Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21990 and ABIE40_RS21995 are separated by 265 nucleotides ABIE40_RS21995 and ABIE40_RS22000 overlap by 41 nucleotides ABIE40_RS22000 and ABIE40_RS22005 are separated by 0 nucleotides ABIE40_RS22005 and ABIE40_RS22010 are separated by 92 nucleotides
ABIE40_RS21990: ABIE40_RS21990 - organic hydroperoxide resistance protein, at 523,994 to 524,416
_RS21990
ABIE40_RS21995: ABIE40_RS21995 - MbcA/ParS/Xre antitoxin family protein, at 524,682 to 525,065
_RS21995
ABIE40_RS22000: ABIE40_RS22000 - RES family NAD+ phosphorylase, at 525,025 to 525,777
_RS22000
ABIE40_RS22005: ABIE40_RS22005 - MarR family winged helix-turn-helix transcriptional regulator, at 525,778 to 526,224
_RS22005
ABIE40_RS22010: ABIE40_RS22010 - thioredoxin family protein, at 526,317 to 527,045
_RS22010
Position (kb) 525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 524.367 kb on - strand, within ABIE40_RS21990 at 524.435 kb on + strand at 524.535 kb on - strand at 524.535 kb on - strand at 524.656 kb on - strand at 524.816 kb on + strand, within ABIE40_RS21995 at 524.887 kb on + strand, within ABIE40_RS21995 at 524.887 kb on + strand, within ABIE40_RS21995 at 524.887 kb on + strand, within ABIE40_RS21995 at 524.887 kb on + strand, within ABIE40_RS21995 at 524.887 kb on + strand, within ABIE40_RS21995 at 524.887 kb on + strand, within ABIE40_RS21995 at 524.887 kb on + strand, within ABIE40_RS21995 at 524.890 kb on + strand, within ABIE40_RS21995 at 524.970 kb on - strand, within ABIE40_RS21995 at 524.970 kb on - strand, within ABIE40_RS21995 at 525.010 kb on + strand, within ABIE40_RS21995 at 525.010 kb on + strand, within ABIE40_RS21995 at 525.010 kb on + strand, within ABIE40_RS21995 at 525.010 kb on + strand, within ABIE40_RS21995 at 525.037 kb on - strand at 525.037 kb on - strand at 525.037 kb on - strand at 525.142 kb on - strand, within ABIE40_RS22000 at 525.223 kb on + strand, within ABIE40_RS22000 at 525.223 kb on + strand, within ABIE40_RS22000 at 525.224 kb on - strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.310 kb on + strand, within ABIE40_RS22000 at 525.311 kb on - strand, within ABIE40_RS22000 at 525.311 kb on - strand, within ABIE40_RS22000 at 525.311 kb on - strand, within ABIE40_RS22000 at 525.311 kb on - strand, within ABIE40_RS22000 at 525.355 kb on + strand, within ABIE40_RS22000 at 525.355 kb on + strand, within ABIE40_RS22000 at 525.356 kb on - strand, within ABIE40_RS22000 at 525.387 kb on + strand, within ABIE40_RS22000 at 525.388 kb on - strand, within ABIE40_RS22000 at 525.388 kb on - strand, within ABIE40_RS22000 at 525.415 kb on + strand, within ABIE40_RS22000 at 525.415 kb on + strand, within ABIE40_RS22000 at 525.416 kb on - strand, within ABIE40_RS22000 at 525.416 kb on - strand, within ABIE40_RS22000 at 525.416 kb on - strand, within ABIE40_RS22000 at 525.417 kb on + strand, within ABIE40_RS22000 at 525.417 kb on + strand, within ABIE40_RS22000 at 525.417 kb on + strand, within ABIE40_RS22000 at 525.418 kb on - strand, within ABIE40_RS22000 at 525.418 kb on - strand, within ABIE40_RS22000 at 525.418 kb on - strand, within ABIE40_RS22000 at 525.466 kb on - strand, within ABIE40_RS22000 at 525.514 kb on + strand, within ABIE40_RS22000 at 525.514 kb on + strand, within ABIE40_RS22000 at 525.515 kb on - strand, within ABIE40_RS22000 at 525.515 kb on - strand, within ABIE40_RS22000 at 525.950 kb on - strand, within ABIE40_RS22005 at 525.955 kb on + strand, within ABIE40_RS22005 at 525.955 kb on + strand, within ABIE40_RS22005 at 525.955 kb on + strand, within ABIE40_RS22005 at 525.956 kb on - strand, within ABIE40_RS22005 at 525.956 kb on - strand, within ABIE40_RS22005 at 525.956 kb on - strand, within ABIE40_RS22005 at 525.983 kb on - strand, within ABIE40_RS22005 at 526.200 kb on - strand at 526.458 kb on + strand, within ABIE40_RS22010 at 526.458 kb on + strand, within ABIE40_RS22010 at 526.528 kb on + strand, within ABIE40_RS22010 at 526.528 kb on + strand, within ABIE40_RS22010 at 526.528 kb on + strand, within ABIE40_RS22010 at 526.529 kb on - strand, within ABIE40_RS22010 at 526.529 kb on - strand, within ABIE40_RS22010 at 526.529 kb on - strand, within ABIE40_RS22010 at 526.529 kb on - strand, within ABIE40_RS22010 at 526.529 kb on - strand, within ABIE40_RS22010 at 526.529 kb on - strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.530 kb on + strand, within ABIE40_RS22010 at 526.531 kb on - strand, within ABIE40_RS22010 at 526.531 kb on - strand, within ABIE40_RS22010 at 526.680 kb on + strand, within ABIE40_RS22010 at 526.681 kb on - strand, within ABIE40_RS22010 at 526.681 kb on - strand, within ABIE40_RS22010
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 524,367 - ABIE40_RS21990 0.88 -2.8 524,435 + +0.7 524,535 - -0.6 524,535 - -2.1 524,656 - -1.0 524,816 + ABIE40_RS21995 0.35 -0.3 524,887 + ABIE40_RS21995 0.53 -0.0 524,887 + ABIE40_RS21995 0.53 -0.5 524,887 + ABIE40_RS21995 0.53 -1.6 524,887 + ABIE40_RS21995 0.53 -0.2 524,887 + ABIE40_RS21995 0.53 +0.2 524,887 + ABIE40_RS21995 0.53 -0.3 524,887 + ABIE40_RS21995 0.53 -0.1 524,890 + ABIE40_RS21995 0.54 -1.0 524,970 - ABIE40_RS21995 0.75 +1.9 524,970 - ABIE40_RS21995 0.75 -0.1 525,010 + ABIE40_RS21995 0.85 -0.4 525,010 + ABIE40_RS21995 0.85 +1.2 525,010 + ABIE40_RS21995 0.85 +0.1 525,010 + ABIE40_RS21995 0.85 -1.3 525,037 - +0.9 525,037 - +0.1 525,037 - -0.1 525,142 - ABIE40_RS22000 0.16 +1.9 525,223 + ABIE40_RS22000 0.26 +0.2 525,223 + ABIE40_RS22000 0.26 -1.5 525,224 - ABIE40_RS22000 0.26 -0.9 525,310 + ABIE40_RS22000 0.38 -1.2 525,310 + ABIE40_RS22000 0.38 -1.3 525,310 + ABIE40_RS22000 0.38 -1.1 525,310 + ABIE40_RS22000 0.38 +0.3 525,310 + ABIE40_RS22000 0.38 -0.9 525,310 + ABIE40_RS22000 0.38 +1.3 525,310 + ABIE40_RS22000 0.38 -2.6 525,310 + ABIE40_RS22000 0.38 -0.6 525,310 + ABIE40_RS22000 0.38 -1.3 525,310 + ABIE40_RS22000 0.38 +3.5 525,311 - ABIE40_RS22000 0.38 +0.3 525,311 - ABIE40_RS22000 0.38 -0.1 525,311 - ABIE40_RS22000 0.38 +0.3 525,311 - ABIE40_RS22000 0.38 +1.9 525,355 + ABIE40_RS22000 0.44 -0.8 525,355 + ABIE40_RS22000 0.44 +0.9 525,356 - ABIE40_RS22000 0.44 -0.5 525,387 + ABIE40_RS22000 0.48 -0.2 525,388 - ABIE40_RS22000 0.48 +0.3 525,388 - ABIE40_RS22000 0.48 +0.3 525,415 + ABIE40_RS22000 0.52 -1.3 525,415 + ABIE40_RS22000 0.52 +0.3 525,416 - ABIE40_RS22000 0.52 -0.7 525,416 - ABIE40_RS22000 0.52 -3.3 525,416 - ABIE40_RS22000 0.52 -1.8 525,417 + ABIE40_RS22000 0.52 -2.2 525,417 + ABIE40_RS22000 0.52 -1.6 525,417 + ABIE40_RS22000 0.52 -0.5 525,418 - ABIE40_RS22000 0.52 +0.5 525,418 - ABIE40_RS22000 0.52 +0.9 525,418 - ABIE40_RS22000 0.52 -1.7 525,466 - ABIE40_RS22000 0.59 -0.1 525,514 + ABIE40_RS22000 0.65 +0.5 525,514 + ABIE40_RS22000 0.65 +0.3 525,515 - ABIE40_RS22000 0.65 -2.1 525,515 - ABIE40_RS22000 0.65 +0.9 525,950 - ABIE40_RS22005 0.38 -1.6 525,955 + ABIE40_RS22005 0.40 +1.9 525,955 + ABIE40_RS22005 0.40 +2.0 525,955 + ABIE40_RS22005 0.40 -0.9 525,956 - ABIE40_RS22005 0.40 -2.4 525,956 - ABIE40_RS22005 0.40 -1.8 525,956 - ABIE40_RS22005 0.40 +0.7 525,983 - ABIE40_RS22005 0.46 -0.9 526,200 - -1.0 526,458 + ABIE40_RS22010 0.19 +0.2 526,458 + ABIE40_RS22010 0.19 -0.5 526,528 + ABIE40_RS22010 0.29 +0.7 526,528 + ABIE40_RS22010 0.29 +0.4 526,528 + ABIE40_RS22010 0.29 -0.9 526,529 - ABIE40_RS22010 0.29 -0.2 526,529 - ABIE40_RS22010 0.29 +1.0 526,529 - ABIE40_RS22010 0.29 -0.8 526,529 - ABIE40_RS22010 0.29 -0.1 526,529 - ABIE40_RS22010 0.29 +0.8 526,529 - ABIE40_RS22010 0.29 +0.4 526,530 + ABIE40_RS22010 0.29 -1.4 526,530 + ABIE40_RS22010 0.29 +0.2 526,530 + ABIE40_RS22010 0.29 -0.1 526,530 + ABIE40_RS22010 0.29 +1.4 526,530 + ABIE40_RS22010 0.29 +0.7 526,530 + ABIE40_RS22010 0.29 -0.6 526,530 + ABIE40_RS22010 0.29 -0.3 526,530 + ABIE40_RS22010 0.29 -1.1 526,531 - ABIE40_RS22010 0.29 +0.9 526,531 - ABIE40_RS22010 0.29 -1.2 526,680 + ABIE40_RS22010 0.50 +0.9 526,681 - ABIE40_RS22010 0.50 +0.1 526,681 - ABIE40_RS22010 0.50 -0.1
Or see this region's nucleotide sequence