.863 kb on + strand at 176.864 kb on - strand at 176.864 kb on - strand at 176.939 kb on + strand, within ABIE40_RS00860 at 176.939 kb on + strand, within ABIE40_RS00860 at 176.940 kb on - strand, within ABIE40_RS00860 at 176.940 kb on - strand, within ABIE40_RS00860 at 176.963 kb on + strand, within ABIE40_RS00860 at 176.964 kb on - strand, within ABIE40_RS00860 at 176.964 kb on - strand, within ABIE40_RS00860 at 176.964 kb on - strand, within ABIE40_RS00860 at 177.149 kb on - strand, within ABIE40_RS00860 at 177.168 kb on - strand, within ABIE40_RS00860 at 177.203 kb on + strand, within ABIE40_RS00860 at 177.204 kb on - strand, within ABIE40_RS00860 at 177.204 kb on - strand, within ABIE40_RS00860 at 177.224 kb on + strand, within ABIE40_RS00860 at 177.224 kb on + strand, within ABIE40_RS00860 at 177.225 kb on - strand, within ABIE40_RS00860 at 177.246 kb on + strand, within ABIE40_RS00860 at 177.246 kb on + strand, within ABIE40_RS00860 at 177.247 kb on - strand, within ABIE40_RS00860 at 177.247 kb on - strand, within ABIE40_RS00860 at 177.247 kb on - strand, within ABIE40_RS00860 at 177.247 kb on - strand, within ABIE40_RS00860 at 177.247 kb on - strand, within ABIE40_RS00860 at 177.251 kb on + strand, within ABIE40_RS00860 at 177.251 kb on + strand, within ABIE40_RS00860 at 177.251 kb on + strand, within ABIE40_RS00860 at 177.349 kb on + strand at 177.362 kb on - strand at 177.379 kb on + strand at 177.379 kb on + strand at 177.380 kb on - strand at 177.384 kb on - strand at 177.415 kb on + strand at 177.416 kb on - strand at 177.416 kb on - strand at 177.460 kb on + strand at 177.460 kb on + strand at 177.461 kb on - strand at 177.461 kb on - strand at 177.462 kb on + strand at 177.462 kb on + strand at 177.538 kb on + strand, within ABIE40_RS00865 at 177.538 kb on + strand, within ABIE40_RS00865 at 177.538 kb on + strand, within ABIE40_RS00865 at 177.539 kb on - strand, within ABIE40_RS00865 at 177.539 kb on - strand, within ABIE40_RS00865 at 177.546 kb on + strand, within ABIE40_RS00865 at 177.546 kb on + strand, within ABIE40_RS00865 at 177.547 kb on - strand, within ABIE40_RS00865 at 177.547 kb on - strand, within ABIE40_RS00865 at 177.547 kb on - strand, within ABIE40_RS00865 at 177.547 kb on - strand, within ABIE40_RS00865 at 177.679 kb on + strand, within ABIE40_RS00865 at 177.680 kb on - strand, within ABIE40_RS00865 at 177.680 kb on - strand, within ABIE40_RS00865 at 177.680 kb on - strand, within ABIE40_RS00865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 175,616 + -0.4 175,617 - -0.6 175,638 - -0.4 175,669 + +0.4 175,670 - -0.6 175,709 + +0.5 175,714 + -0.9 175,768 - -0.4 175,769 - -1.5 175,769 - -2.3 175,834 + ABIE40_RS00850 0.24 +0.8 175,835 - ABIE40_RS00850 0.25 -1.2 175,835 - ABIE40_RS00850 0.25 +2.6 175,959 - ABIE40_RS00850 0.55 -1.1 175,993 + ABIE40_RS00850 0.63 -0.2 175,993 + ABIE40_RS00850 0.63 -1.1 175,993 + ABIE40_RS00850 0.63 -0.2 176,015 + ABIE40_RS00850 0.68 -1.9 176,016 - ABIE40_RS00850 0.68 +0.8 176,020 + ABIE40_RS00850 0.69 -3.1 176,020 + ABIE40_RS00850 0.69 -0.1 176,021 - ABIE40_RS00850 0.70 -0.4 176,043 + ABIE40_RS00850 0.75 -1.7 176,044 - ABIE40_RS00850 0.75 -0.6 176,044 - ABIE40_RS00850 0.75 -1.6 176,090 + ABIE40_RS00850 0.86 -1.4 176,123 + -1.9 176,124 - -1.1 176,124 - +0.8 176,212 - -1.8 176,301 + +0.4 176,359 + -1.1 176,360 - -0.0 176,360 - -0.5 176,360 - -0.1 176,378 + -0.6 176,381 - -0.1 176,381 - +0.6 176,436 + +0.0 176,449 + -0.2 176,450 - -1.1 176,474 + +0.4 176,475 - -2.6 176,536 + -1.3 176,536 + +0.5 176,537 - -1.0 176,537 - -0.4 176,537 - -2.3 176,543 + -1.7 176,543 + -1.3 176,544 - -1.1 176,544 - -1.9 176,562 + +0.7 176,605 + ABIE40_RS00855 0.30 -0.2 176,606 - ABIE40_RS00855 0.30 -2.6 176,606 - ABIE40_RS00855 0.30 -0.9 176,757 + -1.2 176,758 - -0.1 176,811 + -2.1 176,811 + -1.3 176,812 - +1.2 176,812 - -0.4 176,833 + -0.1 176,834 - +0.4 176,863 + +0.9 176,864 - -0.4 176,864 - -0.5 176,939 + ABIE40_RS00860 0.24 -1.1 176,939 + ABIE40_RS00860 0.24 -0.9 176,940 - ABIE40_RS00860 0.24 +0.0 176,940 - ABIE40_RS00860 0.24 +2.2 176,963 + ABIE40_RS00860 0.28 +0.5 176,964 - ABIE40_RS00860 0.29 +0.5 176,964 - ABIE40_RS00860 0.29 -1.0 176,964 - ABIE40_RS00860 0.29 -0.4 177,149 - ABIE40_RS00860 0.65 -0.0 177,168 - ABIE40_RS00860 0.68 +1.9 177,203 + ABIE40_RS00860 0.75 -2.0 177,204 - ABIE40_RS00860 0.75 +1.1 177,204 - ABIE40_RS00860 0.75 -0.3 177,224 + ABIE40_RS00860 0.79 -0.1 177,224 + ABIE40_RS00860 0.79 +1.9 177,225 - ABIE40_RS00860 0.80 -0.3 177,246 + ABIE40_RS00860 0.84 -1.9 177,246 + ABIE40_RS00860 0.84 -1.1 177,247 - ABIE40_RS00860 0.84 -0.6 177,247 - ABIE40_RS00860 0.84 +0.0 177,247 - ABIE40_RS00860 0.84 -0.9 177,247 - ABIE40_RS00860 0.84 -0.9 177,247 - ABIE40_RS00860 0.84 +0.2 177,251 + ABIE40_RS00860 0.85 -1.4 177,251 + ABIE40_RS00860 0.85 -0.5 177,251 + ABIE40_RS00860 0.85 -1.2 177,349 + -2.0 177,362 - -0.2 177,379 + +0.8 177,379 + -1.4 177,380 - +0.1 177,384 - -0.8 177,415 + +0.0 177,416 - -2.0 177,416 - -0.7 177,460 + -0.5 177,460 + -1.3 177,461 - +0.1 177,461 - -2.4 177,462 + +0.2 177,462 + +1.7 177,538 + ABIE40_RS00865 0.12 -1.5 177,538 + ABIE40_RS00865 0.12 +0.5 177,538 + ABIE40_RS00865 0.12 -3.1 177,539 - ABIE40_RS00865 0.12 -1.3 177,539 - ABIE40_RS00865 0.12 -0.9 177,546 + ABIE40_RS00865 0.13 -0.5 177,546 + ABIE40_RS00865 0.13 -0.7 177,547 - ABIE40_RS00865 0.13 -1.3 177,547 - ABIE40_RS00865 0.13 +1.0 177,547 - ABIE40_RS00865 0.13 -1.3 177,547 - ABIE40_RS00865 0.13 -1.6 177,679 + ABIE40_RS00865 0.29 -1.0 177,680 - ABIE40_RS00865 0.30 -1.4 177,680 - ABIE40_RS00865 0.30 +0.3 177,680 - ABIE40_RS00865 0.30 -2.0
Or see this region's nucleotide sequence