Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS23940

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS23930 and ABIE40_RS23935 are separated by 34 nucleotidesABIE40_RS23935 and ABIE40_RS23940 are separated by 126 nucleotidesABIE40_RS23940 and ABIE40_RS23945 are separated by 63 nucleotides ABIE40_RS23930: ABIE40_RS23930 - N-methyl-L-tryptophan oxidase, at 929,830 to 930,972 _RS23930 ABIE40_RS23935: ABIE40_RS23935 - DUF308 domain-containing protein, at 931,007 to 931,567 _RS23935 ABIE40_RS23940: ABIE40_RS23940 - TetR/AcrR family transcriptional regulator, at 931,694 to 932,272 _RS23940 ABIE40_RS23945: ABIE40_RS23945 - glutathione-dependent disulfide-bond oxidoreductase, at 932,336 to 933,229 _RS23945 Position (kb) 931 932 933Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 930.999 kb on + strandat 930.999 kb on + strandat 931.068 kb on + strand, within ABIE40_RS23935at 931.068 kb on + strand, within ABIE40_RS23935at 931.068 kb on + strand, within ABIE40_RS23935at 931.068 kb on + strand, within ABIE40_RS23935at 931.068 kb on + strand, within ABIE40_RS23935at 931.068 kb on + strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.069 kb on - strand, within ABIE40_RS23935at 931.089 kb on + strand, within ABIE40_RS23935at 931.228 kb on + strand, within ABIE40_RS23935at 931.229 kb on - strand, within ABIE40_RS23935at 931.230 kb on + strand, within ABIE40_RS23935at 931.230 kb on + strand, within ABIE40_RS23935at 931.230 kb on + strand, within ABIE40_RS23935at 931.230 kb on + strand, within ABIE40_RS23935at 931.231 kb on - strand, within ABIE40_RS23935at 931.288 kb on - strand, within ABIE40_RS23935at 931.288 kb on - strand, within ABIE40_RS23935at 931.288 kb on - strand, within ABIE40_RS23935at 931.364 kb on - strand, within ABIE40_RS23935at 931.364 kb on - strand, within ABIE40_RS23935at 931.364 kb on - strand, within ABIE40_RS23935at 931.428 kb on + strand, within ABIE40_RS23935at 931.429 kb on - strand, within ABIE40_RS23935at 931.519 kb on - strandat 931.519 kb on - strandat 931.519 kb on - strandat 931.521 kb on + strandat 931.524 kb on + strandat 931.524 kb on + strandat 931.524 kb on + strandat 931.524 kb on + strandat 931.524 kb on + strandat 931.524 kb on + strandat 931.524 kb on + strandat 931.525 kb on - strandat 931.579 kb on + strandat 931.580 kb on - strandat 931.580 kb on - strandat 931.639 kb on + strandat 931.639 kb on + strandat 931.640 kb on - strandat 931.640 kb on - strandat 931.640 kb on - strandat 931.682 kb on + strandat 931.682 kb on + strandat 931.683 kb on - strandat 931.760 kb on + strand, within ABIE40_RS23940at 931.761 kb on - strand, within ABIE40_RS23940at 931.761 kb on - strand, within ABIE40_RS23940at 931.761 kb on - strand, within ABIE40_RS23940at 931.763 kb on - strand, within ABIE40_RS23940at 931.763 kb on - strand, within ABIE40_RS23940at 931.783 kb on + strand, within ABIE40_RS23940at 931.783 kb on + strand, within ABIE40_RS23940at 931.784 kb on - strand, within ABIE40_RS23940at 931.784 kb on - strand, within ABIE40_RS23940at 931.871 kb on + strand, within ABIE40_RS23940at 931.871 kb on + strand, within ABIE40_RS23940at 931.871 kb on + strand, within ABIE40_RS23940at 931.872 kb on - strand, within ABIE40_RS23940at 931.872 kb on - strand, within ABIE40_RS23940at 932.268 kb on + strandat 932.321 kb on + strandat 932.321 kb on + strandat 932.322 kb on - strandat 932.322 kb on - strandat 932.435 kb on - strand, within ABIE40_RS23945at 932.435 kb on - strand, within ABIE40_RS23945at 932.435 kb on - strand, within ABIE40_RS23945at 932.435 kb on - strand, within ABIE40_RS23945at 932.497 kb on - strand, within ABIE40_RS23945at 932.533 kb on - strand, within ABIE40_RS23945at 932.560 kb on - strand, within ABIE40_RS23945at 932.592 kb on + strand, within ABIE40_RS23945at 932.593 kb on - strand, within ABIE40_RS23945at 932.610 kb on + strand, within ABIE40_RS23945at 932.610 kb on + strand, within ABIE40_RS23945at 932.610 kb on + strand, within ABIE40_RS23945at 932.610 kb on + strand, within ABIE40_RS23945at 932.611 kb on - strand, within ABIE40_RS23945at 932.611 kb on - strand, within ABIE40_RS23945at 932.611 kb on - strand, within ABIE40_RS23945at 932.611 kb on - strand, within ABIE40_RS23945at 932.611 kb on - strand, within ABIE40_RS23945at 932.706 kb on + strand, within ABIE40_RS23945at 932.706 kb on + strand, within ABIE40_RS23945at 932.706 kb on + strand, within ABIE40_RS23945at 932.707 kb on - strand, within ABIE40_RS23945at 932.707 kb on - strand, within ABIE40_RS23945at 932.707 kb on - strand, within ABIE40_RS23945at 932.707 kb on - strand, within ABIE40_RS23945at 932.707 kb on - strand, within ABIE40_RS23945at 932.707 kb on - strand, within ABIE40_RS23945at 932.707 kb on - strand, within ABIE40_RS23945at 932.712 kb on + strand, within ABIE40_RS23945at 932.712 kb on + strand, within ABIE40_RS23945at 932.712 kb on + strand, within ABIE40_RS23945at 932.712 kb on + strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.713 kb on - strand, within ABIE40_RS23945at 932.739 kb on + strand, within ABIE40_RS23945at 932.835 kb on + strand, within ABIE40_RS23945at 932.836 kb on - strand, within ABIE40_RS23945at 932.983 kb on - strand, within ABIE40_RS23945at 933.063 kb on + strand, within ABIE40_RS23945at 933.063 kb on + strand, within ABIE40_RS23945at 933.063 kb on + strand, within ABIE40_RS23945at 933.133 kb on + strand, within ABIE40_RS23945at 933.134 kb on - strand, within ABIE40_RS23945at 933.249 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
remove
930,999 + -1.0
930,999 + +0.2
931,068 + ABIE40_RS23935 0.11 +0.7
931,068 + ABIE40_RS23935 0.11 -0.5
931,068 + ABIE40_RS23935 0.11 -0.6
931,068 + ABIE40_RS23935 0.11 -0.3
931,068 + ABIE40_RS23935 0.11 +1.0
931,068 + ABIE40_RS23935 0.11 +3.2
931,069 - ABIE40_RS23935 0.11 +0.1
931,069 - ABIE40_RS23935 0.11 -0.8
931,069 - ABIE40_RS23935 0.11 +1.0
931,069 - ABIE40_RS23935 0.11 +0.1
931,069 - ABIE40_RS23935 0.11 +1.4
931,069 - ABIE40_RS23935 0.11 -2.3
931,069 - ABIE40_RS23935 0.11 -1.3
931,069 - ABIE40_RS23935 0.11 +0.5
931,069 - ABIE40_RS23935 0.11 +0.5
931,089 + ABIE40_RS23935 0.15 +0.4
931,228 + ABIE40_RS23935 0.39 +0.4
931,229 - ABIE40_RS23935 0.40 -0.2
931,230 + ABIE40_RS23935 0.40 +1.0
931,230 + ABIE40_RS23935 0.40 -1.0
931,230 + ABIE40_RS23935 0.40 -2.3
931,230 + ABIE40_RS23935 0.40 -1.0
931,231 - ABIE40_RS23935 0.40 +0.2
931,288 - ABIE40_RS23935 0.50 +1.0
931,288 - ABIE40_RS23935 0.50 +0.5
931,288 - ABIE40_RS23935 0.50 +1.7
931,364 - ABIE40_RS23935 0.64 +0.7
931,364 - ABIE40_RS23935 0.64 -0.4
931,364 - ABIE40_RS23935 0.64 -0.6
931,428 + ABIE40_RS23935 0.75 -1.0
931,429 - ABIE40_RS23935 0.75 +0.7
931,519 - +0.2
931,519 - +1.2
931,519 - +0.4
931,521 + -0.6
931,524 + -0.2
931,524 + -0.3
931,524 + -0.1
931,524 + +0.2
931,524 + +0.2
931,524 + +3.0
931,524 + +0.6
931,525 - +0.8
931,579 + -0.2
931,580 - -1.6
931,580 - +0.2
931,639 + -0.2
931,639 + -0.6
931,640 - -0.1
931,640 - +1.4
931,640 - -1.5
931,682 + -0.6
931,682 + -0.0
931,683 - -1.1
931,760 + ABIE40_RS23940 0.11 -0.6
931,761 - ABIE40_RS23940 0.12 +1.0
931,761 - ABIE40_RS23940 0.12 -0.6
931,761 - ABIE40_RS23940 0.12 -1.5
931,763 - ABIE40_RS23940 0.12 -0.9
931,763 - ABIE40_RS23940 0.12 -2.1
931,783 + ABIE40_RS23940 0.15 -1.3
931,783 + ABIE40_RS23940 0.15 -0.6
931,784 - ABIE40_RS23940 0.16 +2.0
931,784 - ABIE40_RS23940 0.16 -1.3
931,871 + ABIE40_RS23940 0.31 -1.4
931,871 + ABIE40_RS23940 0.31 -2.4
931,871 + ABIE40_RS23940 0.31 +1.1
931,872 - ABIE40_RS23940 0.31 +0.2
931,872 - ABIE40_RS23940 0.31 -0.8
932,268 + +0.9
932,321 + -0.2
932,321 + -0.6
932,322 - +1.2
932,322 - +1.3
932,435 - ABIE40_RS23945 0.11 +2.4
932,435 - ABIE40_RS23945 0.11 +1.0
932,435 - ABIE40_RS23945 0.11 -1.4
932,435 - ABIE40_RS23945 0.11 -0.2
932,497 - ABIE40_RS23945 0.18 +0.7
932,533 - ABIE40_RS23945 0.22 -1.4
932,560 - ABIE40_RS23945 0.25 +0.2
932,592 + ABIE40_RS23945 0.29 -2.0
932,593 - ABIE40_RS23945 0.29 +1.1
932,610 + ABIE40_RS23945 0.31 +0.3
932,610 + ABIE40_RS23945 0.31 -1.5
932,610 + ABIE40_RS23945 0.31 -3.0
932,610 + ABIE40_RS23945 0.31 +0.1
932,611 - ABIE40_RS23945 0.31 +2.0
932,611 - ABIE40_RS23945 0.31 -0.1
932,611 - ABIE40_RS23945 0.31 -0.6
932,611 - ABIE40_RS23945 0.31 -0.4
932,611 - ABIE40_RS23945 0.31 -1.2
932,706 + ABIE40_RS23945 0.41 -1.3
932,706 + ABIE40_RS23945 0.41 -0.8
932,706 + ABIE40_RS23945 0.41 +0.5
932,707 - ABIE40_RS23945 0.41 -0.8
932,707 - ABIE40_RS23945 0.41 +1.4
932,707 - ABIE40_RS23945 0.41 +1.5
932,707 - ABIE40_RS23945 0.41 -1.1
932,707 - ABIE40_RS23945 0.41 +1.4
932,707 - ABIE40_RS23945 0.41 -0.1
932,707 - ABIE40_RS23945 0.41 -0.1
932,712 + ABIE40_RS23945 0.42 -1.8
932,712 + ABIE40_RS23945 0.42 +0.8
932,712 + ABIE40_RS23945 0.42 +0.7
932,712 + ABIE40_RS23945 0.42 -0.9
932,713 - ABIE40_RS23945 0.42 -1.9
932,713 - ABIE40_RS23945 0.42 +0.6
932,713 - ABIE40_RS23945 0.42 +0.7
932,713 - ABIE40_RS23945 0.42 +0.4
932,713 - ABIE40_RS23945 0.42 +0.4
932,713 - ABIE40_RS23945 0.42 -1.0
932,713 - ABIE40_RS23945 0.42 -0.1
932,713 - ABIE40_RS23945 0.42 +0.4
932,739 + ABIE40_RS23945 0.45 -1.2
932,835 + ABIE40_RS23945 0.56 -0.7
932,836 - ABIE40_RS23945 0.56 -0.9
932,983 - ABIE40_RS23945 0.72 -1.1
933,063 + ABIE40_RS23945 0.81 +2.0
933,063 + ABIE40_RS23945 0.81 -1.7
933,063 + ABIE40_RS23945 0.81 -0.4
933,133 + ABIE40_RS23945 0.89 +0.4
933,134 - ABIE40_RS23945 0.89 -2.6
933,249 + -0.8

Or see this region's nucleotide sequence