Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29145

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS29140 and ABIE40_RS29145 are separated by 591 nucleotidesABIE40_RS29145 and ABIE40_RS29150 overlap by 1 nucleotides ABIE40_RS29140: ABIE40_RS29140 - alpha-glucosidase, at 531,562 to 533,220 _RS29140 ABIE40_RS29145: ABIE40_RS29145 - hypothetical protein, at 533,812 to 534,156 _RS29145 ABIE40_RS29150: ABIE40_RS29150 - IS5 family transposase, at 534,156 to 535,235 _RS29150 Position (kb) 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 532.826 kb on + strand, within ABIE40_RS29140at 532.826 kb on + strand, within ABIE40_RS29140at 532.915 kb on + strand, within ABIE40_RS29140at 532.916 kb on - strand, within ABIE40_RS29140at 532.920 kb on + strand, within ABIE40_RS29140at 532.979 kb on + strand, within ABIE40_RS29140at 532.980 kb on - strand, within ABIE40_RS29140at 533.016 kb on - strand, within ABIE40_RS29140at 533.042 kb on + strand, within ABIE40_RS29140at 533.042 kb on + strand, within ABIE40_RS29140at 533.043 kb on - strand, within ABIE40_RS29140at 533.043 kb on - strand, within ABIE40_RS29140at 533.043 kb on - strand, within ABIE40_RS29140at 533.059 kb on + strandat 533.059 kb on + strandat 533.060 kb on - strandat 533.060 kb on - strandat 533.087 kb on + strandat 533.088 kb on - strandat 533.088 kb on - strandat 533.136 kb on + strandat 533.136 kb on + strandat 533.136 kb on + strandat 533.136 kb on + strandat 533.136 kb on + strandat 533.136 kb on + strandat 533.137 kb on - strandat 533.137 kb on - strandat 533.140 kb on - strandat 533.159 kb on + strandat 533.343 kb on - strandat 533.352 kb on + strandat 533.353 kb on - strandat 533.463 kb on + strandat 533.464 kb on - strandat 533.464 kb on - strandat 533.531 kb on - strandat 533.531 kb on - strandat 533.531 kb on - strandat 533.531 kb on - strandat 533.659 kb on + strandat 533.660 kb on - strandat 533.660 kb on - strandat 533.660 kb on - strandat 533.661 kb on + strandat 533.661 kb on + strandat 533.662 kb on - strandat 533.662 kb on - strandat 533.705 kb on - strandat 533.705 kb on - strandat 533.709 kb on + strandat 533.785 kb on + strandat 533.785 kb on + strandat 533.785 kb on + strandat 533.786 kb on - strandat 533.786 kb on - strandat 533.794 kb on - strandat 533.794 kb on - strandat 533.857 kb on - strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.858 kb on + strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.859 kb on - strand, within ABIE40_RS29145at 533.862 kb on + strand, within ABIE40_RS29145at 533.862 kb on + strand, within ABIE40_RS29145at 533.862 kb on + strand, within ABIE40_RS29145at 534.003 kb on + strand, within ABIE40_RS29145at 534.049 kb on + strand, within ABIE40_RS29145at 534.049 kb on + strand, within ABIE40_RS29145at 534.049 kb on + strand, within ABIE40_RS29145at 534.050 kb on - strand, within ABIE40_RS29145at 534.050 kb on - strand, within ABIE40_RS29145at 534.200 kb on - strandat 534.306 kb on - strand, within ABIE40_RS29150at 534.321 kb on + strand, within ABIE40_RS29150at 534.321 kb on + strand, within ABIE40_RS29150at 534.322 kb on - strand, within ABIE40_RS29150at 534.322 kb on - strand, within ABIE40_RS29150at 534.332 kb on + strand, within ABIE40_RS29150at 534.332 kb on + strand, within ABIE40_RS29150at 534.334 kb on + strand, within ABIE40_RS29150at 534.335 kb on - strand, within ABIE40_RS29150at 534.335 kb on - strand, within ABIE40_RS29150at 534.335 kb on - strand, within ABIE40_RS29150at 534.335 kb on - strand, within ABIE40_RS29150at 534.451 kb on + strand, within ABIE40_RS29150at 534.451 kb on + strand, within ABIE40_RS29150at 534.452 kb on - strand, within ABIE40_RS29150at 534.556 kb on + strand, within ABIE40_RS29150at 534.556 kb on + strand, within ABIE40_RS29150at 534.556 kb on + strand, within ABIE40_RS29150at 534.557 kb on - strand, within ABIE40_RS29150at 534.557 kb on - strand, within ABIE40_RS29150at 534.643 kb on + strand, within ABIE40_RS29150at 534.643 kb on + strand, within ABIE40_RS29150at 534.644 kb on - strand, within ABIE40_RS29150at 534.644 kb on - strand, within ABIE40_RS29150at 534.644 kb on - strand, within ABIE40_RS29150at 534.644 kb on - strand, within ABIE40_RS29150at 534.835 kb on - strand, within ABIE40_RS29150at 534.855 kb on + strand, within ABIE40_RS29150at 534.980 kb on - strand, within ABIE40_RS29150

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
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532,826 + ABIE40_RS29140 0.76 -0.4
532,826 + ABIE40_RS29140 0.76 -1.5
532,915 + ABIE40_RS29140 0.82 +1.2
532,916 - ABIE40_RS29140 0.82 -1.3
532,920 + ABIE40_RS29140 0.82 -3.3
532,979 + ABIE40_RS29140 0.85 +0.8
532,980 - ABIE40_RS29140 0.85 -0.1
533,016 - ABIE40_RS29140 0.88 -0.1
533,042 + ABIE40_RS29140 0.89 -0.7
533,042 + ABIE40_RS29140 0.89 -0.7
533,043 - ABIE40_RS29140 0.89 +0.2
533,043 - ABIE40_RS29140 0.89 -0.8
533,043 - ABIE40_RS29140 0.89 +0.6
533,059 + +0.6
533,059 + -1.0
533,060 - +0.2
533,060 - -2.2
533,087 + +0.2
533,088 - -0.6
533,088 - -0.3
533,136 + -0.6
533,136 + +0.4
533,136 + +0.1
533,136 + -0.4
533,136 + -2.0
533,136 + +0.0
533,137 - -0.8
533,137 - +0.6
533,140 - -1.4
533,159 + -0.8
533,343 - +0.9
533,352 + +2.2
533,353 - +1.0
533,463 + -1.7
533,464 - -0.0
533,464 - -1.4
533,531 - -0.4
533,531 - +0.2
533,531 - -1.2
533,531 - +1.2
533,659 + +0.2
533,660 - +2.2
533,660 - -0.1
533,660 - -0.8
533,661 + +0.7
533,661 + -0.4
533,662 - -1.3
533,662 - +0.2
533,705 - -0.1
533,705 - -2.3
533,709 + +1.6
533,785 + -1.1
533,785 + -0.1
533,785 + -0.1
533,786 - -1.1
533,786 - -0.6
533,794 - -0.8
533,794 - -0.1
533,857 - ABIE40_RS29145 0.13 +0.8
533,858 + ABIE40_RS29145 0.13 -2.5
533,858 + ABIE40_RS29145 0.13 -0.9
533,858 + ABIE40_RS29145 0.13 -0.3
533,858 + ABIE40_RS29145 0.13 +0.4
533,858 + ABIE40_RS29145 0.13 +0.1
533,858 + ABIE40_RS29145 0.13 +0.8
533,858 + ABIE40_RS29145 0.13 +0.7
533,858 + ABIE40_RS29145 0.13 -1.4
533,858 + ABIE40_RS29145 0.13 -0.0
533,859 - ABIE40_RS29145 0.14 -1.9
533,859 - ABIE40_RS29145 0.14 +1.7
533,859 - ABIE40_RS29145 0.14 -1.0
533,859 - ABIE40_RS29145 0.14 +2.2
533,859 - ABIE40_RS29145 0.14 -1.9
533,859 - ABIE40_RS29145 0.14 +1.5
533,859 - ABIE40_RS29145 0.14 -2.8
533,859 - ABIE40_RS29145 0.14 +1.2
533,859 - ABIE40_RS29145 0.14 +2.2
533,862 + ABIE40_RS29145 0.14 +0.6
533,862 + ABIE40_RS29145 0.14 -0.1
533,862 + ABIE40_RS29145 0.14 +0.6
534,003 + ABIE40_RS29145 0.55 +0.8
534,049 + ABIE40_RS29145 0.69 +0.2
534,049 + ABIE40_RS29145 0.69 -0.4
534,049 + ABIE40_RS29145 0.69 +0.6
534,050 - ABIE40_RS29145 0.69 +0.2
534,050 - ABIE40_RS29145 0.69 -3.3
534,200 - +0.4
534,306 - ABIE40_RS29150 0.14 +0.2
534,321 + ABIE40_RS29150 0.15 +1.2
534,321 + ABIE40_RS29150 0.15 +1.2
534,322 - ABIE40_RS29150 0.15 +0.0
534,322 - ABIE40_RS29150 0.15 -0.1
534,332 + ABIE40_RS29150 0.16 -1.0
534,332 + ABIE40_RS29150 0.16 -0.1
534,334 + ABIE40_RS29150 0.16 -0.8
534,335 - ABIE40_RS29150 0.17 +0.6
534,335 - ABIE40_RS29150 0.17 +0.6
534,335 - ABIE40_RS29150 0.17 +0.6
534,335 - ABIE40_RS29150 0.17 +1.0
534,451 + ABIE40_RS29150 0.27 +0.9
534,451 + ABIE40_RS29150 0.27 -2.6
534,452 - ABIE40_RS29150 0.27 +1.4
534,556 + ABIE40_RS29150 0.37 -0.4
534,556 + ABIE40_RS29150 0.37 -0.9
534,556 + ABIE40_RS29150 0.37 -1.0
534,557 - ABIE40_RS29150 0.37 -1.0
534,557 - ABIE40_RS29150 0.37 -2.7
534,643 + ABIE40_RS29150 0.45 -1.3
534,643 + ABIE40_RS29150 0.45 -3.1
534,644 - ABIE40_RS29150 0.45 +1.5
534,644 - ABIE40_RS29150 0.45 -1.9
534,644 - ABIE40_RS29150 0.45 +0.8
534,644 - ABIE40_RS29150 0.45 -1.4
534,835 - ABIE40_RS29150 0.63 +0.2
534,855 + ABIE40_RS29150 0.65 -2.3
534,980 - ABIE40_RS29150 0.76 +1.2

Or see this region's nucleotide sequence